data_VNZ
# 
_chem_comp.id                                    VNZ 
_chem_comp.name                                  Ivabradine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H36 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1,3,5-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one; 3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-20 
_chem_comp.pdbx_modified_date                    2024-08-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.585 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VNZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OFI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VNZ O1  O1  O 0 1 N N N N N N 168.942 172.200 152.386 -2.914 3.112  0.094  O1  VNZ 1  
VNZ C6  C1  C 0 1 N N N N N N 168.136 171.568 153.055 -3.582 2.341  -0.561 C6  VNZ 2  
VNZ C5  C2  C 0 1 N N N N N N 168.551 170.385 153.902 -5.038 2.305  -0.241 C5  VNZ 3  
VNZ C4  C3  C 0 1 Y N N N N N 168.359 170.413 155.402 -5.530 0.885  -0.090 C4  VNZ 4  
VNZ C24 C4  C 0 1 Y N N N N N 169.384 169.907 156.198 -6.038 0.458  1.123  C24 VNZ 5  
VNZ C25 C5  C 0 1 Y N N N N N 169.251 169.816 157.570 -6.514 -0.839 1.245  C25 VNZ 6  
VNZ O4  O2  O 0 1 N N N N N N 170.081 169.080 158.365 -7.013 -1.276 2.432  O4  VNZ 7  
VNZ C26 C6  C 0 1 N N N N N N 170.616 167.882 157.806 -7.018 -0.346 3.517  C26 VNZ 8  
VNZ C1  C7  C 0 1 Y N N N N N 168.083 170.279 158.177 -6.477 -1.689 0.144  C1  VNZ 9  
VNZ O   O3  O 0 1 N N N N N N 168.000 170.121 159.528 -6.953 -2.958 0.250  O   VNZ 10 
VNZ C   C8  C 0 1 N N N N N N 166.714 169.770 160.061 -6.884 -3.777 -0.919 C   VNZ 11 
VNZ N   N1  N 0 1 N N N N N N 166.834 171.874 153.071 -2.936 1.649  -1.464 N   VNZ 12 
VNZ C22 C9  C 0 1 N N N N N N 166.230 172.501 154.238 -3.356 0.604  -2.378 C22 VNZ 13 
VNZ C23 C10 C 0 1 N N N N N N 165.995 171.482 155.339 -4.864 0.482  -2.473 C23 VNZ 14 
VNZ C3  C11 C 0 1 Y N N N N N 167.187 170.868 156.021 -5.465 0.053  -1.168 C3  VNZ 15 
VNZ C2  C12 C 0 1 Y N N N N N 167.076 170.787 157.402 -5.955 -1.246 -1.059 C2  VNZ 16 
VNZ C7  C13 C 0 1 N N N N N N 165.925 171.499 151.985 -1.518 1.997  -1.574 C7  VNZ 17 
VNZ C8  C14 C 0 1 N N N N N N 164.594 171.015 152.542 -0.702 1.123  -0.620 C8  VNZ 18 
VNZ C9  C15 C 0 1 N N N N N N 163.715 170.234 151.592 0.779  1.487  -0.734 C9  VNZ 19 
VNZ N1  N2  N 0 1 N N N N N N 163.994 168.796 151.573 1.562  0.647  0.182  N1  VNZ 20 
VNZ C10 C16 C 0 1 N N N N N N 164.341 168.300 152.904 1.235  0.949  1.582  C10 VNZ 21 
VNZ C11 C17 C 0 1 N N N N N N 164.897 168.347 150.516 3.002  0.797  -0.067 C11 VNZ 22 
VNZ C12 C18 C 0 1 N N S N N N 166.248 167.839 151.032 3.770  -0.265 0.724  C12 VNZ 23 
VNZ C21 C19 C 0 1 Y N N N N N 167.600 168.457 150.691 5.266  -0.115 0.621  C21 VNZ 24 
VNZ C14 C20 C 0 1 Y N N N N N 168.135 167.251 150.446 5.349  -1.330 -0.037 C14 VNZ 25 
VNZ C13 C21 C 0 1 N N N N N N 166.788 166.601 150.234 3.859  -1.608 -0.002 C13 VNZ 26 
VNZ C20 C22 C 0 1 Y N N N N N 168.372 169.599 150.835 6.406  0.624  0.876  C20 VNZ 27 
VNZ C18 C23 C 0 1 Y N N N N N 169.757 169.434 150.827 7.645  0.154  0.474  C18 VNZ 28 
VNZ O3  O4  O 0 1 N N N N N N 170.663 170.446 151.012 8.767  0.881  0.725  O3  VNZ 29 
VNZ C19 C24 C 0 1 N N N N N N 171.334 170.520 152.271 8.596  2.123  1.409  C19 VNZ 30 
VNZ C16 C25 C 0 1 Y N N N N N 170.321 168.148 150.631 7.735  -1.067 -0.188 C16 VNZ 31 
VNZ C15 C26 C 0 1 Y N N N N N 169.502 167.056 150.418 6.592  -1.802 -0.442 C15 VNZ 32 
VNZ O2  O5  O 0 1 N N N N N N 171.682 168.081 150.723 8.948  -1.536 -0.587 O2  VNZ 33 
VNZ C17 C27 C 0 1 N N N N N N 172.232 167.078 151.576 8.966  -2.796 -1.261 C17 VNZ 34 
VNZ H1  H1  H 0 1 N N N N N N 167.989 169.516 153.528 -5.212 2.843  0.691  H1  VNZ 35 
VNZ H2  H2  H 0 1 N N N N N N 169.626 170.231 153.724 -5.592 2.792  -1.043 H2  VNZ 36 
VNZ H3  H3  H 0 1 N N N N N N 170.302 169.579 155.733 -6.064 1.129  1.969  H3  VNZ 37 
VNZ H4  H4  H 0 1 N N N N N N 171.263 167.389 158.546 -7.441 -0.822 4.402  H4  VNZ 38 
VNZ H5  H5  H 0 1 N N N N N N 169.793 167.206 157.531 -5.997 -0.029 3.728  H5  VNZ 39 
VNZ H6  H6  H 0 1 N N N N N N 171.204 168.127 156.909 -7.620 0.522  3.248  H6  VNZ 40 
VNZ H7  H7  H 0 1 N N N N N N 166.784 169.674 161.155 -7.459 -3.314 -1.722 H7  VNZ 41 
VNZ H8  H8  H 0 1 N N N N N N 165.986 170.555 159.808 -5.844 -3.879 -1.230 H8  VNZ 42 
VNZ H9  H9  H 0 1 N N N N N N 166.387 168.813 159.629 -7.296 -4.761 -0.698 H9  VNZ 43 
VNZ H10 H10 H 0 1 N N N N N N 166.902 173.288 154.612 -2.957 0.822  -3.369 H10 VNZ 44 
VNZ H11 H11 H 0 1 N N N N N N 165.267 172.948 153.949 -2.946 -0.347 -2.037 H11 VNZ 45 
VNZ H12 H12 H 0 1 N N N N N N 165.397 171.978 156.117 -5.283 1.448  -2.755 H12 VNZ 46 
VNZ H13 H13 H 0 1 N N N N N N 165.414 170.658 154.899 -5.115 -0.251 -3.240 H13 VNZ 47 
VNZ H14 H14 H 0 1 N N N N N N 166.171 171.134 157.878 -5.928 -1.907 -1.912 H14 VNZ 48 
VNZ H15 H15 H 0 1 N N N N N N 166.383 170.693 151.392 -1.181 1.831  -2.597 H15 VNZ 49 
VNZ H16 H16 H 0 1 N N N N N N 165.751 172.374 151.341 -1.380 3.047  -1.313 H16 VNZ 50 
VNZ H17 H17 H 0 1 N N N N N N 164.028 171.898 152.873 -1.039 1.290  0.403  H17 VNZ 51 
VNZ H18 H18 H 0 1 N N N N N N 164.807 170.371 153.408 -0.840 0.074  -0.881 H18 VNZ 52 
VNZ H19 H19 H 0 1 N N N N N N 163.865 170.630 150.577 1.116  1.320  -1.757 H19 VNZ 53 
VNZ H20 H20 H 0 1 N N N N N N 162.666 170.380 151.891 0.917  2.536  -0.473 H20 VNZ 54 
VNZ H22 H22 H 0 1 N N N N N N 163.616 168.681 153.638 0.176  0.763  1.756  H22 VNZ 55 
VNZ H23 H23 H 0 1 N N N N N N 164.317 167.200 152.903 1.829  0.313  2.239  H23 VNZ 56 
VNZ H24 H24 H 0 1 N N N N N N 165.351 168.645 153.172 1.459  1.995  1.790  H24 VNZ 57 
VNZ H25 H25 H 0 1 N N N N N N 165.081 169.191 149.835 3.202  0.672  -1.131 H25 VNZ 58 
VNZ H26 H26 H 0 1 N N N N N N 164.407 167.531 149.965 3.324  1.788  0.250  H26 VNZ 59 
VNZ H27 H27 H 0 1 N N N N N N 166.188 167.601 152.104 3.417  -0.356 1.751  H27 VNZ 60 
VNZ H28 H28 H 0 1 N N N N N N 166.456 166.533 149.187 3.582  -2.464 0.613  H28 VNZ 61 
VNZ H29 H29 H 0 1 N N N N N N 166.652 165.627 150.726 3.386  -1.613 -0.984 H29 VNZ 62 
VNZ H30 H30 H 0 1 N N N N N N 167.921 170.574 150.948 6.330  1.571  1.390  H30 VNZ 63 
VNZ H31 H31 H 0 1 N N N N N N 172.024 171.377 152.269 9.566  2.600  1.545  H31 VNZ 64 
VNZ H32 H32 H 0 1 N N N N N N 170.593 170.647 153.074 7.950  2.776  0.821  H32 VNZ 65 
VNZ H33 H33 H 0 1 N N N N N N 171.901 169.593 152.439 8.140  1.942  2.383  H33 VNZ 66 
VNZ H34 H34 H 0 1 N N N N N N 169.919 166.077 150.235 6.665  -2.750 -0.956 H34 VNZ 67 
VNZ H35 H35 H 0 1 N N N N N N 173.330 167.139 151.554 8.365  -2.732 -2.168 H35 VNZ 68 
VNZ H36 H36 H 0 1 N N N N N N 171.877 167.237 152.605 9.992  -3.053 -1.523 H36 VNZ 69 
VNZ H37 H37 H 0 1 N N N N N N 171.913 166.085 151.227 8.555  -3.565 -0.606 H37 VNZ 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VNZ C13 C14 SING N N 1  
VNZ C13 C12 SING N N 2  
VNZ C15 C14 SING Y N 3  
VNZ C15 C16 DOUB Y N 4  
VNZ C14 C21 DOUB Y N 5  
VNZ C11 C12 SING N N 6  
VNZ C11 N1  SING N N 7  
VNZ C16 O2  SING N N 8  
VNZ C16 C18 SING Y N 9  
VNZ C21 C20 SING Y N 10 
VNZ C21 C12 SING N N 11 
VNZ O2  C17 SING N N 12 
VNZ C18 C20 DOUB Y N 13 
VNZ C18 O3  SING N N 14 
VNZ O3  C19 SING N N 15 
VNZ N1  C9  SING N N 16 
VNZ N1  C10 SING N N 17 
VNZ C9  C8  SING N N 18 
VNZ C7  C8  SING N N 19 
VNZ C7  N   SING N N 20 
VNZ O1  C6  DOUB N N 21 
VNZ C6  N   SING N N 22 
VNZ C6  C5  SING N N 23 
VNZ N   C22 SING N N 24 
VNZ C5  C4  SING N N 25 
VNZ C22 C23 SING N N 26 
VNZ C23 C3  SING N N 27 
VNZ C4  C3  DOUB Y N 28 
VNZ C4  C24 SING Y N 29 
VNZ C3  C2  SING Y N 30 
VNZ C24 C25 DOUB Y N 31 
VNZ C2  C1  DOUB Y N 32 
VNZ C25 C1  SING Y N 33 
VNZ C25 O4  SING N N 34 
VNZ C26 O4  SING N N 35 
VNZ C1  O   SING N N 36 
VNZ O   C   SING N N 37 
VNZ C5  H1  SING N N 38 
VNZ C5  H2  SING N N 39 
VNZ C24 H3  SING N N 40 
VNZ C26 H4  SING N N 41 
VNZ C26 H5  SING N N 42 
VNZ C26 H6  SING N N 43 
VNZ C   H7  SING N N 44 
VNZ C   H8  SING N N 45 
VNZ C   H9  SING N N 46 
VNZ C22 H10 SING N N 47 
VNZ C22 H11 SING N N 48 
VNZ C23 H12 SING N N 49 
VNZ C23 H13 SING N N 50 
VNZ C2  H14 SING N N 51 
VNZ C7  H15 SING N N 52 
VNZ C7  H16 SING N N 53 
VNZ C8  H17 SING N N 54 
VNZ C8  H18 SING N N 55 
VNZ C9  H19 SING N N 56 
VNZ C9  H20 SING N N 57 
VNZ C10 H22 SING N N 58 
VNZ C10 H23 SING N N 59 
VNZ C10 H24 SING N N 60 
VNZ C11 H25 SING N N 61 
VNZ C11 H26 SING N N 62 
VNZ C12 H27 SING N N 63 
VNZ C13 H28 SING N N 64 
VNZ C13 H29 SING N N 65 
VNZ C20 H30 SING N N 66 
VNZ C19 H31 SING N N 67 
VNZ C19 H32 SING N N 68 
VNZ C19 H33 SING N N 69 
VNZ C15 H34 SING N N 70 
VNZ C17 H35 SING N N 71 
VNZ C17 H36 SING N N 72 
VNZ C17 H37 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VNZ InChI            InChI                1.06  "InChI=1S/C27H36N2O5/c1-28(17-21-11-20-14-25(33-4)26(34-5)16-22(20)21)8-6-9-29-10-7-18-12-23(31-2)24(32-3)13-19(18)15-27(29)30/h12-14,16,21H,6-11,15,17H2,1-5H3/t21-/m1/s1" 
VNZ InChIKey         InChI                1.06  ACRHBAYQBXXRTO-OAQYLSRUSA-N                                                                                                                                                 
VNZ SMILES_CANONICAL CACTVS               3.385 "COc1cc2CCN(CCCN(C)C[C@H]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC"                                                                                                                 
VNZ SMILES           CACTVS               3.385 "COc1cc2CCN(CCCN(C)C[CH]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC"                                                                                                                  
VNZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)C[C@H]3Cc4c3cc(c(c4)OC)OC"                                                                                                                 
VNZ SMILES           "OpenEye OEToolkits" 2.0.7 "CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)CC3Cc4c3cc(c(c4)OC)OC"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           VNZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[3-[[(7~{S})-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1~{H}-3-benzazepin-4-one" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 VNZ "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1,3,5-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one"    PDB ? 
2 VNZ "3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one" PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VNZ "Create component" 2023-03-20 PDBE 
VNZ "Modify synonyms"  2023-05-11 PDBE 
VNZ "Initial release"  2024-08-14 RCSB 
# 
