data_ZCY
# 
_chem_comp.id                                    ZCY 
_chem_comp.name                                  "(S)-1'-(2',3'-DIHYDROXYPROPYL)-CYTOSINE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ? 
_chem_comp.formula                               "C7 H12 N3 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-03-28 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.160 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     ZCY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2JJA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZCY O2   O2   O 0 1 N N N 1.310 3.138  24.014 2.410  -1.969 -0.520 O2   ZCY 1  
ZCY C2   C2   C 0 1 N N N 2.291 3.920  24.080 2.928  -0.882 -0.320 C2   ZCY 2  
ZCY N3   N3   N 0 1 N N N 2.077 5.220  24.326 4.158  -0.826 0.188  N3   ZCY 3  
ZCY C4   C4   C 0 1 N N N 3.129 6.042  24.423 4.744  0.342  0.415  C4   ZCY 4  
ZCY N4   N4   N 0 1 N N N 2.910 7.342  24.667 6.015  0.388  0.940  N4   ZCY 5  
ZCY C5   C5   C 0 1 N N N 4.443 5.569  24.303 4.058  1.536  0.114  C5   ZCY 6  
ZCY C6   C6   C 0 1 N N N 4.637 4.233  24.041 2.808  1.463  -0.402 C6   ZCY 7  
ZCY N1   N1   N 0 1 N N N 3.563 3.446  23.930 2.249  0.240  -0.623 N1   ZCY 8  
ZCY C1G  C1G  C 0 1 N N N 3.748 2.027  23.591 0.900  0.146  -1.186 C1G  ZCY 9  
ZCY C2G  C2G  C 0 1 N N S 3.624 1.101  24.765 -0.127 0.134  -0.052 C2G  ZCY 10 
ZCY O2G  O2G  O 0 1 N N N 4.690 1.372  25.675 0.114  -0.989 0.798  O2G  ZCY 11 
ZCY C3G  C3G  C 0 1 N N N 3.710 -0.337 24.308 -1.536 0.036  -0.640 C3G  ZCY 12 
ZCY O3G  O3G  O 0 1 N N N 4.825 -0.523 23.436 -2.499 0.143  0.410  O3G  ZCY 13 
ZCY P    P    P 0 1 N N N 5.780 -1.807 23.561 -4.087 0.081  0.153  P    ZCY 14 
ZCY O2P  O2P  O 0 1 N N N 4.967 -3.003 23.975 -4.538 1.353  -0.725 O2P  ZCY 15 
ZCY O1P  O1P  O 0 1 N N N 7.024 -1.478 24.337 -4.421 -1.164 -0.575 O1P  ZCY 16 
ZCY OXT  OXT  O 0 1 N Y N ?     ?      ?      -4.860 0.101  1.564  OXT  ZCY 17 
ZCY H4N1 H4N1 H 0 0 N N N 3.779 7.835  24.714 6.484  -0.436 1.146  H4N1 ZCY 18 
ZCY H4N2 H4N2 H 0 0 N N N 2.009 7.758  24.785 6.441  1.243  1.105  H4N2 ZCY 19 
ZCY H5   H5   H 0 1 N N N 5.283 6.238  24.414 4.521  2.495  0.293  H5   ZCY 20 
ZCY H6   H6   H 0 1 N N N 5.633 3.830  23.928 2.262  2.363  -0.641 H6   ZCY 21 
ZCY H1G1 H1G1 H 0 0 N N N 2.978 1.749  22.856 0.717  1.003  -1.834 H1G1 ZCY 22 
ZCY H1G2 H1G2 H 0 0 N N N 4.772 1.919  23.203 0.812  -0.773 -1.765 H1G2 ZCY 23 
ZCY H2G  H2G  H 0 1 N N N 5.508 1.432  25.196 0.052  -1.843 0.348  H2G  ZCY 24 
ZCY H3G1 H3G1 H 0 0 N N N 3.829 -0.987 25.187 -1.687 0.844  -1.356 H3G1 ZCY 25 
ZCY H3G2 H3G2 H 0 0 N N N 2.788 -0.592 23.764 -1.653 -0.923 -1.145 H3G2 ZCY 26 
ZCY H2P  H2P  H 0 1 N N N 4.796 -3.548 23.216 -4.350 2.205  -0.309 H2P  ZCY 27 
ZCY H2   H2   H 0 1 N N N 2.652 1.259  25.256 -0.038 1.053  0.528  H2   ZCY 28 
ZCY HXT  HXT  H 0 1 N N N ?     ?      ?      -5.824 0.066  1.486  HXT  ZCY 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZCY O2  C2   DOUB N N 1  
ZCY C2  N3   SING N N 2  
ZCY C2  N1   SING N N 3  
ZCY N3  C4   DOUB N N 4  
ZCY C4  N4   SING N N 5  
ZCY C4  C5   SING N N 6  
ZCY C5  C6   DOUB N N 7  
ZCY C6  N1   SING N N 8  
ZCY N1  C1G  SING N N 9  
ZCY C1G C2G  SING N N 10 
ZCY C2G O2G  SING N N 11 
ZCY C2G C3G  SING N N 12 
ZCY O2G H2G  SING N N 13 
ZCY C3G O3G  SING N N 14 
ZCY O3G P    SING N N 15 
ZCY P   O2P  SING N N 16 
ZCY P   O1P  DOUB N N 17 
ZCY N4  H4N1 SING N N 18 
ZCY N4  H4N2 SING N N 19 
ZCY C5  H5   SING N N 20 
ZCY C6  H6   SING N N 21 
ZCY C1G H1G1 SING N N 22 
ZCY C1G H1G2 SING N N 23 
ZCY C2G H2   SING N N 24 
ZCY C3G H3G1 SING N N 25 
ZCY C3G H3G2 SING N N 26 
ZCY O2P H2P  SING N N 27 
ZCY P   OXT  SING N N 28 
ZCY OXT HXT  SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZCY SMILES           ACDLabs              10.04 "O=C1N=C(C=CN1CC(O)COP(=O)(O)O)N"                                                                                      
ZCY SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C[C@H](O)CO[P](O)(O)=O)C=C1"                                                                              
ZCY SMILES           CACTVS               3.341 "NC1=NC(=O)N(C[CH](O)CO[P](O)(O)=O)C=C1"                                                                               
ZCY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C[C@@H](COP(=O)(O)O)O"                                                                               
ZCY SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)CC(COP(=O)(O)O)O"                                                                                    
ZCY InChI            InChI                1.03  "InChI=1S/C7H12N3O6P/c8-6-1-2-10(7(12)9-6)3-5(11)4-16-17(13,14)15/h1-2,5,11H,3-4H2,(H2,8,9,12)(H2,13,14,15)/t5-/m0/s1" 
ZCY InChIKey         InChI                1.03  IQHBYFSDRWZBDG-YFKPBYRVSA-N                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZCY "SYSTEMATIC NAME" ACDLabs              10.04 "(2S)-3-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxypropyl dihydrogen phosphate" 
ZCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-3-(4-amino-2-oxo-pyrimidin-1-yl)-2-hydroxy-propyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZCY "Create component"  2008-03-28 EBI  
ZCY "Modify descriptor" 2011-06-04 RCSB 
# 
