data_A1ARZ
# 
_chem_comp.id                                    A1ARZ 
_chem_comp.name                                  "2-methyl-2-{5-[(3-{4-[(1-methylpiperidin-4-yl)amino]-1-(2,2,2-trifluoroethyl)-1H-indol-2-yl}prop-2-yn-1-yl)amino]pyridin-2-yl}propanenitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H31 F3 N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-05-14 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        508.581 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ARZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BR4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ARZ C10 C1  C 0 1 Y N N N N N 124.597 -68.518 43.762 3.284   -0.345 -0.496 C10 A1ARZ 1  
A1ARZ C13 C2  C 0 1 N N N N N N 124.923 -65.429 45.647 -0.304  0.324  -0.214 C13 A1ARZ 2  
A1ARZ C15 C3  C 0 1 N N N N N N 125.436 -63.585 47.471 -2.766  1.251  0.073  C15 A1ARZ 3  
A1ARZ C17 C4  C 0 1 Y N N N N N 123.465 -63.627 49.004 -5.094  0.405  0.001  C17 A1ARZ 4  
A1ARZ C20 C5  C 0 1 Y N N N N N 121.830 -64.939 50.787 -7.749  0.970  0.212  C20 A1ARZ 5  
A1ARZ C22 C6  C 0 1 Y N N N N N 123.788 -64.875 49.557 -5.561  1.686  0.270  C22 A1ARZ 6  
A1ARZ C24 C7  C 0 1 N N N N N N 119.623 -66.046 51.045 -9.376  2.672  0.989  C24 A1ARZ 7  
A1ARZ C26 C8  C 0 1 N N N N N N 120.639 -64.786 52.880 -9.824  1.321  -1.007 C26 A1ARZ 8  
A1ARZ C01 C9  C 0 1 N N N N N N 125.406 -76.306 45.224 10.494  2.847  0.813  C01 A1ARZ 9  
A1ARZ C03 C10 C 0 1 N N N N N N 125.904 -74.177 44.147 8.554   2.883  -0.635 C03 A1ARZ 10 
A1ARZ C04 C11 C 0 1 N N N N N N 125.794 -72.635 44.233 7.035   2.698  -0.668 C04 A1ARZ 11 
A1ARZ C05 C12 C 0 1 N N N N N N 124.320 -72.226 44.312 6.694   1.247  -0.320 C05 A1ARZ 12 
A1ARZ C06 C13 C 0 1 N N N N N N 123.641 -72.926 45.504 7.274   0.911  1.057  C06 A1ARZ 13 
A1ARZ C07 C14 C 0 1 N N N N N N 123.827 -74.451 45.386 8.786   1.147  1.041  C07 A1ARZ 14 
A1ARZ C09 C15 C 0 1 Y N N N N N 124.436 -69.883 43.454 4.678   -0.178 -0.520 C09 A1ARZ 15 
A1ARZ C11 C16 C 0 1 Y N N N N N 124.641 -67.818 45.017 2.162   0.562  -0.269 C11 A1ARZ 16 
A1ARZ C12 C17 C 0 1 Y N N N N N 124.822 -66.513 44.746 1.028   -0.179 -0.369 C12 A1ARZ 17 
A1ARZ C14 C18 C 0 1 N N N N N N 125.047 -64.564 46.448 -1.396  0.735  -0.086 C14 A1ARZ 18 
A1ARZ C18 C19 C 0 1 Y N N N N N 122.260 -63.067 49.389 -6.014  -0.627 -0.166 C18 A1ARZ 19 
A1ARZ C19 C20 C 0 1 Y N N N N N 121.445 -63.722 50.284 -7.363  -0.330 -0.057 C19 A1ARZ 20 
A1ARZ C23 C21 C 0 1 N N N N N N 120.941 -65.688 51.771 -9.215  1.299  0.333  C23 A1ARZ 21 
A1ARZ C25 C22 C 0 1 N N N N N N 121.606 -66.978 52.306 -9.908  0.239  1.191  C25 A1ARZ 22 
A1ARZ C29 C23 C 0 1 N N N N N N 125.105 -65.098 42.670 0.397   -2.581 -0.818 C29 A1ARZ 23 
A1ARZ C30 C24 C 0 1 N N N N N N 126.538 -64.826 42.342 0.115   -3.233 0.537  C30 A1ARZ 24 
A1ARZ C34 C25 C 0 1 Y N N N N N 124.775 -67.569 42.750 2.727   -1.618 -0.719 C34 A1ARZ 25 
A1ARZ C35 C26 C 0 1 Y N N N N N 124.790 -67.918 41.405 3.569   -2.699 -0.967 C35 A1ARZ 26 
A1ARZ C36 C27 C 0 1 Y N N N N N 124.626 -69.245 41.121 4.935   -2.523 -0.981 C36 A1ARZ 27 
A1ARZ C37 C28 C 0 1 Y N N N N N 124.452 -70.230 42.109 5.491   -1.269 -0.771 C37 A1ARZ 28 
A1ARZ F31 F1  F 0 1 N N N N N N 126.681 -63.647 41.718 1.307   -3.740 1.068  F31 A1ARZ 29 
A1ARZ F32 F2  F 0 1 N N N N N N 127.302 -64.833 43.453 -0.417  -2.280 1.412  F32 A1ARZ 30 
A1ARZ F33 F3  F 0 1 N N N N N N 127.042 -65.773 41.526 -0.802  -4.277 0.370  F33 A1ARZ 31 
A1ARZ N02 N1  N 0 1 N N N N N N 125.235 -74.853 45.267 9.060   2.550  0.703  N02 A1ARZ 32 
A1ARZ N08 N2  N 0 1 N N N N N N 124.267 -70.779 44.466 5.240   1.079  -0.293 N08 A1ARZ 33 
A1ARZ N16 N3  N 0 1 N N N N N N 124.277 -62.983 48.106 -3.724  0.158  -0.105 N16 A1ARZ 34 
A1ARZ N21 N4  N 0 1 Y N N N N N 122.993 -65.496 50.425 -6.853  1.925  0.366  N21 A1ARZ 35 
A1ARZ N27 N5  N 0 1 N N N N N N 120.413 -64.067 53.732 -10.295 1.338  -2.041 N27 A1ARZ 36 
A1ARZ N28 N6  N 0 1 Y N N N N N 124.917 -66.344 43.356 1.358   -1.489 -0.644 N28 A1ARZ 37 
A1ARZ H1  H1  H 0 1 N N N N N N 126.040 -64.092 48.238 -2.880  1.676  1.071  H1  A1ARZ 38 
A1ARZ H2  H2  H 0 1 N N N N N N 126.035 -62.793 46.997 -2.952  2.023  -0.673 H2  A1ARZ 39 
A1ARZ H3  H3  H 0 1 N N N N N N 124.715 -65.349 49.268 -4.857  2.495  0.402  H3  A1ARZ 40 
A1ARZ H4  H4  H 0 1 N N N N N N 118.960 -66.589 51.734 -8.883  3.428  0.377  H4  A1ARZ 41 
A1ARZ H5  H5  H 0 1 N N N N N N 119.127 -65.123 50.710 -10.436 2.911  1.076  H5  A1ARZ 42 
A1ARZ H6  H6  H 0 1 N N N N N N 119.845 -66.680 50.174 -8.925  2.656  1.981  H6  A1ARZ 43 
A1ARZ H7  H7  H 0 1 N N N N N N 124.888 -76.762 46.081 10.660  3.909  0.631  H7  A1ARZ 44 
A1ARZ H8  H8  H 0 1 N N N N N N 124.981 -76.698 44.288 10.842  2.591  1.814  H8  A1ARZ 45 
A1ARZ H9  H9  H 0 1 N N N N N N 126.477 -76.551 45.271 11.044  2.262  0.076  H9  A1ARZ 46 
A1ARZ H10 H10 H 0 1 N N N N N N 125.442 -74.512 43.206 9.016   2.226  -1.371 H10 A1ARZ 47 
A1ARZ H11 H11 H 0 1 N N N N N N 126.968 -74.455 44.152 8.800   3.919  -0.868 H11 A1ARZ 48 
A1ARZ H12 H12 H 0 1 N N N N N N 126.320 -72.280 45.131 6.572   3.365  0.059  H12 A1ARZ 49 
A1ARZ H13 H13 H 0 1 N N N N N N 126.251 -72.185 43.339 6.663   2.931  -1.666 H13 A1ARZ 50 
A1ARZ H14 H14 H 0 1 N N N N N N 123.813 -72.527 43.384 7.124   0.582  -1.069 H14 A1ARZ 51 
A1ARZ H15 H15 H 0 1 N N N N N N 124.095 -72.574 46.442 6.814   1.550  1.811  H15 A1ARZ 52 
A1ARZ H16 H16 H 0 1 N N N N N N 122.567 -72.688 45.505 7.070   -0.134 1.292  H16 A1ARZ 53 
A1ARZ H17 H17 H 0 1 N N N N N N 123.286 -74.802 44.494 9.199   0.922  2.024  H17 A1ARZ 54 
A1ARZ H18 H18 H 0 1 N N N N N N 123.402 -74.926 46.283 9.247   0.498  0.296  H18 A1ARZ 55 
A1ARZ H19 H19 H 0 1 N N N N N N 124.546 -68.259 45.998 2.223   1.620  -0.060 H19 A1ARZ 56 
A1ARZ H20 H20 H 0 1 N N N N N N 121.958 -62.112 48.986 -5.684  -1.633 -0.377 H20 A1ARZ 57 
A1ARZ H21 H21 H 0 1 N N N N N N 120.508 -63.280 50.589 -8.105  -1.106 -0.181 H21 A1ARZ 58 
A1ARZ H22 H22 H 0 1 N N N N N N 120.924 -67.478 53.010 -9.456  0.223  2.183  H22 A1ARZ 59 
A1ARZ H23 H23 H 0 1 N N N N N N 121.825 -67.653 51.466 -10.967 0.478  1.278  H23 A1ARZ 60 
A1ARZ H24 H24 H 0 1 N N N N N N 122.542 -66.720 52.823 -9.792  -0.739 0.724  H24 A1ARZ 61 
A1ARZ H25 H25 H 0 1 N N N N N N 124.731 -64.285 43.310 0.812   -3.324 -1.500 H25 A1ARZ 62 
A1ARZ H26 H26 H 0 1 N N N N N N 124.529 -65.122 41.733 -0.531  -2.186 -1.231 H26 A1ARZ 63 
A1ARZ H27 H27 H 0 1 N N N N N N 124.924 -67.181 40.627 3.149   -3.678 -1.148 H27 A1ARZ 64 
A1ARZ H28 H28 H 0 1 N N N N N N 124.630 -69.552 40.086 5.580   -3.367 -1.174 H28 A1ARZ 65 
A1ARZ H29 H29 H 0 1 N N N N N N 124.330 -71.264 41.820 6.564   -1.148 -0.785 H29 A1ARZ 66 
A1ARZ H31 H31 H 0 1 N N N N N N 124.970 -70.556 45.141 4.666   1.841  -0.118 H31 A1ARZ 67 
A1ARZ H32 H32 H 0 1 N N N N N N 124.621 -62.175 48.585 -3.406  -0.739 -0.297 H32 A1ARZ 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ARZ C36 C35 DOUB Y N 1  
A1ARZ C36 C37 SING Y N 2  
A1ARZ C35 C34 SING Y N 3  
A1ARZ F33 C30 SING N N 4  
A1ARZ F31 C30 SING N N 5  
A1ARZ C37 C09 DOUB Y N 6  
A1ARZ C30 C29 SING N N 7  
A1ARZ C30 F32 SING N N 8  
A1ARZ C29 N28 SING N N 9  
A1ARZ C34 N28 SING Y N 10 
A1ARZ C34 C10 DOUB Y N 11 
A1ARZ N28 C12 SING Y N 12 
A1ARZ C09 C10 SING Y N 13 
A1ARZ C09 N08 SING N N 14 
A1ARZ C10 C11 SING Y N 15 
A1ARZ C03 C04 SING N N 16 
A1ARZ C03 N02 SING N N 17 
A1ARZ C04 C05 SING N N 18 
A1ARZ C05 N08 SING N N 19 
A1ARZ C05 C06 SING N N 20 
A1ARZ C12 C11 DOUB Y N 21 
A1ARZ C12 C13 SING N N 22 
A1ARZ C01 N02 SING N N 23 
A1ARZ N02 C07 SING N N 24 
A1ARZ C07 C06 SING N N 25 
A1ARZ C13 C14 TRIP N N 26 
A1ARZ C14 C15 SING N N 27 
A1ARZ C15 N16 SING N N 28 
A1ARZ N16 C17 SING N N 29 
A1ARZ C17 C18 DOUB Y N 30 
A1ARZ C17 C22 SING Y N 31 
A1ARZ C18 C19 SING Y N 32 
A1ARZ C22 N21 DOUB Y N 33 
A1ARZ C19 C20 DOUB Y N 34 
A1ARZ N21 C20 SING Y N 35 
A1ARZ C20 C23 SING N N 36 
A1ARZ C24 C23 SING N N 37 
A1ARZ C23 C25 SING N N 38 
A1ARZ C23 C26 SING N N 39 
A1ARZ C26 N27 TRIP N N 40 
A1ARZ C15 H1  SING N N 41 
A1ARZ C15 H2  SING N N 42 
A1ARZ C22 H3  SING N N 43 
A1ARZ C24 H4  SING N N 44 
A1ARZ C24 H5  SING N N 45 
A1ARZ C24 H6  SING N N 46 
A1ARZ C01 H7  SING N N 47 
A1ARZ C01 H8  SING N N 48 
A1ARZ C01 H9  SING N N 49 
A1ARZ C03 H10 SING N N 50 
A1ARZ C03 H11 SING N N 51 
A1ARZ C04 H12 SING N N 52 
A1ARZ C04 H13 SING N N 53 
A1ARZ C05 H14 SING N N 54 
A1ARZ C06 H15 SING N N 55 
A1ARZ C06 H16 SING N N 56 
A1ARZ C07 H17 SING N N 57 
A1ARZ C07 H18 SING N N 58 
A1ARZ C11 H19 SING N N 59 
A1ARZ C18 H20 SING N N 60 
A1ARZ C19 H21 SING N N 61 
A1ARZ C25 H22 SING N N 62 
A1ARZ C25 H23 SING N N 63 
A1ARZ C25 H24 SING N N 64 
A1ARZ C29 H25 SING N N 65 
A1ARZ C29 H26 SING N N 66 
A1ARZ C35 H27 SING N N 67 
A1ARZ C36 H28 SING N N 68 
A1ARZ C37 H29 SING N N 69 
A1ARZ N08 H31 SING N N 70 
A1ARZ N16 H32 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ARZ SMILES           ACDLabs              12.01 "CN1CCC(Nc2cccc3n(CC(F)(F)F)c(C#CCNc4ccc(nc4)C(C)(C)C#N)cc23)CC1"                                                                                                                 
A1ARZ InChI            InChI                1.06  "InChI=1S/C28H31F3N6/c1-27(2,18-32)26-10-9-21(17-34-26)33-13-5-6-22-16-23-24(35-20-11-14-36(3)15-12-20)7-4-8-25(23)37(22)19-28(29,30)31/h4,7-10,16-17,20,33,35H,11-15,19H2,1-3H3" 
A1ARZ InChIKey         InChI                1.06  ZEIVMOHWKJFVMK-UHFFFAOYSA-N                                                                                                                                                       
A1ARZ SMILES_CANONICAL CACTVS               3.385 "CN1CCC(CC1)Nc2cccc3n(CC(F)(F)F)c(cc23)C#CCNc4ccc(nc4)C(C)(C)C#N"                                                                                                                 
A1ARZ SMILES           CACTVS               3.385 "CN1CCC(CC1)Nc2cccc3n(CC(F)(F)F)c(cc23)C#CCNc4ccc(nc4)C(C)(C)C#N"                                                                                                                 
A1ARZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C#N)c1ccc(cn1)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)NC4CCN(CC4)C"                                                                                                                   
A1ARZ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C#N)c1ccc(cn1)NCC#Cc2cc3c(cccc3n2CC(F)(F)F)NC4CCN(CC4)C"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ARZ "SYSTEMATIC NAME" ACDLabs              12.01 "2-methyl-2-{5-[(3-{4-[(1-methylpiperidin-4-yl)amino]-1-(2,2,2-trifluoroethyl)-1H-indol-2-yl}prop-2-yn-1-yl)amino]pyridin-2-yl}propanenitrile" 
A1ARZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-methyl-2-[5-[3-[4-[(1-methylpiperidin-4-yl)amino]-1-[2,2,2-tris(fluoranyl)ethyl]indol-2-yl]prop-2-ynylamino]pyridin-2-yl]propanenitrile"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ARZ "Create component" 2024-05-14 RCSB 
A1ARZ "Initial release"  2024-12-18 RCSB 
# 
