data_PGZ
# 
_chem_comp.id                                    PGZ 
_chem_comp.name                                  "METHYL 2-O-[(S)-(BENZYLOXY)(HYDROXY)PHOSPHORYL]-3-DEOXY-3-{[(4-METHYLPHENYL)CARBONYL]AMINO}-1-THIO-BETA-D-GALACTOPYRANOSIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H28 N O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-10 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        497.498 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PGZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZXE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PGZ O1B  O1B  O 0 1 N N N 18.300 -10.618 1.275  2.348  2.048  -2.032 O1B  PGZ 1  
PGZ C1B  C1B  C 0 1 N N N 18.112 -10.910 0.097  1.870  2.194  -0.924 C1B  PGZ 2  
PGZ C5B  C5B  C 0 1 Y N N 19.197 -10.603 -0.899 1.506  3.546  -0.449 C5B  PGZ 3  
PGZ C6B  C6B  C 0 1 Y N N 19.025 -10.892 -2.253 1.711  4.656  -1.270 C6B  PGZ 4  
PGZ C7B  C7B  C 0 1 Y N N 20.026 -10.578 -3.175 1.369  5.915  -0.820 C7B  PGZ 5  
PGZ C2B  C2B  C 0 1 Y N N 21.205 -9.968  -2.738 0.825  6.078  0.442  C2B  PGZ 6  
PGZ C8B  C8B  C 0 1 N N N 22.282 -9.633  -3.738 0.455  7.456  0.926  C8B  PGZ 7  
PGZ C3B  C3B  C 0 1 Y N N 21.377 -9.662  -1.391 0.619  4.982  1.260  C3B  PGZ 8  
PGZ C4B  C4B  C 0 1 Y N N 20.370 -9.973  -0.475 0.951  3.717  0.820  C4B  PGZ 9  
PGZ N1B  N1B  N 0 1 N N N 16.963 -11.469 -0.318 1.666  1.124  -0.132 N1B  PGZ 10 
PGZ C3A  C3A  C 0 1 N N S 15.876 -11.739 0.625  2.021  -0.216 -0.605 C3A  PGZ 11 
PGZ C4A  C4A  C 0 1 N N R 14.664 -10.939 0.138  3.505  -0.481 -0.330 C4A  PGZ 12 
PGZ O4A  O4A  O 0 1 N N N 14.292 -11.328 -1.199 3.768  -0.322 1.065  O4A  PGZ 13 
PGZ C2D  C2D  C 0 1 N N R 13.532 -11.210 1.132  3.848  -1.911 -0.756 C2D  PGZ 14 
PGZ C6A  C6A  C 0 1 N N N 12.266 -10.426 0.805  5.314  -2.203 -0.429 C6A  PGZ 15 
PGZ O6A  O6A  O 0 1 N N N 11.268 -10.704 1.802  5.666  -3.493 -0.931 O6A  PGZ 16 
PGZ O5A  O5A  O 0 1 N N N 13.236 -12.610 1.157  3.010  -2.830 -0.051 O5A  PGZ 17 
PGZ C1A  C1A  C 0 1 N N S 14.339 -13.428 1.589  1.615  -2.661 -0.306 C1A  PGZ 18 
PGZ S1D  S1D  S 0 1 N N N 13.811 -15.113 1.643  0.675  -3.906 0.619  S1D  PGZ 19 
PGZ C1D  C1D  C 0 1 N N N 12.648 -15.257 2.959  1.207  -5.466 -0.140 C1D  PGZ 20 
PGZ C2A  C2A  C 0 1 N N R 15.542 -13.233 0.661  1.182  -1.261 0.137  C2A  PGZ 21 
PGZ O4P  O4P  O 0 1 N N N 16.663 -13.932 1.190  -0.200 -1.069 -0.170 O4P  PGZ 22 
PGZ P    P    P 0 1 N N N 17.460 -15.025 0.315  -1.311 -0.744 0.950  P    PGZ 23 
PGZ O3P  O3P  O 0 1 N N N 18.898 -14.947 0.770  -1.003 0.692  1.610  O3P  PGZ 24 
PGZ O2P  O2P  O 0 1 N N N 17.118 -14.872 -1.145 -1.273 -1.787 1.999  O2P  PGZ 25 
PGZ O1P  O1P  O 0 1 N N N 16.811 -16.405 0.825  -2.769 -0.721 0.269  O1P  PGZ 26 
PGZ C1C  C1C  C 0 1 N N N 17.009 -16.855 2.161  -3.976 -0.562 1.018  C1C  PGZ 27 
PGZ C5C  C5C  C 0 1 Y N N 16.353 -18.201 2.344  -5.156 -0.584 0.081  C5C  PGZ 28 
PGZ C6C  C6C  C 0 1 Y N N 16.723 -19.273 1.530  -5.775 -1.783 -0.223 C6C  PGZ 29 
PGZ C7C  C7C  C 0 1 Y N N 16.111 -20.515 1.713  -6.857 -1.803 -1.082 C7C  PGZ 30 
PGZ C2C  C2C  C 0 1 Y N N 15.139 -20.672 2.703  -7.321 -0.625 -1.638 C2C  PGZ 31 
PGZ C4C  C4C  C 0 1 Y N N 15.381 -18.358 3.336  -5.622 0.594  -0.470 C4C  PGZ 32 
PGZ C3C  C3C  C 0 1 Y N N 14.770 -19.599 3.516  -6.702 0.573  -1.333 C3C  PGZ 33 
PGZ H1B  H1B  H 0 1 N N N 16.849 -11.704 -1.283 1.285  1.240  0.752  H1B  PGZ 34 
PGZ H6B  H6B  H 0 1 N N N 18.113 -11.361 -2.590 2.135  4.530  -2.255 H6B  PGZ 35 
PGZ H4B  H4B  H 0 1 N N N 20.499 -9.725  0.568  0.787  2.862  1.459  H4B  PGZ 36 
PGZ H7B  H7B  H 0 1 N N N 19.889 -10.806 -4.222 1.526  6.775  -1.454 H7B  PGZ 37 
PGZ H8B1 H8B1 H 0 0 N N N 22.114 -8.620  -4.133 -0.578 7.673  0.652  H8B1 PGZ 38 
PGZ H8B2 H8B2 H 0 0 N N N 23.265 -9.676  -3.246 0.559  7.500  2.010  H8B2 PGZ 39 
PGZ H8B3 H8B3 H 0 0 N N N 22.254 -10.359 -4.564 1.115  8.193  0.467  H8B3 PGZ 40 
PGZ H3B  H3B  H 0 1 N N N 22.286 -9.186  -1.055 0.195  5.116  2.244  H3B  PGZ 41 
PGZ H3A  H3A  H 0 1 N N N 16.154 -11.402 1.635  1.830  -0.287 -1.676 H3A  PGZ 42 
PGZ H4A  H4A  H 0 1 N N N 14.912 -9.868  0.164  4.112  0.225  -0.898 H4A  PGZ 43 
PGZ H2A  H2A  H 0 1 N N N 15.292 -13.583 -0.351 1.336  -1.156 1.211  H2A  PGZ 44 
PGZ HA   HA   H 0 1 N N N 13.540 -10.820 -1.479 4.690  -0.475 1.312  HA   PGZ 45 
PGZ H2D  H2D  H 0 1 N N N 13.876 -10.896 2.129  3.686  -2.020 -1.828 H2D  PGZ 46 
PGZ H6A1 H6A1 H 0 0 N N N 12.491 -9.349  0.800  5.947  -1.447 -0.894 H6A1 PGZ 47 
PGZ H6A2 H6A2 H 0 0 N N N 11.892 -10.727 -0.184 5.457  -2.181 0.651  H6A2 PGZ 48 
PGZ H6A  H6A  H 0 1 N N N 10.477 -10.218 1.603  6.583  -3.745 -0.759 H6A  PGZ 49 
PGZ H1A  H1A  H 0 1 N N N 14.632 -13.161 2.615  1.423  -2.780 -1.373 H1A  PGZ 50 
PGZ H1D1 H1D1 H 0 0 N N N 12.295 -16.297 3.025  2.284  -5.579 -0.020 H1D1 PGZ 51 
PGZ H1D2 H1D2 H 0 0 N N N 13.129 -14.973 3.906  0.698  -6.298 0.346  H1D2 PGZ 52 
PGZ H1D3 H1D3 H 0 0 N N N 11.794 -14.591 2.768  0.958  -5.457 -1.201 H1D3 PGZ 53 
PGZ H3P  H3P  H 0 1 N N N 19.461 -14.799 0.019  -1.012 1.425  0.978  H3P  PGZ 54 
PGZ H1C1 H1C1 H 0 0 N N N 18.087 -16.943 2.362  -4.067 -1.377 1.737  H1C1 PGZ 55 
PGZ H1C2 H1C2 H 0 0 N N N 16.563 -16.132 2.861  -3.951 0.389  1.549  H1C2 PGZ 56 
PGZ H6C  H6C  H 0 1 N N N 17.475 -19.143 0.766  -5.412 -2.703 0.212  H6C  PGZ 57 
PGZ H4C  H4C  H 0 1 N N N 15.104 -17.522 3.961  -5.142 1.531  -0.229 H4C  PGZ 58 
PGZ H7C  H7C  H 0 1 N N N 16.389 -21.352 1.090  -7.340 -2.739 -1.320 H7C  PGZ 59 
PGZ H2C  H2C  H 0 1 N N N 14.668 -21.634 2.841  -8.166 -0.641 -2.310 H2C  PGZ 60 
PGZ H3C  H3C  H 0 1 N N N 14.017 -19.729 4.279  -7.064 1.493  -1.768 H3C  PGZ 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PGZ O1B C1B  DOUB N N 1  
PGZ C1B C5B  SING N N 2  
PGZ C1B N1B  SING N N 3  
PGZ C5B C6B  SING Y N 4  
PGZ C5B C4B  DOUB Y N 5  
PGZ C6B C7B  DOUB Y N 6  
PGZ C7B C2B  SING Y N 7  
PGZ C2B C8B  SING N N 8  
PGZ C2B C3B  DOUB Y N 9  
PGZ C3B C4B  SING Y N 10 
PGZ N1B C3A  SING N N 11 
PGZ C3A C4A  SING N N 12 
PGZ C3A C2A  SING N N 13 
PGZ C4A O4A  SING N N 14 
PGZ C4A C2D  SING N N 15 
PGZ C2D C6A  SING N N 16 
PGZ C2D O5A  SING N N 17 
PGZ C6A O6A  SING N N 18 
PGZ O5A C1A  SING N N 19 
PGZ C1A S1D  SING N N 20 
PGZ C1A C2A  SING N N 21 
PGZ S1D C1D  SING N N 22 
PGZ C2A O4P  SING N N 23 
PGZ O4P P    SING N N 24 
PGZ P   O3P  SING N N 25 
PGZ P   O2P  DOUB N N 26 
PGZ P   O1P  SING N N 27 
PGZ O1P C1C  SING N N 28 
PGZ C1C C5C  SING N N 29 
PGZ C5C C6C  SING Y N 30 
PGZ C5C C4C  DOUB Y N 31 
PGZ C6C C7C  DOUB Y N 32 
PGZ C7C C2C  SING Y N 33 
PGZ C2C C3C  DOUB Y N 34 
PGZ N1B H1B  SING N N 35 
PGZ C6B H6B  SING N N 36 
PGZ C4B H4B  SING N N 37 
PGZ C7B H7B  SING N N 38 
PGZ C8B H8B1 SING N N 39 
PGZ C8B H8B2 SING N N 40 
PGZ C8B H8B3 SING N N 41 
PGZ C3B H3B  SING N N 42 
PGZ C3A H3A  SING N N 43 
PGZ C4A H4A  SING N N 44 
PGZ C2A H2A  SING N N 45 
PGZ O4A HA   SING N N 46 
PGZ C2D H2D  SING N N 47 
PGZ C6A H6A1 SING N N 48 
PGZ C6A H6A2 SING N N 49 
PGZ O6A H6A  SING N N 50 
PGZ C1A H1A  SING N N 51 
PGZ C1D H1D1 SING N N 52 
PGZ C1D H1D2 SING N N 53 
PGZ C1D H1D3 SING N N 54 
PGZ O3P H3P  SING N N 55 
PGZ C1C H1C1 SING N N 56 
PGZ C1C H1C2 SING N N 57 
PGZ C6C H6C  SING N N 58 
PGZ C4C H4C  SING N N 59 
PGZ C7C H7C  SING N N 60 
PGZ C2C H2C  SING N N 61 
PGZ C3C H3C  SING N N 62 
PGZ C4C C3C  SING Y N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PGZ SMILES           ACDLabs              12.01 "O=P(OC2C(NC(=O)c1ccc(cc1)C)C(O)C(OC2SC)CO)(OCc3ccccc3)O"                                                                                                                                                    
PGZ InChI            InChI                1.03  "InChI=1S/C22H28NO8PS/c1-14-8-10-16(11-9-14)21(26)23-18-19(25)17(12-24)30-22(33-2)20(18)31-32(27,28)29-13-15-6-4-3-5-7-15/h3-11,17-20,22,24-25H,12-13H2,1-2H3,(H,23,26)(H,27,28)/t17-,18+,19+,20-,22+/m1/s1" 
PGZ InChIKey         InChI                1.03  IDAWZVIHHBVHNS-QWPXSNKBSA-N                                                                                                                                                                                  
PGZ SMILES_CANONICAL CACTVS               3.385 "CS[C@@H]1O[C@H](CO)[C@H](O)[C@H](NC(=O)c2ccc(C)cc2)[C@H]1O[P](O)(=O)OCc3ccccc3"                                                                                                                             
PGZ SMILES           CACTVS               3.385 "CS[CH]1O[CH](CO)[CH](O)[CH](NC(=O)c2ccc(C)cc2)[CH]1O[P](O)(=O)OCc3ccccc3"                                                                                                                                   
PGZ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)C(=O)N[C@H]2[C@H]([C@H](O[C@H]([C@@H]2OP(=O)(O)OCc3ccccc3)SC)CO)O"                                                                                                                               
PGZ SMILES           "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)C(=O)NC2C(C(OC(C2OP(=O)(O)OCc3ccccc3)SC)CO)O"                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PGZ "SYSTEMATIC NAME" ACDLabs              12.01 "methyl 2-O-[(S)-(benzyloxy)(hydroxy)phosphoryl]-3-deoxy-3-[(4-methylbenzoyl)amino]-1-thio-beta-D-galactopyranoside"                             
PGZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-4-[(4-methylphenyl)carbonylamino]-2-methylsulfanyl-5-oxidanyl-oxan-3-yl] (phenylmethyl) hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PGZ "Create component"  2011-08-10 EBI  
PGZ "Modify descriptor" 2014-09-05 RCSB 
# 
