data_W5Y
#

_chem_comp.id                                   W5Y
_chem_comp.name                                 "5'-O-(L-phenylalanylsulfamoyl)adenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H23 N7 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       493.494
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W5Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K98
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W5Y  CD1    C1   C  0  1  Y  N  N  -16.120   4.696  -67.004   5.788   1.704  -1.591  CD1    W5Y   1  
W5Y  CE1    C2   C  0  1  Y  N  N  -17.062   4.362  -67.974   6.336   2.837  -2.164  CE1    W5Y   2  
W5Y  CZ     C3   C  0  1  Y  N  N  -17.003   4.919  -69.258   6.551   3.966  -1.395  CZ     W5Y   3  
W5Y  CE2    C4   C  0  1  Y  N  N  -15.993   5.830  -69.574   6.217   3.962  -0.054  CE2    W5Y   4  
W5Y  CD2    C5   C  0  1  Y  N  N  -15.049   6.169  -68.603   5.669   2.830   0.519  CD2    W5Y   5  
W5Y  CG     C6   C  0  1  Y  N  N  -15.100   5.608  -67.324   5.449   1.703  -0.250  CG     W5Y   6  
W5Y  CB     C7   C  0  1  N  N  N  -14.080   5.984  -66.270   4.851   0.469   0.374  CB     W5Y   7  
W5Y  CA     C8   C  0  1  N  N  S  -12.775   5.189  -66.374   3.326   0.529   0.264  CA     W5Y   8  
W5Y  N      N1   N  0  1  N  N  N  -12.954   3.798  -66.039   2.821   1.653   1.063  N      W5Y   9  
W5Y  C      C9   C  0  1  N  N  N  -11.728   5.742  -65.451   2.734  -0.758   0.776  C      W5Y  10  
W5Y  O      O1   O  0  1  N  N  N  -11.362   5.143  -64.450   2.275  -0.810   1.898  O      W5Y  11  
W5Y  NAT    N2   N  0  1  N  N  N  -11.200   6.895  -65.821   2.714  -1.852  -0.011  NAT    W5Y  12  
W5Y  SBI    S1   S  0  1  N  N  N  -10.235   7.704  -64.831   2.064  -3.266   0.552  SBI    W5Y  13  
W5Y  OAD    O2   O  0  1  N  N  N   -8.975   7.057  -64.664   2.161  -4.204  -0.511  OAD    W5Y  14  
W5Y  OAE    O3   O  0  1  N  N  N  -10.068   9.014  -65.385   2.631  -3.486   1.837  OAE    W5Y  15  
W5Y  "O5'"  O4   O  0  1  N  N  N  -10.869   7.862  -63.413   0.578  -3.022   0.775  "O5'"  W5Y  16  
W5Y  "C5'"  C10  C  0  1  N  N  N  -12.175   8.451  -63.294  -0.190  -2.972  -0.429  "C5'"  W5Y  17  
W5Y  "C4'"  C11  C  0  1  N  N  R  -12.244   9.367  -62.070  -1.660  -2.723  -0.086  "C4'"  W5Y  18  
W5Y  "O4'"  O5   O  0  1  N  N  N  -11.796   8.756  -60.848  -1.815  -1.410   0.477  "O4'"  W5Y  19  
W5Y  "C3'"  C12  C  0  1  N  N  S  -11.345  10.580  -62.233  -2.513  -2.774  -1.369  "C3'"  W5Y  20  
W5Y  "O3'"  O6   O  0  1  N  N  N  -12.002  11.578  -63.004  -3.496  -3.807  -1.275  "O3'"  W5Y  21  
W5Y  "C2'"  C13  C  0  1  N  N  R  -11.142  11.011  -60.798  -3.192  -1.384  -1.429  "C2'"  W5Y  22  
W5Y  "O2'"  O7   O  0  1  N  N  N  -12.326  11.695  -60.385  -4.555  -1.500  -1.843  "O2'"  W5Y  23  
W5Y  "C1'"  C14  C  0  1  N  N  R  -11.119   9.717  -60.017  -3.100  -0.914   0.045  "C1'"  W5Y  24  
W5Y  N9     N3   N  0  1  Y  N  N   -9.732   9.252  -59.725  -3.143   0.548   0.124  N9     W5Y  25  
W5Y  C8     C15  C  0  1  Y  N  N   -8.898   8.693  -60.619  -2.070   1.389   0.092  C8     W5Y  26  
W5Y  N7     N4   N  0  1  Y  N  N   -7.723   8.351  -60.050  -2.471   2.624   0.184  N7     W5Y  27  
W5Y  C5     C16  C  0  1  Y  N  N   -7.784   8.697  -58.758  -3.822   2.653   0.281  C5     W5Y  28  
W5Y  C4     C17  C  0  1  Y  N  N   -9.112   9.286  -58.547  -4.269   1.322   0.238  C4     W5Y  29  
W5Y  N3     N5   N  0  1  Y  N  N   -9.448   9.720  -57.320  -5.574   1.077   0.310  N3     W5Y  30  
W5Y  C2     C18  C  0  1  Y  N  N   -8.586   9.617  -56.306  -6.437   2.065   0.417  C2     W5Y  31  
W5Y  N1     N6   N  0  1  Y  N  N   -7.351   9.080  -56.425  -6.064   3.331   0.459  N1     W5Y  32  
W5Y  C6     C19  C  0  1  Y  N  N   -6.875   8.612  -57.601  -4.781   3.673   0.401  C6     W5Y  33  
W5Y  N6     N7   N  0  1  N  N  N   -5.626   8.065  -57.702  -4.400   5.003   0.444  N6     W5Y  34  
W5Y  H1     H1   H  0  1  N  N  N  -16.173   4.259  -66.018   5.621   0.822  -2.191  H1     W5Y  35  
W5Y  H2     H2   H  0  1  N  N  N  -17.849   3.663  -67.733   6.597   2.839  -3.212  H2     W5Y  36  
W5Y  H3     H3   H  0  1  N  N  N  -17.737   4.645  -70.002   6.980   4.850  -1.843  H3     W5Y  37  
W5Y  H4     H4   H  0  1  N  N  N  -15.943   6.268  -70.560   6.386   4.844   0.547  H4     W5Y  38  
W5Y  H5     H5   H  0  1  N  N  N  -14.268   6.875  -68.844   5.409   2.827   1.567  H5     W5Y  39  
W5Y  H6     H6   H  0  1  N  N  N  -13.846   7.053  -66.377   5.218  -0.416  -0.146  H6     W5Y  40  
W5Y  H7     H7   H  0  1  N  N  N  -14.520   5.803  -65.278   5.137   0.418   1.425  H7     W5Y  41  
W5Y  H8     H8   H  0  1  N  N  N  -12.407   5.269  -67.407   3.043   0.669  -0.780  H8     W5Y  42  
W5Y  H9     H9   H  0  1  N  N  N  -12.080   3.320  -66.120   1.823   1.754   0.956  H9     W5Y  43  
W5Y  H10    H10  H  0  1  N  N  N  -13.289   3.722  -65.100   3.071   1.546   2.035  H10    W5Y  44  
W5Y  H12    H12  H  0  1  N  N  N  -11.404   7.266  -66.727   3.081  -1.810  -0.908  H12    W5Y  45  
W5Y  H13    H13  H  0  1  N  N  N  -12.390   9.039  -64.198   0.178  -2.164  -1.061  H13    W5Y  46  
W5Y  H14    H14  H  0  1  N  N  N  -12.924   7.652  -63.190  -0.096  -3.920  -0.959  H14    W5Y  47  
W5Y  H15    H15  H  0  1  N  N  N  -13.282   9.713  -61.952  -2.008  -3.474   0.623  H15    W5Y  48  
W5Y  H16    H16  H  0  1  N  N  N  -10.386  10.285  -62.683  -1.879  -2.927  -2.243  H16    W5Y  49  
W5Y  H17    H17  H  0  1  N  N  N  -11.431  12.332  -63.100  -4.061  -3.885  -2.056  H17    W5Y  50  
W5Y  H18    H18  H  0  1  N  N  N  -10.221  11.598  -60.663  -2.643  -0.711  -2.087  H18    W5Y  51  
W5Y  H19    H19  H  0  1  N  N  N  -12.230  11.980  -59.484  -4.666  -1.876  -2.727  H19    W5Y  52  
W5Y  H20    H20  H  0  1  N  N  N  -11.666   9.855  -59.073  -3.901  -1.355   0.639  H20    W5Y  53  
W5Y  H21    H21  H  0  1  N  N  N   -9.138   8.537  -61.660  -1.040   1.076   0.004  H21    W5Y  54  
W5Y  H22    H22  H  0  1  N  N  N   -8.892   9.983  -55.337  -7.490   1.831   0.473  H22    W5Y  55  
W5Y  H23    H23  H  0  1  N  N  N   -5.181   8.082  -56.807  -3.462   5.240   0.391  H23    W5Y  56  
W5Y  H24    H24  H  0  1  N  N  N   -5.701   7.119  -58.019  -5.073   5.697   0.527  H24    W5Y  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W5Y  CE2    CZ     DOUB  Y  N   1  
W5Y  CE2    CD2    SING  Y  N   2  
W5Y  CZ     CE1    SING  Y  N   3  
W5Y  CD2    CG     DOUB  Y  N   4  
W5Y  CE1    CD1    DOUB  Y  N   5  
W5Y  CG     CD1    SING  Y  N   6  
W5Y  CG     CB     SING  N  N   7  
W5Y  CA     CB     SING  N  N   8  
W5Y  CA     N      SING  N  N   9  
W5Y  CA     C      SING  N  N  10  
W5Y  NAT    C      SING  N  N  11  
W5Y  NAT    SBI    SING  N  N  12  
W5Y  C      O      DOUB  N  N  13  
W5Y  OAE    SBI    DOUB  N  N  14  
W5Y  SBI    OAD    DOUB  N  N  15  
W5Y  SBI    "O5'"  SING  N  N  16  
W5Y  "O5'"  "C5'"  SING  N  N  17  
W5Y  "C5'"  "C4'"  SING  N  N  18  
W5Y  "O3'"  "C3'"  SING  N  N  19  
W5Y  "C3'"  "C4'"  SING  N  N  20  
W5Y  "C3'"  "C2'"  SING  N  N  21  
W5Y  "C4'"  "O4'"  SING  N  N  22  
W5Y  "O4'"  "C1'"  SING  N  N  23  
W5Y  "C2'"  "O2'"  SING  N  N  24  
W5Y  "C2'"  "C1'"  SING  N  N  25  
W5Y  C8     N7     DOUB  Y  N  26  
W5Y  C8     N9     SING  Y  N  27  
W5Y  N7     C5     SING  Y  N  28  
W5Y  "C1'"  N9     SING  N  N  29  
W5Y  N9     C4     SING  Y  N  30  
W5Y  C5     C4     DOUB  Y  N  31  
W5Y  C5     C6     SING  Y  N  32  
W5Y  C4     N3     SING  Y  N  33  
W5Y  N6     C6     SING  N  N  34  
W5Y  C6     N1     DOUB  Y  N  35  
W5Y  N3     C2     DOUB  Y  N  36  
W5Y  N1     C2     SING  Y  N  37  
W5Y  CD1    H1     SING  N  N  38  
W5Y  CE1    H2     SING  N  N  39  
W5Y  CZ     H3     SING  N  N  40  
W5Y  CE2    H4     SING  N  N  41  
W5Y  CD2    H5     SING  N  N  42  
W5Y  CB     H6     SING  N  N  43  
W5Y  CB     H7     SING  N  N  44  
W5Y  CA     H8     SING  N  N  45  
W5Y  N      H9     SING  N  N  46  
W5Y  N      H10    SING  N  N  47  
W5Y  NAT    H12    SING  N  N  48  
W5Y  "C5'"  H13    SING  N  N  49  
W5Y  "C5'"  H14    SING  N  N  50  
W5Y  "C4'"  H15    SING  N  N  51  
W5Y  "C3'"  H16    SING  N  N  52  
W5Y  "O3'"  H17    SING  N  N  53  
W5Y  "C2'"  H18    SING  N  N  54  
W5Y  "O2'"  H19    SING  N  N  55  
W5Y  "C1'"  H20    SING  N  N  56  
W5Y  C8     H21    SING  N  N  57  
W5Y  C2     H22    SING  N  N  58  
W5Y  N6     H23    SING  N  N  59  
W5Y  N6     H24    SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W5Y  SMILES            ACDLabs               12.01  "c1ccccc1CC(N)C(=O)NS(=O)(OCC2OC(C(C2O)O)n3c4c(nc3)c(ncn4)N)=O"  
W5Y  InChI             InChI                 1.03   "InChI=1S/C19H23N7O7S/c20-11(6-10-4-2-1-3-5-10)18(29)25-34(30,31)32-7-12-14(27)15(28)19(33-12)26-9-24-13-16(21)22-8-23-17(13)26/h1-5,8-9,11-12,14-15,19,27-28H,6-7,20H2,(H,25,29)(H2,21,22,23)/t11-,12+,14+,15+,19+/m0/s1"  
W5Y  InChIKey          InChI                 1.03   QGOJGCAOMCBQFJ-QTOWJTHWSA-N  
W5Y  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](Cc1ccccc1)C(=O)N[S](=O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34"  
W5Y  SMILES            CACTVS                3.385  "N[CH](Cc1ccccc1)C(=O)N[S](=O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34"  
W5Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[C@@H](C(=O)NS(=O)(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N"  
W5Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC(C(=O)NS(=O)(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W5Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-(L-phenylalanylsulfamoyl)adenosine"  
W5Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-phenyl-propanoyl]sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W5Y  "Create component"  2020-09-29  RCSB  
W5Y  "Initial release"   2021-05-12  RCSB  
##
