data_W9Y
#

_chem_comp.id                                   W9Y
_chem_comp.name                                 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H32 N6 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-04
_chem_comp.pdbx_modified_date                   2021-10-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.515
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W9Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KAD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W9Y  N1   N1   N   0  1  N  N  N  -14.069  21.076  13.996    5.000  -0.207  -0.813  N1   W9Y   1  
W9Y  N3   N2   N   1  1  N  N  N  -10.973  30.282  16.382   -5.906  -2.594  -0.088  N3   W9Y   2  
W9Y  C4   C1   C   0  1  N  N  S  -15.507  19.246  13.949    6.645  -1.569   0.384  C4   W9Y   3  
W9Y  C5   C2   C   0  1  N  N  S  -15.420  20.733  13.725    6.205  -1.031  -0.978  C5   W9Y   4  
W9Y  C6   C3   C   0  1  N  N  N  -15.635  21.002  12.265    7.326  -0.180  -1.577  C6   W9Y   5  
W9Y  C7   C4   C   0  1  N  N  N  -15.076  20.619   9.946    8.756   1.841  -1.241  C7   W9Y   6  
W9Y  C8   C5   C   0  1  N  N  N  -13.950  22.283  14.728    3.789  -1.038  -0.820  C8   W9Y   7  
W9Y  C10  C6   C   0  1  N  N  N  -12.051  23.894  14.832    1.296  -1.011  -0.652  C10  W9Y   8  
W9Y  C13  C7   C   0  1  N  N  N  -11.785  27.459  13.562   -2.428  -0.093  -0.311  C13  W9Y   9  
W9Y  C15  C8   C   0  1  Y  N  N  -13.060  30.091  13.303   -5.007   1.058  -0.145  C15  W9Y  10  
W9Y  C17  C9   C   0  1  Y  N  N  -13.746  32.038  14.501   -7.382   0.852   0.114  C17  W9Y  11  
W9Y  C20  C10  C   0  1  Y  N  N  -16.100  34.760  14.103  -10.233   2.912   0.452  C20  W9Y  12  
W9Y  C21  C11  C   0  1  Y  N  N  -15.423  33.596  13.620   -8.894   2.786   0.303  C21  W9Y  13  
W9Y  C1   C12  C   0  1  N  N  S  -14.643  20.321  11.352    7.634   0.990  -0.642  C1   W9Y  14  
W9Y  C11  C13  C   0  1  N  N  N  -11.447  25.020  14.034    0.065  -0.120  -0.478  C11  W9Y  15  
W9Y  C12  C14  C   0  1  N  N  N  -11.814  26.369  14.616   -1.197  -0.985  -0.486  C12  W9Y  16  
W9Y  C14  C15  C   0  1  Y  N  N  -12.130  29.820  14.273   -4.892  -0.327  -0.173  C14  W9Y  17  
W9Y  C16  C16  C   0  1  Y  N  N  -13.871  31.198  13.417   -6.247   1.645  -0.002  C16  W9Y  18  
W9Y  C18  C17  C   0  1  Y  N  N  -12.798  31.759  15.478   -7.268  -0.531   0.085  C18  W9Y  19  
W9Y  C19  C18  C   0  1  Y  N  N  -11.975  30.637  15.375   -6.027  -1.119  -0.058  C19  W9Y  20  
W9Y  C2   C19  C   0  1  N  N  S  -14.520  18.841  11.649    8.075   0.452   0.721  C2   W9Y  21  
W9Y  C3   C20  C   0  1  N  N  R  -14.470  18.526  13.119    6.953  -0.399   1.320  C3   W9Y  22  
W9Y  C9   C21  C   0  1  N  N  N  -12.993  23.133  13.951    2.557  -0.146  -0.645  C9   W9Y  23  
W9Y  N2   N3   N   0  1  N  N  N  -11.288  28.667  14.146   -3.636  -0.922  -0.318  N2   W9Y  24  
W9Y  N4   N4   N   0  1  Y  N  N  -14.611  33.193  14.576   -8.643   1.450   0.260  N4   W9Y  25  
W9Y  N5   N5   N   0  1  Y  N  N  -14.731  34.016  15.576   -9.765   0.828   0.377  N5   W9Y  26  
W9Y  N6   N6   N   0  1  Y  N  N  -15.613  34.956  15.319  -10.730   1.670   0.493  N6   W9Y  27  
W9Y  O1   O1   O   0  1  N  N  N  -16.407  20.356   9.827    9.123   2.866  -0.315  O1   W9Y  28  
W9Y  O2   O2   O   0  1  N  N  N  -13.427  20.915  11.516    6.462   1.792  -0.481  O2   W9Y  29  
W9Y  O3   O3   O   0  1  N  N  N  -13.386  18.320  11.122    8.362   1.545   1.595  O3   W9Y  30  
W9Y  O4   O4   O   0  1  N  N  N  -14.627  17.180  13.296    7.365  -0.902   2.593  O4   W9Y  31  
W9Y  O5   O5   O   0  1  N  N  N  -15.287  19.011  15.283    5.598  -2.364   0.944  O5   W9Y  32  
W9Y  O6   O6   O   0  1  N  N  N   -9.688  29.939  15.968   -4.957  -3.139   0.447  O6   W9Y  33  
W9Y  O7   O7   O  -1  1  N  N  N  -11.268  30.252  17.748   -6.756  -3.264  -0.648  O7   W9Y  34  
W9Y  H1   H1   H   0  1  N  N  N  -13.651  20.338  14.525    5.054   0.347   0.029  H1   W9Y  35  
W9Y  H3   H3   H   0  1  N  N  N  -16.507  18.898  13.650    7.539  -2.181   0.262  H3   W9Y  36  
W9Y  H4   H4   H   0  1  N  N  N  -16.139  21.282  14.352    5.985  -1.865  -1.645  H4   W9Y  37  
W9Y  H5   H5   H   0  1  N  N  N  -15.564  22.087  12.101    8.220  -0.792  -1.700  H5   W9Y  38  
W9Y  H6   H6   H   0  1  N  N  N  -16.644  20.656  11.996    7.012   0.203  -2.548  H6   W9Y  39  
W9Y  H7   H7   H   0  1  N  N  N  -14.511  19.988   9.244    9.620   1.210  -1.446  H7   W9Y  40  
W9Y  H8   H8   H   0  1  N  N  N  -14.888  21.679   9.719    8.410   2.297  -2.169  H8   W9Y  41  
W9Y  H9   H9   H   0  1  N  N  N  -13.556  22.084  15.735    3.719  -1.571  -1.768  H9   W9Y  42  
W9Y  H10  H10  H   0  1  N  N  N  -14.927  22.781  14.809    3.836  -1.756  -0.001  H10  W9Y  43  
W9Y  H11  H11  H   0  1  N  N  N  -12.599  24.303  15.694    1.343  -1.730   0.166  H11  W9Y  44  
W9Y  H12  H12  H   0  1  N  N  N  -11.255  23.224  15.188    1.227  -1.545  -1.600  H12  W9Y  45  
W9Y  H13  H13  H   0  1  N  N  N  -12.802  27.627  13.179   -2.359   0.440   0.637  H13  W9Y  46  
W9Y  H14  H14  H   0  1  N  N  N  -11.128  27.153  12.735   -2.475   0.625  -1.130  H14  W9Y  47  
W9Y  H15  H15  H   0  1  N  N  N  -13.157  29.436  12.449   -4.124   1.674  -0.231  H15  W9Y  48  
W9Y  H16  H16  H   0  1  N  N  N  -16.845  35.350  13.589  -10.792   3.833   0.529  H16  W9Y  49  
W9Y  H17  H17  H   0  1  N  N  N  -15.553  33.134  12.653   -8.170   3.586   0.232  H17  W9Y  50  
W9Y  H18  H18  H   0  1  N  N  N  -11.817  24.964  13.000    0.134   0.414   0.470  H18  W9Y  51  
W9Y  H19  H19  H   0  1  N  N  N  -10.352  24.914  14.038    0.018   0.599  -1.297  H19  W9Y  52  
W9Y  H20  H20  H   0  1  N  N  N  -11.097  26.622  15.411   -1.150  -1.703   0.333  H20  W9Y  53  
W9Y  H21  H21  H   0  1  N  N  N  -12.827  26.311  15.041   -1.266  -1.519  -1.433  H21  W9Y  54  
W9Y  H22  H22  H   0  1  N  N  N  -14.607  31.408  12.655   -6.336   2.721   0.019  H22  W9Y  55  
W9Y  H23  H23  H   0  1  N  N  N  -12.697  32.419  16.327   -8.151  -1.147   0.176  H23  W9Y  56  
W9Y  H24  H24  H   0  1  N  N  N  -15.400  18.337  11.223    8.969  -0.160   0.598  H24  W9Y  57  
W9Y  H25  H25  H   0  1  N  N  N  -13.480  18.830  13.490    6.059   0.213   1.443  H25  W9Y  58  
W9Y  H26  H26  H   0  1  N  N  N  -12.406  22.483  13.285    2.627   0.388   0.303  H26  W9Y  59  
W9Y  H27  H27  H   0  1  N  N  N  -13.569  23.851  13.348    2.510   0.572  -1.464  H27  W9Y  60  
W9Y  H28  H28  H   0  1  N  N  N  -10.983  28.433  15.069   -3.564  -1.883  -0.423  H28  W9Y  61  
W9Y  H29  H29  H   0  1  N  N  N  -16.689  20.542   8.939    9.831   3.445  -0.630  H29  W9Y  62  
W9Y  H30  H30  H   0  1  N  N  N  -13.111  20.752  12.397    6.584   2.555   0.101  H30  W9Y  63  
W9Y  H31  H31  H   0  1  N  N  N  -13.339  17.393  11.325    8.648   1.278   2.479  H31  W9Y  64  
W9Y  H32  H32  H   0  1  N  N  N  -14.596  16.976  14.223    6.701  -1.451   3.032  H32  W9Y  65  
W9Y  H33  H33  H   0  1  N  N  N  -15.943  19.467  15.798    5.808  -2.739   1.811  H33  W9Y  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W9Y  O1   C7   SING  N  N   1  
W9Y  C7   C1   SING  N  N   2  
W9Y  O3   C2   SING  N  N   3  
W9Y  C1   O2   SING  N  N   4  
W9Y  C1   C2   SING  N  N   5  
W9Y  C1   C6   SING  N  N   6  
W9Y  C2   C3   SING  N  N   7  
W9Y  C6   C5   SING  N  N   8  
W9Y  C3   O4   SING  N  N   9  
W9Y  C3   C4   SING  N  N  10  
W9Y  C15  C16  DOUB  Y  N  11  
W9Y  C15  C14  SING  Y  N  12  
W9Y  C16  C17  SING  Y  N  13  
W9Y  C13  N2   SING  N  N  14  
W9Y  C13  C12  SING  N  N  15  
W9Y  C21  C20  DOUB  Y  N  16  
W9Y  C21  N4   SING  Y  N  17  
W9Y  C5   C4   SING  N  N  18  
W9Y  C5   N1   SING  N  N  19  
W9Y  C4   O5   SING  N  N  20  
W9Y  C9   C8   SING  N  N  21  
W9Y  C9   C10  SING  N  N  22  
W9Y  N1   C8   SING  N  N  23  
W9Y  C11  C12  SING  N  N  24  
W9Y  C11  C10  SING  N  N  25  
W9Y  C20  N6   SING  Y  N  26  
W9Y  N2   C14  SING  N  N  27  
W9Y  C14  C19  DOUB  Y  N  28  
W9Y  C17  N4   SING  N  N  29  
W9Y  C17  C18  DOUB  Y  N  30  
W9Y  N4   N5   SING  Y  N  31  
W9Y  N6   N5   DOUB  Y  N  32  
W9Y  C19  C18  SING  Y  N  33  
W9Y  C19  N3   SING  N  N  34  
W9Y  O6   N3   DOUB  N  N  35  
W9Y  N3   O7   SING  N  N  36  
W9Y  N1   H1   SING  N  N  37  
W9Y  C4   H3   SING  N  N  38  
W9Y  C5   H4   SING  N  N  39  
W9Y  C6   H5   SING  N  N  40  
W9Y  C6   H6   SING  N  N  41  
W9Y  C7   H7   SING  N  N  42  
W9Y  C7   H8   SING  N  N  43  
W9Y  C8   H9   SING  N  N  44  
W9Y  C8   H10  SING  N  N  45  
W9Y  C10  H11  SING  N  N  46  
W9Y  C10  H12  SING  N  N  47  
W9Y  C13  H13  SING  N  N  48  
W9Y  C13  H14  SING  N  N  49  
W9Y  C15  H15  SING  N  N  50  
W9Y  C20  H16  SING  N  N  51  
W9Y  C21  H17  SING  N  N  52  
W9Y  C11  H18  SING  N  N  53  
W9Y  C11  H19  SING  N  N  54  
W9Y  C12  H20  SING  N  N  55  
W9Y  C12  H21  SING  N  N  56  
W9Y  C16  H22  SING  N  N  57  
W9Y  C18  H23  SING  N  N  58  
W9Y  C2   H24  SING  N  N  59  
W9Y  C3   H25  SING  N  N  60  
W9Y  C9   H26  SING  N  N  61  
W9Y  C9   H27  SING  N  N  62  
W9Y  N2   H28  SING  N  N  63  
W9Y  O1   H29  SING  N  N  64  
W9Y  O2   H30  SING  N  N  65  
W9Y  O3   H31  SING  N  N  66  
W9Y  O4   H32  SING  N  N  67  
W9Y  O5   H33  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W9Y  SMILES            ACDLabs               12.01  "N(CCCCCCNc2ccc(n1ccnn1)cc2[N+]([O-])=O)C3C(O)C(C(C(C3)(CO)O)O)O"  
W9Y  InChI             InChI                 1.03   "InChI=1S/C21H32N6O7/c28-13-21(32)12-16(18(29)19(30)20(21)31)23-8-4-2-1-3-7-22-15-6-5-14(11-17(15)27(33)34)26-10-9-24-25-26/h5-6,9-11,16,18-20,22-23,28-32H,1-4,7-8,12-13H2/t16-,18-,19+,20-,21-/m0/s1"  
W9Y  InChIKey          InChI                 1.03   XQDBSGWKEMRNGZ-RQUKQETFSA-N  
W9Y  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[C@H](O)[C@@H](O)[C@@H]1O"  
W9Y  SMILES            CACTVS                3.385  "OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[CH](O)[CH](O)[CH]1O"  
W9Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O"  
W9Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W9Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol"  
W9Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3-triazol-1-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W9Y  "Create component"  2020-10-04  RCSB  
W9Y  "Initial release"   2021-10-06  RCSB  
##
