data_YKY
# 
_chem_comp.id                                    YKY 
_chem_comp.name                                  "(1R,2S)-2-((S)-2-((((2-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H28 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YKY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M02 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YKY C24 C1  C 0 1 Y N N N N N 11.495 27.598 24.645 6.415  0.300  0.136  C24 YKY 1  
YKY C28 C2  C 0 1 Y N N N N N 11.452 30.475 24.750 8.736  0.061  1.622  C28 YKY 2  
YKY C04 C3  C 0 1 N N S N N N 12.180 22.104 27.017 0.413  -0.425 -0.450 C04 YKY 3  
YKY C05 C4  C 0 1 N N N N N N 13.299 21.816 28.045 0.231  -1.785 -1.127 C05 YKY 4  
YKY C06 C5  C 0 1 N N N N N N 14.706 22.273 27.636 -1.013 -1.749 -2.018 C06 YKY 5  
YKY C07 C6  C 0 1 N N N N N N 15.223 21.448 26.445 -0.782 -0.776 -3.176 C07 YKY 6  
YKY C08 C7  C 0 1 N N N N N N 15.723 22.244 28.830 -1.283 -3.149 -2.574 C08 YKY 7  
YKY C09 C8  C 0 1 N N N N N N 10.793 21.535 27.525 -0.679 -0.221 0.568  C09 YKY 8  
YKY C12 C9  C 0 1 N N N N N N 7.949  19.657 26.435 -4.110 1.100  0.463  C12 YKY 9  
YKY C14 C10 C 0 1 N N N N N N 6.663  20.963 24.534 -4.645 3.192  -0.810 C14 YKY 10 
YKY C16 C11 C 0 1 N N N N N N 5.631  22.448 26.048 -4.226 4.555  0.895  C16 YKY 11 
YKY C19 C12 C 0 1 N N R N N N 9.253  18.359 28.208 -3.538 -0.967 1.743  C19 YKY 12 
YKY C25 C13 C 0 1 Y N N N N N 10.638 28.368 23.838 7.628  0.685  -0.408 C25 YKY 13 
YKY C29 C14 C 0 1 Y N N N N N 12.322 29.751 25.572 7.524  -0.322 2.165  C29 YKY 14 
YKY C30 C15 C 0 1 Y N N N N N 12.338 28.344 25.515 6.364  -0.203 1.422  C30 YKY 15 
YKY O21 O1  O 0 1 N N N N N N 10.152 22.275 28.269 -0.418 -0.260 1.752  O21 YKY 16 
YKY C02 C16 C 0 1 N N N N N N 10.990 24.005 25.836 2.807  0.031  -0.461 C02 YKY 17 
YKY C11 C17 C 0 1 N N S N N N 8.989  19.727 27.624 -2.981 0.327  1.147  C11 YKY 18 
YKY C13 C18 C 0 1 N N R N N N 7.636  20.991 25.724 -3.577 2.445  -0.038 C13 YKY 19 
YKY C17 C19 C 0 1 N N N N N N 6.906  21.889 26.745 -3.288 3.393  1.146  C17 YKY 20 
YKY C23 C20 C 0 1 N N N N N N 11.519 26.034 24.587 5.149  0.436  -0.670 C23 YKY 21 
YKY C27 C21 C 0 1 Y N N N N N 10.607 29.786 23.878 8.789  0.565  0.336  C27 YKY 22 
YKY F26 F1  F 0 1 N N N N N N 9.819  27.738 22.988 7.679  1.176  -1.666 F26 YKY 23 
YKY N03 N1  N 0 1 N N N N N N 12.002 23.535 26.687 1.717  -0.382 0.216  N03 YKY 24 
YKY N10 N2  N 0 1 N N N N N N 10.287 20.299 27.166 -1.944 0.005  0.164  N10 YKY 25 
YKY N15 N3  N 0 1 N N N N N N 5.559  21.786 24.725 -4.906 4.345  -0.177 N15 YKY 26 
YKY O01 O2  O 0 1 N N N N N N 10.251 23.245 25.234 2.693  0.452  -1.595 O01 YKY 27 
YKY O18 O3  O 0 1 N N N N N N 6.854  20.303 23.524 -5.174 2.813  -1.834 O18 YKY 28 
YKY O20 O4  O 0 1 N N N N N N 10.127 18.533 29.315 -2.511 -1.632 2.481  O20 YKY 29 
YKY O22 O5  O 0 1 N N N N N N 10.813 25.371 25.649 4.021  -0.025 0.118  O22 YKY 30 
YKY H1  H1  H 0 1 N N N N N N 11.434 31.554 24.789 9.642  -0.032 2.203  H1  YKY 31 
YKY H2  H2  H 0 1 N N N N N N 12.432 21.564 26.092 0.362  0.364  -1.201 H2  YKY 32 
YKY H3  H3  H 0 1 N N N N N N 13.036 22.326 28.983 1.107  -2.008 -1.736 H3  YKY 33 
YKY H4  H4  H 0 1 N N N N N N 13.332 20.730 28.215 0.111  -2.556 -0.367 H4  YKY 34 
YKY H5  H5  H 0 1 N N N N N N 14.629 23.319 27.303 -1.870 -1.419 -1.432 H5  YKY 35 
YKY H6  H6  H 0 1 N N N N N N 16.231 21.792 26.170 -1.691 -0.700 -3.773 H6  YKY 36 
YKY H7  H7  H 0 1 N N N N N N 15.263 20.385 26.725 -0.525 0.206  -2.780 H7  YKY 37 
YKY H8  H8  H 0 1 N N N N N N 14.545 21.576 25.588 0.033  -1.141 -3.801 H8  YKY 38 
YKY H9  H9  H 0 1 N N N N N N 15.327 22.841 29.665 -1.446 -3.842 -1.749 H9  YKY 39 
YKY H10 H10 H 0 1 N N N N N N 15.871 21.205 29.160 -2.168 -3.123 -3.208 H10 YKY 40 
YKY H11 H11 H 0 1 N N N N N N 16.685 22.665 28.502 -0.425 -3.479 -3.160 H11 YKY 41 
YKY H12 H12 H 0 1 N N N N N N 7.005  19.262 26.838 -4.487 0.522  -0.381 H12 YKY 42 
YKY H13 H13 H 0 1 N N N N N N 8.346  18.961 25.682 -4.917 1.272  1.175  H13 YKY 43 
YKY H14 H14 H 0 1 N N N N N N 4.938  23.173 26.449 -4.311 5.429  1.523  H14 YKY 44 
YKY S1  S1  S 0 1 N Y N N N N 9.695  17.715 27.476 -4.119 -2.048 0.407  S1  YKY 45 
YKY H16 H16 H 0 1 N N N N N N 8.291  17.993 28.597 -4.370 -0.732 2.408  H16 YKY 46 
YKY H17 H17 H 0 1 N N N N N N 12.982 30.271 26.251 7.483  -0.716 3.170  H17 YKY 47 
YKY H18 H18 H 0 1 N N N N N N 13.019 27.808 26.159 5.418  -0.503 1.848  H18 YKY 48 
YKY H19 H19 H 0 1 N N N N N N 8.567  20.373 28.408 -2.552 0.938  1.941  H19 YKY 49 
YKY H20 H20 H 0 1 N N N N N N 8.577  21.473 25.419 -2.686 2.302  -0.649 H20 YKY 50 
YKY H21 H21 H 0 1 N N N N N N 6.623  21.299 27.629 -2.250 3.726  1.128  H21 YKY 51 
YKY H22 H22 H 0 1 N N N N N N 7.561  22.718 27.052 -3.521 2.908  2.094  H22 YKY 52 
YKY H23 H23 H 0 1 N N N N N N 11.069 25.722 23.633 5.001  1.482  -0.941 H23 YKY 53 
YKY H24 H24 H 0 1 N N N N N N 12.569 25.708 24.621 5.229  -0.165 -1.576 H24 YKY 54 
YKY H25 H25 H 0 1 N N N N N N 9.931  30.331 23.235 9.736  0.865  -0.088 H25 YKY 55 
YKY H26 H26 H 0 1 N N N N N N 12.633 24.199 27.089 1.796  -0.650 1.145  H26 YKY 56 
YKY H27 H27 H 0 1 N N N N N N 10.839 19.741 26.546 -2.169 -0.046 -0.779 H27 YKY 57 
YKY H28 H28 H 0 1 N N N N N N 10.314 17.688 29.707 -1.738 -1.872 1.952  H28 YKY 58 
YKY O1  O6  O 0 1 N Y N N N N ?      ?      ?      -5.267 -1.493 -0.220 O1  YKY 59 
YKY O2  O7  O 0 1 N Y N N N N ?      ?      ?      -3.023 -2.524 -0.361 O2  YKY 60 
YKY O3  O8  O 0 1 N Y N N N N ?      ?      ?      -4.643 -3.286 1.121  O3  YKY 61 
YKY H15 H15 H 0 1 N Y N N N N ?      ?      ?      -4.992 -3.964 0.527  H15 YKY 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YKY F26 C25 SING N N 1  
YKY O18 C14 DOUB N N 2  
YKY C25 C27 DOUB Y N 3  
YKY C25 C24 SING Y N 4  
YKY C27 C28 SING Y N 5  
YKY C14 N15 SING N N 6  
YKY C14 C13 SING N N 7  
YKY C23 C24 SING N N 8  
YKY C23 O22 SING N N 9  
YKY C24 C30 DOUB Y N 10 
YKY N15 C16 DOUB N N 11 
YKY C28 C29 DOUB Y N 12 
YKY O01 C02 DOUB N N 13 
YKY C30 C29 SING Y N 14 
YKY O22 C02 SING N N 15 
YKY C13 C12 SING N N 16 
YKY C13 C17 SING N N 17 
YKY C02 N03 SING N N 18 
YKY C16 C17 SING N N 19 
YKY C12 C11 SING N N 20 
YKY C07 C06 SING N N 21 
YKY N03 C04 SING N N 22 
YKY C04 C09 SING N N 23 
YKY C04 C05 SING N N 24 
YKY N10 C09 SING N N 25 
YKY N10 C11 SING N N 26 
YKY C09 O21 DOUB N N 27 
YKY C11 C19 SING N N 28 
YKY C06 C05 SING N N 29 
YKY C06 C08 SING N N 30 
YKY C19 O20 SING N N 31 
YKY C28 H1  SING N N 32 
YKY C04 H2  SING N N 33 
YKY C05 H3  SING N N 34 
YKY C05 H4  SING N N 35 
YKY C06 H5  SING N N 36 
YKY C07 H6  SING N N 37 
YKY C07 H7  SING N N 38 
YKY C07 H8  SING N N 39 
YKY C08 H9  SING N N 40 
YKY C08 H10 SING N N 41 
YKY C08 H11 SING N N 42 
YKY C12 H12 SING N N 43 
YKY C12 H13 SING N N 44 
YKY C16 H14 SING N N 45 
YKY C19 S1  SING N N 46 
YKY C19 H16 SING N N 47 
YKY C29 H17 SING N N 48 
YKY C30 H18 SING N N 49 
YKY C11 H19 SING N N 50 
YKY C13 H20 SING N N 51 
YKY C17 H21 SING N N 52 
YKY C17 H22 SING N N 53 
YKY C23 H23 SING N N 54 
YKY C23 H24 SING N N 55 
YKY C27 H25 SING N N 56 
YKY N03 H26 SING N N 57 
YKY N10 H27 SING N N 58 
YKY O20 H28 SING N N 59 
YKY S1  O1  DOUB N N 60 
YKY S1  O2  DOUB N N 61 
YKY S1  O3  SING N N 62 
YKY O3  H15 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YKY SMILES           ACDLabs              12.01 "O=C1N=CCC1CC(NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1F)C(O)S(=O)(=O)O"                                                                                                                                                             
YKY InChI            InChI                1.03  "InChI=1S/C21H28FN3O8S/c1-12(2)9-16(25-21(29)33-11-14-5-3-4-6-15(14)22)19(27)24-17(20(28)34(30,31)32)10-13-7-8-23-18(13)26/h3-6,8,12-13,16-17,20,28H,7,9-11H2,1-2H3,(H,24,27)(H,25,29)(H,30,31,32)/t13-,16-,17-,20+/m0/s1" 
YKY InChIKey         InChI                1.03  VAWJCTITNJHIPN-VZYKRBATSA-N                                                                                                                                                                                                
YKY SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1F)C(=O)N[C@@H](C[C@@H]2CC=NC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                         
YKY SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1F)C(=O)N[CH](C[CH]2CC=NC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                               
YKY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F"                                                                                                                                              
YKY SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2F"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YKY "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-[(N-{[(2-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propane-1-sulfonic acid"                                
YKY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(2-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YKY "Create component" 2021-03-12 RCSB 
YKY "Initial release"  2021-03-24 RCSB 
YKY "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YKY 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
