data_RDZ
#

_chem_comp.id                                   RDZ
_chem_comp.name                                 "Geranyl phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H19 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(2E)-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate; [(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-28
_chem_comp.pdbx_modified_date                   2022-01-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       234.229
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RDZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AG5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RDZ  C1   C1   C  0  1  N  N  N   -6.471  15.755  -0.365  -4.128   2.128  -0.306  C1   RDZ   1  
RDZ  C2   C2   C  0  1  N  N  N   -6.568  17.212  -0.038  -4.981   0.913  -0.049  C2   RDZ   2  
RDZ  C3   C3   C  0  1  N  N  N   -6.782  17.663   1.186  -4.478  -0.286  -0.207  C3   RDZ   3  
RDZ  C4   C4   C  0  1  N  N  N   -7.870  17.299   2.157  -3.015  -0.453  -0.525  C4   RDZ   4  
RDZ  C5   C5   C  0  1  N  N  N   -8.394  15.863   2.102  -2.373  -1.388   0.501  C5   RDZ   5  
RDZ  C6   C6   C  0  1  N  N  N   -8.857  15.313   3.426  -0.909  -1.556   0.183  C6   RDZ   6  
RDZ  C7   C7   C  0  1  N  N  N   -9.028  16.113   4.468  -0.019  -0.801   0.778  C7   RDZ   7  
RDZ  C8   C8   C  0  1  N  N  N   -9.172  15.720   5.889   1.444  -0.968   0.459  C8   RDZ   8  
RDZ  O1   O1   O  0  1  N  N  N   -7.962  16.096   6.578   2.042   0.317   0.277  O1   RDZ   9  
RDZ  P1   P1   P  0  1  N  N  N   -7.983  16.490   8.164   3.599   0.517  -0.077  P1   RDZ  10  
RDZ  O2   O2   O  0  1  N  N  N   -8.512  15.381   9.004   3.894   2.079  -0.339  O2   RDZ  11  
RDZ  O3   O3   O  0  1  N  N  N   -6.548  16.793   8.396   4.500   0.000   1.153  O3   RDZ  12  
RDZ  O4   O4   O  0  1  N  N  N   -8.898  17.715   8.310   3.933  -0.258  -1.293  O4   RDZ  13  
RDZ  C9   C9   C  0  1  N  N  N   -9.124  13.835   3.463  -0.470  -2.591  -0.821  C9   RDZ  14  
RDZ  C10  C10  C  0  1  N  N  N   -6.418  18.116  -1.216  -6.414   1.078   0.390  C10  RDZ  15  
RDZ  H2   H1   H  0  1  N  N  N   -6.592  15.163   0.555  -3.714   2.075  -1.313  H2   RDZ  16  
RDZ  H3   H2   H  0  1  N  N  N   -7.262  15.486  -1.080  -4.738   3.027  -0.212  H3   RDZ  17  
RDZ  H1   H3   H  0  1  N  N  N   -5.487  15.544  -0.810  -3.316   2.162   0.419  H1   RDZ  18  
RDZ  H4   H5   H  0  1  N  N  N   -6.074  18.398   1.539  -5.112  -1.155  -0.108  H4   RDZ  19  
RDZ  H5   H7   H  0  1  N  N  N   -7.482  17.473   3.172  -2.906  -0.879  -1.523  H5   RDZ  20  
RDZ  H6   H8   H  0  1  N  N  N   -8.721  17.971   1.970  -2.522   0.519  -0.490  H6   RDZ  21  
RDZ  H7   H9   H  0  1  N  N  N   -9.243  15.834   1.403  -2.481  -0.962   1.499  H7   RDZ  22  
RDZ  H8   H10  H  0  1  N  N  N   -7.587  15.217   1.726  -2.866  -2.360   0.465  H8   RDZ  23  
RDZ  H9   H12  H  0  1  N  N  N   -9.067  17.172   4.258  -0.334  -0.059   1.497  H9   RDZ  24  
RDZ  H10  H14  H  0  1  N  N  N  -10.033  16.240   6.335   1.939  -1.485   1.282  H10  RDZ  25  
RDZ  H11  H15  H  0  1  N  N  N   -9.322  14.633   5.963   1.553  -1.552  -0.455  H11  RDZ  26  
RDZ  H22  H16  H  0  1  N  N  N   -9.300  15.669   9.449   4.815   2.274  -0.558  H22  RDZ  27  
RDZ  H23  H17  H  0  1  N  N  N   -6.447  17.716   8.599   4.334   0.465   1.985  H23  RDZ  28  
RDZ  H13  H18  H  0  1  N  N  N   -9.454  13.547   4.472  -0.449  -2.146  -1.816  H13  RDZ  29  
RDZ  H14  H19  H  0  1  N  N  N   -9.910  13.586   2.735   0.526  -2.948  -0.562  H14  RDZ  30  
RDZ  H12  H20  H  0  1  N  N  N   -8.203  13.290   3.209  -1.170  -3.426  -0.811  H12  RDZ  31  
RDZ  H16  H21  H  0  1  N  N  N   -6.502  19.163  -0.889  -6.651   2.139   0.466  H16  RDZ  32  
RDZ  H17  H22  H  0  1  N  N  N   -5.433  17.954  -1.679  -7.074   0.609  -0.340  H17  RDZ  33  
RDZ  H15  H23  H  0  1  N  N  N   -7.208  17.897  -1.949  -6.552   0.604   1.362  H15  RDZ  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RDZ  C10  C2   SING  N  N   1  
RDZ  C1   C2   SING  N  N   2  
RDZ  C2   C3   DOUB  N  N   3  
RDZ  C3   C4   SING  N  N   4  
RDZ  C5   C4   SING  N  N   5  
RDZ  C5   C6   SING  N  N   6  
RDZ  C6   C9   SING  N  N   7  
RDZ  C6   C7   DOUB  N  E   8  
RDZ  C7   C8   SING  N  N   9  
RDZ  C8   O1   SING  N  N  10  
RDZ  O1   P1   SING  N  N  11  
RDZ  P1   O4   DOUB  N  N  12  
RDZ  P1   O3   SING  N  N  13  
RDZ  P1   O2   SING  N  N  14  
RDZ  C1   H2   SING  N  N  15  
RDZ  C1   H3   SING  N  N  16  
RDZ  C1   H1   SING  N  N  17  
RDZ  C3   H4   SING  N  N  18  
RDZ  C4   H5   SING  N  N  19  
RDZ  C4   H6   SING  N  N  20  
RDZ  C5   H7   SING  N  N  21  
RDZ  C5   H8   SING  N  N  22  
RDZ  C7   H9   SING  N  N  23  
RDZ  C8   H10  SING  N  N  24  
RDZ  C8   H11  SING  N  N  25  
RDZ  O2   H22  SING  N  N  26  
RDZ  O3   H23  SING  N  N  27  
RDZ  C9   H13  SING  N  N  28  
RDZ  C9   H14  SING  N  N  29  
RDZ  C9   H12  SING  N  N  30  
RDZ  C10  H16  SING  N  N  31  
RDZ  C10  H17  SING  N  N  32  
RDZ  C10  H15  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RDZ  InChI             InChI                 1.03   "InChI=1S/C10H19O4P/c1-9(2)5-4-6-10(3)7-8-14-15(11,12)13/h5,7H,4,6,8H2,1-3H3,(H2,11,12,13)/b10-7+"  
RDZ  InChIKey          InChI                 1.03   FFOWJDCTFSWUMJ-JXMROGBWSA-N  
RDZ  SMILES_CANONICAL  CACTVS                3.385  "CC(C)=CCC\C(C)=C\CO[P](O)(O)=O"  
RDZ  SMILES            CACTVS                3.385  "CC(C)=CCCC(C)=CCO[P](O)(O)=O"  
RDZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=CCC/C(=C/COP(=O)(O)O)/C)C"  
RDZ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=CCCC(=CCOP(=O)(O)O)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          RDZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RDZ  "[(2E)-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"     AUTHOR  ?  
2  RDZ  "[(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate"  PDB     ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RDZ  "Create component"  2020-09-28  PDBE  
RDZ  "Modify synonyms"   2021-03-13  RCSB  
RDZ  "Modify synonyms"   2021-08-10  PDBE  
RDZ  "Initial release"   2022-02-02  RCSB  
##
