data_JHZ
# 
_chem_comp.id                                    JHZ 
_chem_comp.name                                  
"(2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H27 N3 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-08 
_chem_comp.pdbx_modified_date                    2012-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        543.356 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JHZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3NDJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JHZ P    P    P 0 1 N N N 21.966 12.796 -2.682 -0.224 1.935  -0.666 P    JHZ 1  
JHZ C1   C1   C 0 1 N N R 20.703 14.404 1.362  -5.159 -0.375 0.157  C1   JHZ 2  
JHZ O1   O1   O 0 1 N N N 19.671 14.301 0.393  -3.812 0.037  0.400  O1   JHZ 3  
JHZ C2   C2   C 0 1 N N N 20.039 14.939 2.662  -6.025 -0.021 1.369  C2   JHZ 4  
JHZ P2   P2   P 0 1 N N N 19.792 13.105 -0.674 -2.808 0.487  -0.776 P2   JHZ 5  
JHZ C3   C3   C 0 1 N N S 20.013 16.483 2.704  -7.475 -0.435 1.086  C3   JHZ 6  
JHZ N3   N3   N 0 1 N N N 18.746 16.892 3.311  -8.280 -0.291 2.306  N3   JHZ 7  
JHZ C4   C4   C 0 1 N N N 20.146 17.094 1.319  -7.468 -1.885 0.645  C4   JHZ 8  
JHZ O4   O4   O 0 1 N N N 19.524 18.068 0.912  -8.228 -2.688 1.131  O4   JHZ 9  
JHZ C5   C5   C 0 1 N N R 21.156 16.558 0.354  -6.478 -2.292 -0.426 C5   JHZ 10 
JHZ O5   O5   O 0 1 N N N 21.650 15.363 0.958  -5.189 -1.786 -0.064 O5   JHZ 11 
JHZ C6   C6   C 0 1 N N N 22.325 17.493 0.071  -6.904 -1.704 -1.772 C6   JHZ 12 
JHZ C1X  C1X  C 0 1 N N R 24.136 7.429  -3.253 4.994  0.200  1.407  C1X  JHZ 13 
JHZ N11  N11  N 0 1 N N N 25.118 7.461  -4.363 5.758  -0.798 0.655  N11  JHZ 14 
JHZ O1P  O1P  O 0 1 N N N 23.351 13.370 -2.644 -0.649 3.484  -0.551 O1P  JHZ 15 
JHZ C2X  C2X  C 0 1 N N N 24.712 8.089  -2.011 5.742  1.547  1.400  C2X  JHZ 16 
JHZ C21  C21  C 0 1 N N N 25.548 6.307  -4.900 5.945  -0.637 -0.667 C21  JHZ 17 
JHZ O21  O21  O 0 1 N N N 25.140 5.200  -4.524 5.477  0.337  -1.224 O21  JHZ 18 
JHZ O2P  O2P  O 0 1 N N N 21.213 12.918 -3.976 0.062  1.606  -2.080 O2P  JHZ 19 
JHZ C3X  C3X  C 0 1 N N S 23.532 8.802  -1.351 4.738  2.536  0.758  C3X  JHZ 20 
JHZ O3X  O3X  O 0 1 N N N 22.865 7.978  -0.365 4.754  3.792  1.439  O3X  JHZ 21 
JHZ N31  N31  N 0 1 N N N 26.434 6.339  -5.927 6.643  -1.539 -1.382 N31  JHZ 22 
JHZ C3M  C3M  C 0 1 N N N 21.129 17.061 3.615  -8.056 0.442  -0.025 C3M  JHZ 23 
JHZ O3P  O3P  O 0 1 N N N 19.871 11.792 0.052  -2.511 -0.770 -1.738 O3P  JHZ 24 
JHZ C4X  C4X  C 0 1 N N R 22.557 9.060  -2.497 3.386  1.809  0.971  C4X  JHZ 25 
JHZ O4X  O4X  O 0 1 N N N 22.928 8.129  -3.505 3.718  0.417  0.781  O4X  JHZ 26 
JHZ C41  C41  C 0 1 N N N 26.953 7.501  -6.333 7.169  -2.624 -0.779 C41  JHZ 27 
JHZ O41  O41  O 0 1 N N N 27.827 7.448  -7.361 7.801  -3.441 -1.425 O41  JHZ 28 
JHZ O4P  O4P  O 0 1 N N N 18.603 13.207 -1.560 -3.427 1.576  -1.564 O4P  JHZ 29 
JHZ C5X  C5X  C 0 1 N N N 22.600 10.395 -3.206 2.358  2.268  -0.065 C5X  JHZ 30 
JHZ O5X  O5X  O 0 1 N N N 21.966 11.250 -2.268 1.092  1.672  0.224  O5X  JHZ 31 
JHZ C51  C51  C 0 1 N N N 26.541 8.709  -5.824 6.979  -2.806 0.612  C51  JHZ 32 
JHZ C5A  C5A  C 0 1 N N N 27.026 10.049 -6.282 7.556  -4.011 1.310  C5A  JHZ 33 
JHZ C61  C61  C 0 1 N N N 25.573 8.641  -4.815 6.280  -1.883 1.306  C61  JHZ 34 
JHZ OPP  OPP  O 0 1 N N N 21.201 13.401 -1.388 -1.427 1.008  -0.132 OPP  JHZ 35 
JHZ H1   H1   H 0 1 N N N 21.170 13.428 1.561  -5.542 0.138  -0.725 H1   JHZ 36 
JHZ H2   H2   H 0 1 N N N 19.006 14.565 2.713  -5.658 -0.552 2.247  H2   JHZ 37 
JHZ H2A  H2A  H 0 1 N N N 20.606 14.569 3.529  -5.981 1.054  1.546  H2A  JHZ 38 
JHZ HN3  HN3  H 0 1 N N N 18.702 17.890 3.351  -9.238 -0.559 2.140  HN3  JHZ 39 
JHZ HN3A HN3A H 0 0 N N N 17.986 16.547 2.760  -7.882 -0.821 3.066  HN3A JHZ 40 
JHZ H5   H5   H 0 1 N N N 20.655 16.321 -0.596 -6.440 -3.379 -0.495 H5   JHZ 41 
JHZ H6   H6   H 0 1 N N N 23.011 17.017 -0.645 -6.740 -0.626 -1.766 H6   JHZ 42 
JHZ H6A  H6A  H 0 1 N N N 21.947 18.434 -0.355 -6.314 -2.157 -2.569 H6A  JHZ 43 
JHZ H6B  H6B  H 0 1 N N N 22.861 17.704 1.008  -7.961 -1.910 -1.941 H6B  JHZ 44 
JHZ H1X  H1X  H 0 1 N N N 23.910 6.380  -3.012 4.850  -0.138 2.433  H1X  JHZ 45 
JHZ HO1P HO1P H 0 0 N N N 23.561 13.747 -3.490 -0.852 3.770  0.350  HO1P JHZ 46 
JHZ H2X  H2X  H 0 1 N N N 25.134 7.333  -1.333 5.984  1.855  2.417  H2X  JHZ 47 
JHZ H2XA H2XA H 0 0 N N N 25.494 8.812  -2.286 6.647  1.478  0.796  H2XA JHZ 48 
JHZ H3X  H3X  H 0 1 N N N 23.863 9.756  -0.915 4.946  2.668  -0.303 H3X  JHZ 49 
JHZ HO3X HO3X H 0 0 N N N 22.142 8.462  0.016  5.608  4.244  1.411  HO3X JHZ 50 
JHZ HN31 HN31 H 0 0 N N N 26.700 5.489  -6.382 6.768  -1.408 -2.335 HN31 JHZ 51 
JHZ H3M  H3M  H 0 1 N N N 21.072 18.160 3.614  -7.364 0.468  -0.867 H3M  JHZ 52 
JHZ H3MA H3MA H 0 0 N N N 20.995 16.688 4.641  -9.010 0.029  -0.352 H3MA JHZ 53 
JHZ H3MB H3MB H 0 0 N N N 22.112 16.745 3.236  -8.208 1.453  0.353  H3MB JHZ 54 
JHZ HO3P HO3P H 0 0 N N N 19.130 11.250 -0.191 -2.104 -1.523 -1.287 HO3P JHZ 55 
JHZ H4X  H4X  H 0 1 N N N 21.532 8.866  -2.149 3.013  1.980  1.981  H4X  JHZ 56 
JHZ H5X  H5X  H 0 1 N N N 23.636 10.712 -3.399 2.266  3.353  -0.029 H5X  JHZ 57 
JHZ H5XA H5XA H 0 0 N N N 22.044 10.361 -4.155 2.684  1.964  -1.060 H5XA JHZ 58 
JHZ H5A  H5A  H 0 1 N N N 26.527 10.838 -5.700 8.086  -4.631 0.587  H5A  JHZ 59 
JHZ H5AA H5AA H 0 0 N N N 28.114 10.116 -6.133 8.249  -3.684 2.085  H5AA JHZ 60 
JHZ H5AB H5AB H 0 0 N N N 26.793 10.178 -7.349 6.750  -4.589 1.763  H5AB JHZ 61 
JHZ H61  H61  H 0 1 N N N 25.184 9.555  -4.392 6.125  -2.005 2.368  H61  JHZ 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JHZ O2P P    DOUB N N 1  
JHZ P   O1P  SING N N 2  
JHZ P   O5X  SING N N 3  
JHZ P   OPP  SING N N 4  
JHZ O1  C1   SING N N 5  
JHZ O5  C1   SING N N 6  
JHZ C1  C2   SING N N 7  
JHZ C1  H1   SING N N 8  
JHZ P2  O1   SING N N 9  
JHZ C2  C3   SING N N 10 
JHZ C2  H2   SING N N 11 
JHZ C2  H2A  SING N N 12 
JHZ O4P P2   DOUB N N 13 
JHZ OPP P2   SING N N 14 
JHZ P2  O3P  SING N N 15 
JHZ C4  C3   SING N N 16 
JHZ C3  N3   SING N N 17 
JHZ C3  C3M  SING N N 18 
JHZ N3  HN3  SING N N 19 
JHZ N3  HN3A SING N N 20 
JHZ C5  C4   SING N N 21 
JHZ O4  C4   DOUB N N 22 
JHZ C6  C5   SING N N 23 
JHZ C5  O5   SING N N 24 
JHZ C5  H5   SING N N 25 
JHZ C6  H6   SING N N 26 
JHZ C6  H6A  SING N N 27 
JHZ C6  H6B  SING N N 28 
JHZ N11 C1X  SING N N 29 
JHZ O4X C1X  SING N N 30 
JHZ C1X C2X  SING N N 31 
JHZ C1X H1X  SING N N 32 
JHZ C21 N11  SING N N 33 
JHZ C61 N11  SING N N 34 
JHZ O1P HO1P SING N N 35 
JHZ C2X C3X  SING N N 36 
JHZ C2X H2X  SING N N 37 
JHZ C2X H2XA SING N N 38 
JHZ N31 C21  SING N N 39 
JHZ C21 O21  DOUB N N 40 
JHZ C4X C3X  SING N N 41 
JHZ C3X O3X  SING N N 42 
JHZ C3X H3X  SING N N 43 
JHZ O3X HO3X SING N N 44 
JHZ C41 N31  SING N N 45 
JHZ N31 HN31 SING N N 46 
JHZ C3M H3M  SING N N 47 
JHZ C3M H3MA SING N N 48 
JHZ C3M H3MB SING N N 49 
JHZ O3P HO3P SING N N 50 
JHZ O4X C4X  SING N N 51 
JHZ C5X C4X  SING N N 52 
JHZ C4X H4X  SING N N 53 
JHZ O41 C41  DOUB N N 54 
JHZ C41 C51  SING N N 55 
JHZ C5X O5X  SING N N 56 
JHZ C5X H5X  SING N N 57 
JHZ C5X H5XA SING N N 58 
JHZ C5A C51  SING N N 59 
JHZ C51 C61  DOUB N N 60 
JHZ C5A H5A  SING N N 61 
JHZ C5A H5AA SING N N 62 
JHZ C5A H5AB SING N N 63 
JHZ C61 H61  SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JHZ SMILES           ACDLabs              12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(=O)C(N)(C3)C)C)O)O)C" 
JHZ InChI            InChI                1.03  
"InChI=1S/C17H27N3O13P2/c1-8-6-20(16(24)19-15(8)23)12-4-10(21)11(31-12)7-29-34(25,26)33-35(27,28)32-13-5-17(3,18)14(22)9(2)30-13/h6,9-13,21H,4-5,7,18H2,1-3H3,(H,25,26)(H,27,28)(H,19,23,24)/t9-,10+,11-,12-,13-,17+/m1/s1" 
JHZ InChIKey         InChI                1.03  LXNLHPYBLNFMEH-XXXNSVIPSA-N 
JHZ SMILES_CANONICAL CACTVS               3.370 "C[C@H]1O[C@@H](C[C@](C)(N)C1=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O" 
JHZ SMILES           CACTVS               3.370 "C[CH]1O[CH](C[C](C)(N)C1=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O" 
JHZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1C(=O)[C@@](C[C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)(C)N" 
JHZ SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(=O)C(CC(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)(C)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JHZ "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
JHZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,4S,6R)-4-azanyl-4,6-dimethyl-5-oxidanylidene-oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JHZ "Create component"  2010-06-08 RCSB 
JHZ "Modify descriptor" 2011-06-04 RCSB 
JHZ "Modify atom id"    2012-05-16 RCSB 
# 
