data_XGY
#

_chem_comp.id                                   XGY
_chem_comp.name                                 "(4S)-1-methylimidazolidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C4 H11 N3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-16
_chem_comp.pdbx_modified_date                   2021-06-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       101.150
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XGY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S7U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XGY  C01   C1   C  0  1  N  N  N  -17.341  22.311   -7.337   2.433   0.540   0.021  C01   XGY   1  
XGY  N02   N1   N  0  1  N  N  N  -16.832  22.886   -8.328   1.091   0.145  -0.426  N02   XGY   2  
XGY  C03   C2   C  0  1  N  N  N  -16.318  24.264   -8.059   0.745  -1.214   0.066  C03   XGY   3  
XGY  N04   N2   N  0  1  N  N  N  -15.301  24.438   -9.166  -0.739  -1.243   0.014  N04   XGY   4  
XGY  C05   C3   C  0  1  N  N  S  -14.769  23.329   -9.313  -1.152   0.112   0.451  C05   XGY   5  
XGY  N06   N3   N  0  1  N  N  N  -14.151  23.168  -10.645  -2.324   0.557  -0.314  N06   XGY   6  
XGY  C07   C4   C  0  1  N  N  N  -15.953  22.279   -8.990   0.054   1.026   0.161  C07   XGY   7  
XGY  H013  H1   H  0  0  N  N  N  -17.688  21.310   -7.632   2.489   0.471   1.107  H013  XGY   8  
XGY  H011  H2   H  0  0  N  N  N  -16.588  22.218   -6.540   3.175  -0.122  -0.425  H011  XGY   9  
XGY  H012  H3   H  0  0  N  N  N  -18.193  22.901   -6.969   2.631   1.567  -0.288  H012  XGY  10  
XGY  H031  H5   H  0  0  N  N  N  -17.121  25.012   -8.132   1.166  -1.977  -0.590  H031  XGY  11  
XGY  H032  H6   H  0  0  N  N  N  -15.846  24.329   -7.068   1.097  -1.352   1.088  H032  XGY  12  
XGY  H041  H7   H  0  0  N  N  N  -15.752  24.723  -10.012  -1.065  -1.436  -0.921  H041  XGY  13  
XGY  H051  H9   H  0  0  N  N  N  -13.989  23.155   -8.557  -1.376   0.112   1.518  H051  XGY  14  
XGY  H3    H10  H  0  1  N  N  N  -13.737  22.260  -10.713  -3.110  -0.057  -0.161  H3    XGY  15  
XGY  H061  H11  H  0  0  N  N  N  -14.851  23.269  -11.352  -2.562   1.511  -0.089  H061  XGY  16  
XGY  H071  H13  H  0  0  N  N  N  -16.385  21.901   -9.928   0.419   1.473   1.086  H071  XGY  17  
XGY  H072  H14  H  0  0  N  N  N  -15.557  21.437   -8.403  -0.226   1.804  -0.550  H072  XGY  18  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XGY  N02  C01   SING  N  N   1  
XGY  C03  N02   SING  N  N   2  
XGY  N04  C03   SING  N  N   3  
XGY  C05  N04   SING  N  N   4  
XGY  N06  C05   SING  N  N   5  
XGY  C07  C05   SING  N  N   6  
XGY  N02  C07   SING  N  N   7  
XGY  C01  H013  SING  N  N   8  
XGY  C01  H011  SING  N  N   9  
XGY  C01  H012  SING  N  N  10  
XGY  C03  H031  SING  N  N  11  
XGY  C03  H032  SING  N  N  12  
XGY  N04  H041  SING  N  N  13  
XGY  C05  H051  SING  N  N  14  
XGY  N06  H3    SING  N  N  15  
XGY  N06  H061  SING  N  N  16  
XGY  C07  H071  SING  N  N  17  
XGY  C07  H072  SING  N  N  18  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XGY  SMILES            ACDLabs               12.01  "CN1CC(NC1)N"  
XGY  InChI             InChI                 1.03   "InChI=1S/C4H11N3/c1-7-2-4(5)6-3-7/h4,6H,2-3,5H2,1H3/t4-/m0/s1"  
XGY  InChIKey          InChI                 1.03   VFALPSXHULBHMC-BYPYZUCNSA-N  
XGY  SMILES_CANONICAL  CACTVS                3.385  "CN1CN[C@H](N)C1"  
XGY  SMILES            CACTVS                3.385  "CN1CN[CH](N)C1"  
XGY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1C[C@H](NC1)N"  
XGY  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CC(NC1)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XGY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S)-1-methylimidazolidin-4-amine"  
XGY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(4~{S})-1-methylimidazolidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XGY  "Create component"  2020-12-16  RCSB  
XGY  "Initial release"   2021-06-23  RCSB  
##
