data_NYZ
#

_chem_comp.id                                   NYZ
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N5 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-13
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       441.228
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NYZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TW0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NYZ  C8      C1   C  0  1  Y  N  N  -14.509  22.053  -33.875   2.314  -1.416  -0.648  C8      NYZ   1  
NYZ  C5      C2   C  0  1  Y  N  N  -13.884  23.479  -35.347   4.430  -1.755  -0.336  C5      NYZ   2  
NYZ  C6      C3   C  0  1  N  N  N  -13.337  24.554  -36.105   5.765  -2.219  -0.254  C6      NYZ   3  
NYZ  PB      P1   P  0  1  N  N  N  -17.369  20.174  -28.884  -6.154  -1.257   0.378  PB      NYZ   4  
NYZ  O1B     O1   O  0  1  N  N  N  -16.065  20.723  -29.362  -6.042  -1.924  -0.939  O1B     NYZ   5  
NYZ  O2B     O2   O  0  1  N  N  N  -18.570  21.058  -29.278  -7.076   0.055   0.238  O2B     NYZ   6  
NYZ  O3B     O3   O  0  1  N  N  N  -17.440  19.993  -27.360  -6.819  -2.270   1.437  O3B     NYZ   7  
NYZ  PA      P2   P  0  1  N  N  N  -19.002  18.304  -30.623  -3.741   0.373  -0.243  PA      NYZ   8  
NYZ  O1A     O4   O  0  1  N  N  N  -20.390  18.851  -30.354  -4.664   1.685  -0.382  O1A     NYZ   9  
NYZ  O2A     O5   O  0  1  N  N  N  -19.100  16.757  -30.809  -3.629  -0.294  -1.559  O2A     NYZ  10  
NYZ  C3A     C4   C  0  1  N  N  N  -17.676  18.498  -29.436  -4.494  -0.774   0.957  C3A     NYZ  11  
NYZ  "O5'"   O6   O  0  1  N  N  N  -18.365  18.955  -31.907  -2.276   0.799   0.269  "O5'"   NYZ  12  
NYZ  "C5'"   C5   C  0  1  N  N  N  -17.028  18.634  -32.352  -1.387   1.610  -0.502  "C5'"   NYZ  13  
NYZ  "C4'"   C6   C  0  1  N  N  R  -16.844  18.892  -33.827  -0.086   1.823   0.275  "C4'"   NYZ  14  
NYZ  "O4'"   O7   O  0  1  N  N  N  -16.792  20.311  -34.075   0.616   0.575   0.406  "O4'"   NYZ  15  
NYZ  "C3'"   C7   C  0  1  N  N  S  -15.534  18.366  -34.392   0.832   2.791  -0.495  "C3'"   NYZ  16  
NYZ  "O3'"   O8   O  0  1  N  N  N  -15.609  16.972  -34.673   1.106   3.953   0.290  "O3'"   NYZ  17  
NYZ  "C2'"   C8   C  0  1  N  N  R  -15.339  19.237  -35.638   2.127   1.976  -0.734  "C2'"   NYZ  18  
NYZ  "O2'"   O9   O  0  1  N  N  N  -15.954  18.693  -36.801   3.286   2.789  -0.537  "O2'"   NYZ  19  
NYZ  "C1'"   C9   C  0  1  N  N  R  -16.043  20.549  -35.255   2.026   0.879   0.362  "C1'"   NYZ  20  
NYZ  N9      N1   N  0  1  Y  N  N  -15.127  21.688  -35.034   2.799  -0.305  -0.022  N9      NYZ  21  
NYZ  N7      N2   N  0  1  Y  N  N  -13.741  23.113  -34.016   3.278  -2.271  -0.829  N7      NYZ  22  
NYZ  N6      N3   N  0  1  N  N  N  -12.500  25.450  -35.569   6.102  -3.455  -0.751  N6      NYZ  23  
NYZ  N1      N4   N  0  1  N  N  N  -13.627  24.684  -37.411   6.688  -1.447   0.306  N1      NYZ  24  
NYZ  C2      C10  C  0  1  N  N  N  -14.482  23.810  -38.023   6.387  -0.246   0.794  C2      NYZ  25  
NYZ  N3      N5   N  0  1  N  N  N  -15.043  22.787  -37.300   5.133   0.244   0.748  N3      NYZ  26  
NYZ  C4      C11  C  0  1  Y  N  N  -14.737  22.598  -35.979   4.130  -0.498   0.182  C4      NYZ  27  
NYZ  O       O10  O  0  1  N  N  N  -14.779  23.918  -39.220   7.269   0.427   1.300  O       NYZ  28  
NYZ  H8      H1   H  0  1  N  N  N  -14.636  21.528  -32.940   1.286  -1.565  -0.944  H8      NYZ  29  
NYZ  H1      H2   H  0  1  N  N  N  -18.262  21.813  -29.766  -7.194   0.543   1.064  H1      NYZ  30  
NYZ  H2      H3   H  0  1  N  N  N  -16.619  20.269  -26.969  -7.706  -2.569   1.193  H2      NYZ  31  
NYZ  H4      H4   H  0  1  N  N  N  -21.018  18.138  -30.356  -4.781   2.173   0.444  H4      NYZ  32  
NYZ  H3A2    H5   H  0  0  N  N  N  -17.921  17.890  -28.552  -4.577  -0.283   1.927  H3A2    NYZ  33  
NYZ  H3A1    H6   H  0  0  N  N  N  -16.752  18.119  -29.896  -3.870  -1.663   1.052  H3A1    NYZ  34  
NYZ  "H5'1"  H7   H  0  0  N  N  N  -16.833  17.570  -32.151  -1.168   1.111  -1.446  "H5'1"  NYZ  35  
NYZ  "H5'2"  H8   H  0  0  N  N  N  -16.310  19.251  -31.792  -1.854   2.574  -0.700  "H5'2"  NYZ  36  
NYZ  "H4'"   H9   H  0  1  N  N  N  -17.681  18.441  -34.381  -0.308   2.229   1.263  "H4'"   NYZ  37  
NYZ  "H3'"   H10  H  0  1  N  N  N  -14.723  18.573  -33.678   0.378   3.073  -1.445  "H3'"   NYZ  38  
NYZ  "HO3'"  H11  H  0  0  N  N  N  -15.729  16.491  -33.863   1.681   4.596  -0.147  "HO3'"  NYZ  39  
NYZ  "H2'"   H12  H  0  1  N  N  N  -14.267  19.423  -35.800   2.129   1.533  -1.730  "H2'"   NYZ  40  
NYZ  "HO2'"  H13  H  0  0  N  N  N  -15.520  17.882  -37.039   3.392   3.488  -1.196  "HO2'"  NYZ  41  
NYZ  "H1'"   H14  H  0  1  N  N  N  -16.730  20.810  -36.073   2.368   1.264   1.323  "H1'"   NYZ  42  
NYZ  H61     H15  H  0  1  N  N  N  -12.117  26.179  -36.137   5.424  -4.015  -1.160  H61     NYZ  43  
NYZ  H62     H16  H  0  1  N  N  N  -12.257  25.391  -34.601   7.019  -3.768  -0.692  H62     NYZ  44  
NYZ  H3      H17  H  0  1  N  N  N  -15.688  22.167  -37.747   4.941   1.123   1.112  H3      NYZ  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NYZ  O      C2      DOUB  N  N   1  
NYZ  C2     N1      SING  N  N   2  
NYZ  C2     N3      SING  N  N   3  
NYZ  N1     C6      DOUB  N  N   4  
NYZ  N3     C4      SING  N  N   5  
NYZ  "O2'"  "C2'"   SING  N  N   6  
NYZ  C6     N6      SING  N  N   7  
NYZ  C6     C5      SING  N  N   8  
NYZ  C4     C5      DOUB  Y  N   9  
NYZ  C4     N9      SING  Y  N  10  
NYZ  "C2'"  "C1'"   SING  N  N  11  
NYZ  "C2'"  "C3'"   SING  N  N  12  
NYZ  C5     N7      SING  Y  N  13  
NYZ  "C1'"  N9      SING  N  N  14  
NYZ  "C1'"  "O4'"   SING  N  N  15  
NYZ  N9     C8      SING  Y  N  16  
NYZ  "O3'"  "C3'"   SING  N  N  17  
NYZ  "C3'"  "C4'"   SING  N  N  18  
NYZ  "O4'"  "C4'"   SING  N  N  19  
NYZ  N7     C8      DOUB  Y  N  20  
NYZ  "C4'"  "C5'"   SING  N  N  21  
NYZ  "C5'"  "O5'"   SING  N  N  22  
NYZ  "O5'"  PA      SING  N  N  23  
NYZ  O2A    PA      DOUB  N  N  24  
NYZ  PA     O1A     SING  N  N  25  
NYZ  PA     C3A     SING  N  N  26  
NYZ  C3A    PB      SING  N  N  27  
NYZ  O1B    PB      DOUB  N  N  28  
NYZ  O2B    PB      SING  N  N  29  
NYZ  PB     O3B     SING  N  N  30  
NYZ  C8     H8      SING  N  N  31  
NYZ  O2B    H1      SING  N  N  32  
NYZ  O3B    H2      SING  N  N  33  
NYZ  O1A    H4      SING  N  N  34  
NYZ  C3A    H3A2    SING  N  N  35  
NYZ  C3A    H3A1    SING  N  N  36  
NYZ  "C5'"  "H5'1"  SING  N  N  37  
NYZ  "C5'"  "H5'2"  SING  N  N  38  
NYZ  "C4'"  "H4'"   SING  N  N  39  
NYZ  "C3'"  "H3'"   SING  N  N  40  
NYZ  "O3'"  "HO3'"  SING  N  N  41  
NYZ  "C2'"  "H2'"   SING  N  N  42  
NYZ  "O2'"  "HO2'"  SING  N  N  43  
NYZ  "C1'"  "H1'"   SING  N  N  44  
NYZ  N6     H61     SING  N  N  45  
NYZ  N6     H62     SING  N  N  46  
NYZ  N3     H3      SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NYZ  InChI             InChI                 1.03   "InChI=1S/C11H17N5O10P2/c12-8-5-9(15-11(19)14-8)16(2-13-5)10-7(18)6(17)4(26-10)1-25-28(23,24)3-27(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1"  
NYZ  InChIKey          InChI                 1.03   ZFKXMQLZXNYUBT-KQYNXXCUSA-N  
NYZ  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)Nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O"  
NYZ  SMILES            CACTVS                3.385  "NC1=NC(=O)Nc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O"  
NYZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)O)O)O)O)NC(=O)N=C2N"  
NYZ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1C3C(C(C(O3)COP(=O)(CP(=O)(O)O)O)O)O)NC(=O)N=C2N"  
#
_pdbx_chem_comp_identifier.comp_id          NYZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NYZ  "Create component"  2020-01-13  EBI   
NYZ  "Initial release"   2020-02-19  RCSB  
##
