data_X5Y
#

_chem_comp.id                                   X5Y
_chem_comp.name                                 "tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H39 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-01
_chem_comp.pdbx_modified_date                   2021-01-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       533.725
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X5Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KVH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X5Y  C10  C1   C  0  1  N  N  N  15.673  -15.363   9.542  -1.889   1.418   0.304  C10  X5Y   1  
X5Y  C02  C2   C  0  1  N  N  N  16.406  -16.142   4.769  -5.772  -3.174   0.030  C02  X5Y   2  
X5Y  C03  C3   C  0  1  N  N  N  15.850  -14.761   4.370  -7.094  -2.464   0.329  C03  X5Y   3  
X5Y  C04  C4   C  0  1  N  N  N  16.974  -16.857   3.555  -5.790  -4.570   0.657  C04  X5Y   4  
X5Y  C06  C5   C  0  1  N  N  N  17.495  -16.624   6.961  -4.518  -1.147   0.140  C06  X5Y   5  
X5Y  C09  C6   C  0  1  N  N  S  16.984  -16.228   9.447  -3.348   0.991   0.129  C09  X5Y   6  
X5Y  C12  C7   C  0  1  N  N  R  14.267  -18.125   9.660   0.842   0.933  -0.301  C12  X5Y   7  
X5Y  C13  C8   C  0  1  N  N  N  13.017  -18.529   8.831   1.060   2.374  -0.770  C13  X5Y   8  
X5Y  C01  C9   C  0  1  N  N  N  15.198  -16.990   5.245  -5.590  -3.297  -1.484  C01  X5Y   9  
X5Y  C14  C10  C  0  1  Y  N  N  12.602  -20.001   8.878   2.392   2.869  -0.270  C14  X5Y  10  
X5Y  C15  C11  C  0  1  Y  N  N  13.097  -20.965   7.983   2.505   3.373   1.013  C15  X5Y  11  
X5Y  C16  C12  C  0  1  Y  N  N  12.698  -22.305   8.052   3.727   3.828   1.472  C16  X5Y  12  
X5Y  C17  C13  C  0  1  Y  N  N  11.794  -22.730   9.018   4.837   3.777   0.649  C17  X5Y  13  
X5Y  C18  C14  C  0  1  Y  N  N  11.296  -21.792   9.912   4.724   3.272  -0.633  C18  X5Y  14  
X5Y  C19  C15  C  0  1  Y  N  N  11.701  -20.460   9.833   3.503   2.814  -1.091  C19  X5Y  15  
X5Y  C20  C16  C  0  1  N  N  N  14.428  -18.930  10.963   1.856   0.033  -0.958  C20  X5Y  16  
X5Y  C23  C17  C  0  1  N  N  N  15.183  -21.059  12.174   4.067  -0.988  -1.054  C23  X5Y  17  
X5Y  C24  C18  C  0  1  N  N  N  15.538  -22.529  11.780   5.363  -0.974  -0.242  C24  X5Y  18  
X5Y  C25  C19  C  0  1  N  N  N  16.481  -23.266  12.764   6.393  -1.889  -0.909  C25  X5Y  19  
X5Y  C26  C20  C  0  1  Y  N  N  17.927  -23.399  12.309   7.670  -1.875  -0.109  C26  X5Y  20  
X5Y  C27  C21  C  0  1  Y  N  N  18.964  -23.631  13.234   7.867  -2.787   0.910  C27  X5Y  21  
X5Y  C29  C22  C  0  1  Y  N  N  20.640  -23.659  11.628   9.946  -1.914   1.378  C29  X5Y  22  
X5Y  C30  C23  C  0  1  Y  N  N  19.696  -23.427  10.623   9.823  -0.976   0.371  C30  X5Y  23  
X5Y  C31  C24  C  0  1  Y  N  N  18.347  -23.300  10.977   8.665  -0.951  -0.391  C31  X5Y  24  
X5Y  C32  C25  C  0  1  N  N  N  17.891  -15.959  10.698  -4.254   1.932   0.926  C32  X5Y  25  
X5Y  C33  C26  C  0  1  Y  N  N  18.635  -17.158  11.269  -5.696   1.589   0.657  C33  X5Y  26  
X5Y  C34  C27  C  0  1  Y  N  N  18.330  -17.709  12.521  -6.346   0.664   1.452  C34  X5Y  27  
X5Y  C35  C28  C  0  1  Y  N  N  19.026  -18.812  13.030  -7.670   0.349   1.205  C35  X5Y  28  
X5Y  C36  C29  C  0  1  Y  N  N  20.054  -19.401  12.303  -8.342   0.959   0.163  C36  X5Y  29  
X5Y  C37  C30  C  0  1  Y  N  N  20.372  -18.868  11.061  -7.692   1.883  -0.633  C37  X5Y  30  
X5Y  C38  C31  C  0  1  Y  N  N  19.669  -17.768  10.563  -6.371   2.202  -0.382  C38  X5Y  31  
X5Y  N08  N1   N  0  1  N  N  N  17.646  -15.901   8.152  -3.518  -0.380   0.618  N08  X5Y  32  
X5Y  N22  N2   N  0  1  N  N  N  14.988  -20.203  10.974   3.081  -0.112  -0.415  N22  X5Y  33  
X5Y  N28  N3   N  0  1  Y  N  N  20.275  -23.762  12.926   8.982  -2.781   1.614  N28  X5Y  34  
X5Y  O05  O1   O  0  1  N  N  N  17.443  -15.954   5.744  -4.674  -2.406   0.589  O05  X5Y  35  
X5Y  O07  O2   O  0  1  N  N  N  17.690  -17.843   6.919  -5.279  -0.701  -0.696  O07  X5Y  36  
X5Y  O21  O3   O  0  1  N  N  N  14.047  -18.452  12.049   1.570  -0.562  -1.976  O21  X5Y  37  
X5Y  S11  S1   S  0  1  N  N  N  14.183  -16.302  10.147  -0.829   0.396  -0.756  S11  X5Y  38  
X5Y  H1   H1   H  0  1  N  N  N  15.859  -14.528  10.234  -1.781   2.465   0.023  H1   X5Y  39  
X5Y  H2   H2   H  0  1  N  N  N  15.448  -14.966   8.541  -1.595   1.288   1.345  H2   X5Y  40  
X5Y  H3   H3   H  0  1  N  N  N  15.443  -14.258   5.260  -7.919  -3.041  -0.091  H3   X5Y  41  
X5Y  H4   H4   H  0  1  N  N  N  16.658  -14.150   3.941  -7.224  -2.377   1.407  H4   X5Y  42  
X5Y  H5   H5   H  0  1  N  N  N  15.052  -14.889   3.624  -7.082  -1.470  -0.118  H5   X5Y  43  
X5Y  H6   H6   H  0  1  N  N  N  17.366  -17.839   3.857  -4.848  -5.075   0.444  H6   X5Y  44  
X5Y  H7   H7   H  0  1  N  N  N  16.180  -16.994   2.806  -5.919  -4.482   1.735  H7   X5Y  45  
X5Y  H8   H8   H  0  1  N  N  N  17.787  -16.255   3.122  -6.614  -5.146   0.237  H8   X5Y  46  
X5Y  H9   H9   H  0  1  N  N  N  16.697  -17.290   9.450  -3.616   1.036  -0.927  H9   X5Y  47  
X5Y  H10  H10  H  0  1  N  N  N  15.170  -18.233   9.042   0.959   0.882   0.781  H10  X5Y  48  
X5Y  H11  H11  H  0  1  N  N  N  13.218  -18.274   7.780   1.046   2.407  -1.860  H11  X5Y  49  
X5Y  H12  H12  H  0  1  N  N  N  12.168  -17.933   9.197   0.265   3.008  -0.377  H12  X5Y  50  
X5Y  H13  H13  H  0  1  N  N  N  14.743  -16.518   6.128  -4.648  -3.803  -1.697  H13  X5Y  51  
X5Y  H14  H14  H  0  1  N  N  N  14.453  -17.052   4.438  -6.414  -3.874  -1.904  H14  X5Y  52  
X5Y  H15  H15  H  0  1  N  N  N  15.541  -18.002   5.506  -5.577  -2.303  -1.930  H15  X5Y  53  
X5Y  H16  H16  H  0  1  N  N  N  13.803  -20.664   7.223   1.638   3.413   1.655  H16  X5Y  54  
X5Y  H17  H17  H  0  1  N  N  N  13.098  -23.017   7.346   3.815   4.222   2.473  H17  X5Y  55  
X5Y  H18  H18  H  0  1  N  N  N  11.487  -23.764   9.072   5.791   4.133   1.007  H18  X5Y  56  
X5Y  H19  H19  H  0  1  N  N  N  10.592  -22.095  10.672   5.591   3.233  -1.276  H19  X5Y  57  
X5Y  H20  H20  H  0  1  N  N  N  11.298  -19.754  10.544   3.416   2.416  -2.091  H20  X5Y  58  
X5Y  H21  H21  H  0  1  N  N  N  16.002  -20.644  12.779   4.267  -0.633  -2.065  H21  X5Y  59  
X5Y  H22  H22  H  0  1  N  N  N  14.255  -21.062  12.765   3.676  -2.005  -1.097  H22  X5Y  60  
X5Y  H23  H23  H  0  1  N  N  N  14.600  -23.100  11.715   5.754   0.042  -0.199  H23  X5Y  61  
X5Y  H24  H24  H  0  1  N  N  N  16.024  -22.509  10.793   5.163  -1.329   0.769  H24  X5Y  62  
X5Y  H25  H25  H  0  1  N  N  N  16.475  -22.716  13.716   6.002  -2.905  -0.952  H25  X5Y  63  
X5Y  H26  H26  H  0  1  N  N  N  16.081  -24.278  12.923   6.593  -1.534  -1.920  H26  X5Y  64  
X5Y  H27  H27  H  0  1  N  N  N  18.690  -23.711  14.276   7.098  -3.513   1.133  H27  X5Y  65  
X5Y  H28  H28  H  0  1  N  N  N  21.682  -23.758  11.362  10.845  -1.940   1.976  H28  X5Y  66  
X5Y  H29  H29  H  0  1  N  N  N  20.002  -23.347   9.590  10.618  -0.270   0.180  H29  X5Y  67  
X5Y  H30  H30  H  0  1  N  N  N  17.614  -23.122  10.205   8.540  -0.230  -1.185  H30  X5Y  68  
X5Y  H31  H31  H  0  1  N  N  N  18.640  -15.206  10.412  -4.046   1.821   1.990  H31  X5Y  69  
X5Y  H32  H32  H  0  1  N  N  N  17.250  -15.553  11.494  -4.063   2.962   0.623  H32  X5Y  70  
X5Y  H33  H33  H  0  1  N  N  N  17.537  -17.271  13.109  -5.821   0.188   2.266  H33  X5Y  71  
X5Y  H34  H34  H  0  1  N  N  N  18.761  -19.210  13.999  -8.178  -0.373   1.827  H34  X5Y  72  
X5Y  H35  H35  H  0  1  N  N  N  20.592  -20.252  12.694  -9.376   0.712  -0.030  H35  X5Y  73  
X5Y  H36  H36  H  0  1  N  N  N  21.167  -19.306  10.476  -8.217   2.359  -1.447  H36  X5Y  74  
X5Y  H37  H37  H  0  1  N  N  N  19.938  -17.376   9.593  -5.862   2.925  -1.004  H37  X5Y  75  
X5Y  H38  H38  H  0  1  N  N  N  18.246  -15.101   8.131  -2.911  -0.735   1.285  H38  X5Y  76  
X5Y  H39  H39  H  0  1  N  N  N  15.286  -20.576  10.096   3.310   0.363   0.399  H39  X5Y  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X5Y  C04  C02  SING  N  N   1  
X5Y  C03  C02  SING  N  N   2  
X5Y  C02  C01  SING  N  N   3  
X5Y  C02  O05  SING  N  N   4  
X5Y  O05  C06  SING  N  N   5  
X5Y  O07  C06  DOUB  N  N   6  
X5Y  C06  N08  SING  N  N   7  
X5Y  C15  C16  DOUB  Y  N   8  
X5Y  C15  C14  SING  Y  N   9  
X5Y  C16  C17  SING  Y  N  10  
X5Y  N08  C09  SING  N  N  11  
X5Y  C13  C14  SING  N  N  12  
X5Y  C13  C12  SING  N  N  13  
X5Y  C14  C19  DOUB  Y  N  14  
X5Y  C17  C18  DOUB  Y  N  15  
X5Y  C09  C10  SING  N  N  16  
X5Y  C09  C32  SING  N  N  17  
X5Y  C10  S11  SING  N  N  18  
X5Y  C12  S11  SING  N  N  19  
X5Y  C12  C20  SING  N  N  20  
X5Y  C19  C18  SING  Y  N  21  
X5Y  C38  C37  DOUB  Y  N  22  
X5Y  C38  C33  SING  Y  N  23  
X5Y  C30  C31  DOUB  Y  N  24  
X5Y  C30  C29  SING  Y  N  25  
X5Y  C32  C33  SING  N  N  26  
X5Y  C20  N22  SING  N  N  27  
X5Y  C20  O21  DOUB  N  N  28  
X5Y  N22  C23  SING  N  N  29  
X5Y  C31  C26  SING  Y  N  30  
X5Y  C37  C36  SING  Y  N  31  
X5Y  C33  C34  DOUB  Y  N  32  
X5Y  C29  N28  DOUB  Y  N  33  
X5Y  C24  C23  SING  N  N  34  
X5Y  C24  C25  SING  N  N  35  
X5Y  C36  C35  DOUB  Y  N  36  
X5Y  C26  C25  SING  N  N  37  
X5Y  C26  C27  DOUB  Y  N  38  
X5Y  C34  C35  SING  Y  N  39  
X5Y  N28  C27  SING  Y  N  40  
X5Y  C10  H1   SING  N  N  41  
X5Y  C10  H2   SING  N  N  42  
X5Y  C03  H3   SING  N  N  43  
X5Y  C03  H4   SING  N  N  44  
X5Y  C03  H5   SING  N  N  45  
X5Y  C04  H6   SING  N  N  46  
X5Y  C04  H7   SING  N  N  47  
X5Y  C04  H8   SING  N  N  48  
X5Y  C09  H9   SING  N  N  49  
X5Y  C12  H10  SING  N  N  50  
X5Y  C13  H11  SING  N  N  51  
X5Y  C13  H12  SING  N  N  52  
X5Y  C01  H13  SING  N  N  53  
X5Y  C01  H14  SING  N  N  54  
X5Y  C01  H15  SING  N  N  55  
X5Y  C15  H16  SING  N  N  56  
X5Y  C16  H17  SING  N  N  57  
X5Y  C17  H18  SING  N  N  58  
X5Y  C18  H19  SING  N  N  59  
X5Y  C19  H20  SING  N  N  60  
X5Y  C23  H21  SING  N  N  61  
X5Y  C23  H22  SING  N  N  62  
X5Y  C24  H23  SING  N  N  63  
X5Y  C24  H24  SING  N  N  64  
X5Y  C25  H25  SING  N  N  65  
X5Y  C25  H26  SING  N  N  66  
X5Y  C27  H27  SING  N  N  67  
X5Y  C29  H28  SING  N  N  68  
X5Y  C30  H29  SING  N  N  69  
X5Y  C31  H30  SING  N  N  70  
X5Y  C32  H31  SING  N  N  71  
X5Y  C32  H32  SING  N  N  72  
X5Y  C34  H33  SING  N  N  73  
X5Y  C35  H34  SING  N  N  74  
X5Y  C36  H35  SING  N  N  75  
X5Y  C37  H36  SING  N  N  76  
X5Y  C38  H37  SING  N  N  77  
X5Y  N08  H38  SING  N  N  78  
X5Y  N22  H39  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X5Y  SMILES            ACDLabs               12.01  "C(SC(C(NCCCc1cnccc1)=O)Cc2ccccc2)C(Cc3ccccc3)NC(OC(C)(C)C)=O"  
X5Y  InChI             InChI                 1.03   "InChI=1S/C31H39N3O3S/c1-31(2,3)37-30(36)34-27(20-24-12-6-4-7-13-24)23-38-28(21-25-14-8-5-9-15-25)29(35)33-19-11-17-26-16-10-18-32-22-26/h4-10,12-16,18,22,27-28H,11,17,19-21,23H2,1-3H3,(H,33,35)(H,34,36)/t27-,28+/m0/s1"  
X5Y  InChIKey          InChI                 1.03   BOLACONGUVQQHM-WUFINQPMSA-N  
X5Y  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N[C@H](CS[C@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3"  
X5Y  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3"  
X5Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3"  
X5Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)NC(Cc1ccccc1)CSC(Cc2ccccc2)C(=O)NCCCc3cccnc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X5Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate"  
X5Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-3-phenyl-propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X5Y  "Create component"  2020-12-01  RCSB  
X5Y  "Initial release"   2021-01-20  RCSB  
##
