data_Y2Y
# 
_chem_comp.id                                    Y2Y 
_chem_comp.name                                  "(3S,4R)-3-amino-4-hydroxyheptanedioic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-06-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        191.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6X8K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2Y N   N   N 0 1 N N N Y Y N 40.368 17.631 11.561 -1.133 1.393  -0.758 N   Y2Y 1  
Y2Y C2  CA  C 0 1 N N N N N N 39.458 15.833 15.481 2.607  -0.602 -0.322 CA  Y2Y 2  
Y2Y C3  C   C 0 1 N N N N N N 39.625 16.364 16.674 3.828  0.208  0.030  C   Y2Y 3  
Y2Y O2  O   O 0 1 N N N N N N 39.338 17.544 16.882 3.705  1.286  0.560  O   Y2Y 4  
Y2Y CB1 CB1 C 0 1 N N N N N N 38.342 17.033 10.720 -2.388 -0.664 -0.320 CB1 Y2Y 5  
Y2Y CG1 CG1 C 0 1 N N N N N N 37.905 18.352 10.017 -3.627 0.090  0.091  CG1 Y2Y 6  
Y2Y OD1 OD1 O 0 1 N N N N N N 38.228 19.446 10.516 -4.839 -0.442 -0.127 OD1 Y2Y 7  
Y2Y OD2 OD2 O 0 1 N N N N N N 37.249 18.321 9.008  -3.528 1.174  0.615  OD2 Y2Y 8  
Y2Y C1  C01 C 0 1 N N N N N N 39.660 16.821 14.381 1.349  0.163  0.094  C01 Y2Y 9  
Y2Y C   C2  C 0 1 N N R Y N Y 39.054 16.369 12.953 0.110  -0.659 -0.264 C2  Y2Y 10 
Y2Y CA  CA1 C 0 1 N N S Y N N 39.213 17.387 11.897 -1.148 0.158  0.038  CA1 Y2Y 11 
Y2Y O   O1  O 0 1 N N N Y N Y 37.999 16.133 13.094 0.095  -1.860 0.511  O1  Y2Y 12 
Y2Y H   H1  H 0 1 N N N Y Y N 40.910 17.860 12.370 -1.111 1.186  -1.745 H1  Y2Y 13 
Y2Y H2  H2  H 0 1 N Y N Y Y N 40.761 16.828 11.113 -1.921 1.980  -0.529 H2  Y2Y 14 
Y2Y H4  H4  H 0 1 N N N N N N 38.435 15.434 15.413 2.586  -0.778 -1.398 H4  Y2Y 15 
Y2Y H5  H5  H 0 1 N N N N N N 40.181 15.013 15.356 2.641  -1.558 0.201  H5  Y2Y 16 
Y2Y H7  H7  H 0 1 N N N N N N 37.454 16.485 11.067 -2.354 -1.620 0.204  H7  Y2Y 17 
Y2Y H8  H8  H 0 1 N N N N N N 38.907 16.406 10.015 -2.409 -0.840 -1.395 H8  Y2Y 18 
Y2Y H9  H9  H 0 1 N N N N N N 37.881 20.152 9.984  -5.604 0.079  0.154  H9  Y2Y 19 
Y2Y H10 H10 H 0 1 N N N N N N 40.741 16.983 14.259 1.371  0.339  1.169  H10 Y2Y 20 
Y2Y H11 H11 H 0 1 N N N N N N 39.178 17.765 14.675 1.315  1.119  -0.430 H11 Y2Y 21 
Y2Y H12 H12 H 0 1 N Y N Y N Y 39.652 15.498 12.647 0.134  -0.910 -1.324 H12 Y2Y 22 
Y2Y HA  H13 H 0 1 N N N Y N N 38.770 18.305 12.311 -1.173 0.410  1.098  H13 Y2Y 23 
Y2Y H14 H14 H 0 1 N N N Y N Y 37.909 15.477 13.775 0.073  -1.712 1.466  H14 Y2Y 24 
Y2Y O1  OXT O 0 1 N N N N N N 39.477 15.503 17.691 5.052  -0.269 -0.245 OXT Y2Y 25 
Y2Y H3  H3  H 0 1 N N N N N N 39.155 15.967 18.455 5.805  0.286  -0.001 H3  Y2Y 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2Y OD2 CG1 DOUB N N 1  
Y2Y CG1 OD1 SING N N 2  
Y2Y CG1 CB1 SING N N 3  
Y2Y CB1 CA  SING N N 4  
Y2Y N   CA  SING N N 5  
Y2Y CA  C   SING N N 6  
Y2Y C   O   SING N N 7  
Y2Y C   C1  SING N N 8  
Y2Y C1  C2  SING N N 9  
Y2Y C2  C3  SING N N 10 
Y2Y C3  O2  DOUB N N 11 
Y2Y N   H   SING N N 12 
Y2Y N   H2  SING N N 13 
Y2Y C2  H4  SING N N 14 
Y2Y C2  H5  SING N N 15 
Y2Y CB1 H7  SING N N 16 
Y2Y CB1 H8  SING N N 17 
Y2Y OD1 H9  SING N N 18 
Y2Y C1  H10 SING N N 19 
Y2Y C1  H11 SING N N 20 
Y2Y C   H12 SING N N 21 
Y2Y CA  HA  SING N N 22 
Y2Y O   H14 SING N N 23 
Y2Y C3  O1  SING N N 24 
Y2Y O1  H3  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2Y SMILES           ACDLabs              12.01 "NC(CC(O)=O)C(CCC(=O)O)O"                                                                          
Y2Y InChI            InChI                1.03  "InChI=1S/C7H13NO5/c8-4(3-7(12)13)5(9)1-2-6(10)11/h4-5,9H,1-3,8H2,(H,10,11)(H,12,13)/t4-,5+/m0/s1" 
Y2Y InChIKey         InChI                1.03  XBEFTDYWKMUVOR-CRCLSJGQSA-N                                                                        
Y2Y SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CC(O)=O)[C@H](O)CCC(O)=O"                                                                 
Y2Y SMILES           CACTVS               3.385 "N[CH](CC(O)=O)[CH](O)CCC(O)=O"                                                                    
Y2Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)[C@H]([C@H](CC(=O)O)N)O"                                                                
Y2Y SMILES           "OpenEye OEToolkits" 2.0.7 "C(CC(=O)O)C(C(CC(=O)O)N)O"                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2Y "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,4R)-3-amino-4-hydroxyheptanedioic acid"          
Y2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},4~{R})-3-azanyl-4-oxidanyl-heptanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2Y "Create component" 2020-06-02 RCSB 
Y2Y "Initial release"  2021-06-02 RCSB 
Y2Y "Modify backbone"  2023-11-03 PDBE 
Y2Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y2Y 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
