data_YYY
# 
_chem_comp.id                                    YYY 
_chem_comp.name                                  "DEOXYCYTIDINE DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H15 N3 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-08-31 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        387.177 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YYY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YYY O3B    O3B  O 0 1 N N N 11.481 -10.070 20.745 -5.458 -4.404 1.723  O3B    YYY 1  
YYY PB     PB   P 0 1 N N N 11.937 -9.818  22.248 -5.113 -3.093 0.842  PB     YYY 2  
YYY O1B    O1B  O 0 1 N N N 11.230 -10.919 23.134 -6.284 -2.211 0.523  O1B    YYY 3  
YYY O2B    O2B  O 0 1 N N N 13.541 -9.886  22.367 -4.331 -3.694 -0.439 O2B    YYY 4  
YYY O3A    O3A  O 0 1 N N N 11.583 -8.275  22.662 -3.941 -2.377 1.693  O3A    YYY 5  
YYY PA     PA   P 0 1 N N R 10.610 -7.760  23.860 -3.962 -1.686 3.155  PA     YYY 6  
YYY O1A    O1A  O 0 1 N N N 10.401 -8.937  24.900 -4.360 -2.613 4.267  O1A    YYY 7  
YYY O2A    O2A  O 0 1 N N N 9.197  -7.212  23.342 -4.951 -0.422 2.953  O2A    YYY 8  
YYY "O5'"  O5*  O 0 1 N N N 11.471 -6.586  24.510 -2.493 -1.028 3.315  "O5'"  YYY 9  
YYY "C5'"  C5*  C 0 1 N N N 12.633 -6.974  25.199 -2.005 -0.136 2.327  "C5'"  YYY 10 
YYY "C4'"  C4*  C 0 1 N N R 13.523 -5.772  25.463 -0.611 0.328  2.728  "C4'"  YYY 11 
YYY "O4'"  O4*  O 0 1 N N N 13.892 -5.032  24.291 0.247  -0.829 2.764  "O4'"  YYY 12 
YYY "C3'"  C3*  C 0 1 N N S 12.970 -4.801  26.511 0.008  1.286  1.720  "C3'"  YYY 13 
YYY "O3'"  O3*  O 0 1 N N N 13.557 -4.958  27.785 0.965  2.121  2.368  "O3'"  YYY 14 
YYY "C2'"  C2*  C 0 1 N N N 13.218 -3.427  25.942 0.710  0.360  0.754  "C2'"  YYY 15 
YYY "C1'"  C1*  C 0 1 N N R 13.775 -3.628  24.532 1.157  -0.778 1.657  "C1'"  YYY 16 
YYY N1     N1   N 0 1 N N N 12.886 -2.894  23.608 1.164  -2.047 0.989  N1     YYY 17 
YYY C2     C2   C 0 1 N N N 13.417 -2.005  22.642 2.328  -2.561 0.367  C2     YYY 18 
YYY O2     O2   O 0 1 N N N 14.663 -1.861  22.530 3.386  -1.929 0.379  O2     YYY 19 
YYY N3     N3   N 0 1 N N N 12.558 -1.321  21.833 2.260  -3.794 -0.259 N3     YYY 20 
YYY C4     C4   C 0 1 N N N 11.209 -1.456  21.929 1.147  -4.479 -0.282 C4     YYY 21 
YYY N4     N4   N 0 1 N N N 10.373 -0.770  21.115 1.101  -5.702 -0.910 N4     YYY 22 
YYY C5     C5   C 0 1 N N N 10.683 -2.319  22.878 -0.094 -3.972 0.359  C5     YYY 23 
YYY C6     C6   C 0 1 N N N 11.544 -3.021  23.712 -0.008 -2.785 0.956  C6     YYY 24 
YYY "H5'1" 1H5* H 0 0 N N N 13.180 -7.785  24.664 -1.971 -0.654 1.366  "H5'1" YYY 25 
YYY "H5'2" 2H5* H 0 0 N N N 12.393 -7.526  26.138 -2.683 0.718  2.254  "H5'2" YYY 26 
YYY "H4'"  H4*  H 0 1 N N N 14.472 -6.176  25.886 -0.644 0.753  3.736  "H4'"  YYY 27 
YYY "H3'"  H3*  H 0 1 N N N 11.870 -4.959  26.601 -0.722 1.941  1.236  "H3'"  YYY 28 
YYY "H1'"  H1*  H 0 1 N N N 14.792 -3.173  24.483 2.163  -0.604 2.054  "H1'"  YYY 29 
YYY HA     HA   H 0 1 N N N 13.214 -4.356  28.435 0.743  3.042  2.146  HA     YYY 30 
YYY "H2'1" 1H2* H 0 0 N N N 13.872 -2.795  26.587 -0.003 -0.001 0.003  "H2'1" YYY 31 
YYY "H2'2" 2H2* H 0 0 N N N 12.317 -2.770  25.970 1.556  0.818  0.232  "H2'2" YYY 32 
YYY H6     H6   H 0 1 N N N 11.124 -3.697  24.476 -0.867 -2.341 1.449  H6     YYY 33 
YYY H4N1   1H4N H 0 0 N N N 9.361  -0.871  21.187 0.349  -6.310 -0.691 H4N1   YYY 34 
YYY H4N2   2H4N H 0 0 N N N 10.760 -0.135  20.417 1.822  -5.923 -1.553 H4N2   YYY 35 
YYY H5     H5   H 0 1 N N N 9.591  -2.447  22.970 -1.005 -4.554 0.330  H5     YYY 36 
YYY H3B    H3B  H 0 1 N N N 10.533 -10.120 20.705 -6.213 -4.970 1.456  H3B    YYY 37 
YYY H2B    H2B  H 0 1 N N N 13.923 -9.899  21.497 -4.849 -4.118 -1.155 H2B    YYY 38 
YYY H2A    H2A  H 0 1 N N N 8.609  -7.103  24.080 -5.240 0.085  3.742  H2A    YYY 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YYY O3B   H3B    SING N N 1  
YYY O3B   PB     SING N N 2  
YYY PB    O1B    DOUB N N 3  
YYY PB    O2B    SING N N 4  
YYY PB    O3A    SING N N 5  
YYY O2B   H2B    SING N N 6  
YYY O3A   PA     SING N N 7  
YYY PA    O1A    DOUB N N 8  
YYY PA    O2A    SING N N 9  
YYY PA    "O5'"  SING N N 10 
YYY O2A   H2A    SING N N 11 
YYY "O5'" "C5'"  SING N N 12 
YYY "C5'" "C4'"  SING N N 13 
YYY "C5'" "H5'1" SING N N 14 
YYY "C5'" "H5'2" SING N N 15 
YYY "C4'" "O4'"  SING N N 16 
YYY "C4'" "C3'"  SING N N 17 
YYY "C4'" "H4'"  SING N N 18 
YYY "O4'" "C1'"  SING N N 19 
YYY "C3'" "O3'"  SING N N 20 
YYY "C3'" "C2'"  SING N N 21 
YYY "C3'" "H3'"  SING N N 22 
YYY "O3'" HA     SING N N 23 
YYY "C2'" "C1'"  SING N N 24 
YYY "C2'" "H2'1" SING N N 25 
YYY "C2'" "H2'2" SING N N 26 
YYY "C1'" N1     SING N N 27 
YYY "C1'" "H1'"  SING N N 28 
YYY N1    C2     SING N N 29 
YYY N1    C6     SING N N 30 
YYY C2    O2     DOUB N N 31 
YYY C2    N3     SING N N 32 
YYY N3    C4     DOUB N N 33 
YYY C4    N4     SING N N 34 
YYY C4    C5     SING N N 35 
YYY N4    H4N1   SING N N 36 
YYY N4    H4N2   SING N N 37 
YYY C5    C6     DOUB N N 38 
YYY C5    H5     SING N N 39 
YYY C6    H6     SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YYY SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O"                                                                                                                    
YYY SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P@](O)(=O)O[P](O)(O)=O)O2"                                                                                                
YYY SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                     
YYY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO[P@@](=O)(O)OP(=O)(O)O)O"                                                                                                   
YYY SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)O)O"                                                                                                                    
YYY InChI            InChI                1.03  "InChI=1S/C9H15N3O10P2/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(21-8)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" 
YYY InChIKey         InChI                1.03  FTDHDKPUHBLBTL-SHYZEUOFSA-N                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YYY "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxycytidine 5'-(trihydrogen diphosphate)
;
YYY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YYY "Create component"  2006-08-31 EBI  
YYY "Modify descriptor" 2011-06-04 RCSB 
# 
