data_VXY
#

_chem_comp.id                                   VXY
_chem_comp.name                                 "2,2-difluoroethyl (3S)-3-{[2'-amino-5-fluoro-2-(morpholin-4-yl)[4,5'-bipyrimidin]-6-yl]amino}-3-(hydroxymethyl)pyrrolidine-1-carboxylate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 F3 N8 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-21
_chem_comp.pdbx_modified_date                   2021-01-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       498.459
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VXY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K6M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VXY  C4   C1   C  0  1  Y  N  N  -16.817   6.123  27.838   4.837   1.786   1.270  C4   VXY   1  
VXY  C6   C2   C  0  1  Y  N  N  -15.534   7.984  27.059   4.092   2.806  -0.771  C6   VXY   2  
VXY  C5   C3   C  0  1  Y  N  N  -16.532   7.495  27.927   3.951   1.799   0.188  C5   VXY   3  
VXY  C28  C4   C  0  1  Y  N  N  -18.503   8.229  29.319   1.648   1.100  -0.478  C28  VXY   4  
VXY  C8   C5   C  0  1  Y  N  N  -17.194   8.407  28.849   2.891   0.771   0.061  C8   VXY   5  
VXY  C12  C6   C  0  1  Y  N  N  -19.091   9.267  30.109   0.683   0.098  -0.578  C12  VXY   6  
VXY  C10  C7   C  0  1  Y  N  N  -17.086  10.440  29.989   2.171  -1.405   0.350  C10  VXY   7  
VXY  C2   C8   C  0  1  Y  N  N  -15.249   5.878  26.155   5.863   3.664   0.424  C2   VXY   8  
VXY  C21  C9   C  0  1  N  N  N  -21.737  12.562  33.835  -5.038   0.485  -0.793  C21  VXY   9  
VXY  C17  C10  C  0  1  N  N  N  -22.571   9.857  31.479  -1.956  -1.332   0.041  C17  VXY  10  
VXY  C18  C11  C  0  1  N  N  N  -23.006  10.956  32.454  -3.058  -0.349   0.508  C18  VXY  11  
VXY  C31  C12  C  0  1  N  N  N  -16.814  12.458  31.394   2.223  -3.664  -0.308  C31  VXY  12  
VXY  C35  C13  C  0  1  N  N  N  -14.881  11.539  30.141   3.806  -2.802   1.305  C35  VXY  13  
VXY  C20  C14  C  0  1  N  N  N  -20.559  11.064  32.182  -2.864  -0.152  -1.868  C20  VXY  14  
VXY  C32  C15  C  0  1  N  N  N  -16.132  13.833  31.287   2.471  -5.079   0.220  C32  VXY  15  
VXY  C34  C16  C  0  1  N  N  N  -14.321  12.973  30.104   4.040  -4.228   1.818  C34  VXY  16  
VXY  C14  C17  C  0  1  N  N  S  -21.175  10.308  30.975  -1.534  -0.705  -1.315  C14  VXY  17  
VXY  C15  C18  C  0  1  N  N  N  -21.335  11.291  29.785  -0.961  -1.773  -2.249  C15  VXY  18  
VXY  C24  C19  C  0  1  N  N  N  -20.339  14.040  35.058  -7.126   1.102   0.183  C24  VXY  19  
VXY  C25  C20  C  0  1  N  N  N  -19.486  15.095  34.272  -7.793   1.181   1.558  C25  VXY  20  
VXY  N3   N1   N  0  1  Y  N  N  -16.224   5.295  26.960   5.765   2.722   1.351  N3   VXY  21  
VXY  N7   N2   N  0  1  Y  N  N  -14.875   7.222  26.174   5.049   3.704  -0.622  N7   VXY  22  
VXY  N9   N3   N  0  1  Y  N  N  -16.461   9.498  29.201   3.112  -0.482   0.461  N9   VXY  23  
VXY  N11  N4   N  0  1  Y  N  N  -18.387  10.384  30.460   0.979  -1.129  -0.157  N11  VXY  24  
VXY  N30  N5   N  0  1  N  N  N  -16.360  11.618  30.257   2.439  -2.695   0.776  N30  VXY  25  
VXY  N19  N6   N  0  1  N  N  N  -21.734  11.507  32.954  -3.769   0.036  -0.725  N19  VXY  26  
VXY  N1   N7   N  0  1  N  N  N  -14.592   5.057  25.281   6.853   4.622   0.542  N1   VXY  27  
VXY  N13  N8   N  0  1  N  N  N  -20.388   9.132  30.587  -0.568   0.377  -1.107  N13  VXY  28  
VXY  O22  O1   O  0  1  N  N  N  -22.733  13.078  34.335  -5.523   0.773  -1.869  O22  VXY  29  
VXY  O33  O2   O  0  1  N  N  N  -14.738  13.693  31.232   3.794  -5.156   0.758  O33  VXY  30  
VXY  O16  O3   O  0  1  N  N  N  -21.898  10.545  28.742  -0.471  -1.151  -3.439  O16  VXY  31  
VXY  O23  O4   O  0  1  N  N  N  -20.469  12.953  34.179  -5.767   0.613   0.331  O23  VXY  32  
VXY  F29  F1   F  0  1  N  N  N  -19.216   7.152  29.015   1.383   2.359  -0.890  F29  VXY  33  
VXY  F26  F2   F  0  1  N  N  N  -18.170  14.940  34.516  -7.816  -0.091   2.139  F26  VXY  34  
VXY  F27  F3   F  0  1  N  N  N  -19.592  14.872  32.947  -7.070   2.055   2.377  F27  VXY  35  
VXY  H38  H1   H  0  1  N  N  N  -17.553   5.710  28.512   4.760   1.023   2.031  H38  VXY  36  
VXY  H39  H2   H  0  1  N  N  N  -15.286   9.034  27.110   3.427   2.850  -1.621  H39  VXY  37  
VXY  H44  H3   H  0  1  N  N  N  -23.279   9.779  30.641  -1.121  -1.345   0.742  H44  VXY  38  
VXY  H45  H4   H  0  1  N  N  N  -22.503   8.887  31.993  -2.361  -2.334  -0.101  H45  VXY  39  
VXY  H47  H5   H  0  1  N  N  N  -23.591  11.730  31.936  -3.739  -0.843   1.200  H47  VXY  40  
VXY  H46  H6   H  0  1  N  N  N  -23.602  10.536  33.278  -2.610   0.528   0.977  H46  VXY  41  
VXY  H53  H7   H  0  1  N  N  N  -17.906  12.581  31.352   2.912  -3.454  -1.126  H53  VXY  42  
VXY  H54  H8   H  0  1  N  N  N  -16.536  11.979  32.344   1.197  -3.585  -0.668  H54  VXY  43  
VXY  H60  H9   H  0  1  N  N  N  -14.608  11.009  29.216   3.936  -2.094   2.124  H60  VXY  44  
VXY  H59  H10  H  0  1  N  N  N  -14.468  11.001  31.007   4.521  -2.578   0.514  H59  VXY  45  
VXY  H49  H11  H  0  1  N  N  N  -19.925  10.395  32.782  -2.690   0.803  -2.364  H49  VXY  46  
VXY  H48  H12  H  0  1  N  N  N  -19.965  11.925  31.843  -3.299  -0.861  -2.573  H48  VXY  47  
VXY  H55  H13  H  0  1  N  N  N  -16.400  14.438  32.166   1.747  -5.308   1.002  H55  VXY  48  
VXY  H56  H14  H  0  1  N  N  N  -16.480  14.339  30.374   2.367  -5.796  -0.595  H56  VXY  49  
VXY  H58  H15  H  0  1  N  N  N  -13.222  12.932  30.087   5.070  -4.328   2.159  H58  VXY  50  
VXY  H57  H16  H  0  1  N  N  N  -14.683  13.480  29.197   3.361  -4.433   2.645  H57  VXY  51  
VXY  H42  H17  H  0  1  N  N  N  -20.355  11.690  29.484  -0.144  -2.293  -1.749  H42  VXY  52  
VXY  H41  H18  H  0  1  N  N  N  -22.000  12.122  30.063  -1.742  -2.487  -2.508  H41  VXY  53  
VXY  H50  H19  H  0  1  N  N  N  -21.327  14.453  35.312  -7.690   0.421  -0.455  H50  VXY  54  
VXY  H51  H20  H  0  1  N  N  N  -19.822  13.733  35.979  -7.108   2.094  -0.270  H51  VXY  55  
VXY  H52  H21  H  0  1  N  N  N  -19.835  16.102  34.545  -8.813   1.548   1.446  H52  VXY  56  
VXY  H37  H22  H  0  1  N  N  N  -13.914   5.586  24.771   6.944   5.311  -0.135  H37  VXY  57  
VXY  H36  H23  H  0  1  N  N  N  -14.133   4.328  25.789   7.455   4.606   1.302  H36  VXY  58  
VXY  H40  H24  H  0  1  N  N  N  -20.908   8.665  29.872  -0.804   1.288  -1.340  H40  VXY  59  
VXY  H43  H25  H  0  1  N  N  N  -22.018  11.103  27.982  -0.092  -1.769  -4.079  H43  VXY  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VXY  N1   C2   SING  N  N   1  
VXY  C2   N7   DOUB  Y  N   2  
VXY  C2   N3   SING  Y  N   3  
VXY  N7   C6   SING  Y  N   4  
VXY  N3   C4   DOUB  Y  N   5  
VXY  C6   C5   DOUB  Y  N   6  
VXY  C4   C5   SING  Y  N   7  
VXY  C5   C8   SING  N  N   8  
VXY  O16  C15  SING  N  N   9  
VXY  C8   N9   DOUB  Y  N  10  
VXY  C8   C28  SING  Y  N  11  
VXY  F29  C28  SING  N  N  12  
VXY  N9   C10  SING  Y  N  13  
VXY  C28  C12  DOUB  Y  N  14  
VXY  C15  C14  SING  N  N  15  
VXY  C10  N30  SING  N  N  16  
VXY  C10  N11  DOUB  Y  N  17  
VXY  C34  C35  SING  N  N  18  
VXY  C34  O33  SING  N  N  19  
VXY  C12  N11  SING  Y  N  20  
VXY  C12  N13  SING  N  N  21  
VXY  C35  N30  SING  N  N  22  
VXY  N30  C31  SING  N  N  23  
VXY  N13  C14  SING  N  N  24  
VXY  C14  C17  SING  N  N  25  
VXY  C14  C20  SING  N  N  26  
VXY  O33  C32  SING  N  N  27  
VXY  C32  C31  SING  N  N  28  
VXY  C17  C18  SING  N  N  29  
VXY  C20  N19  SING  N  N  30  
VXY  C18  N19  SING  N  N  31  
VXY  F27  C25  SING  N  N  32  
VXY  N19  C21  SING  N  N  33  
VXY  C21  O23  SING  N  N  34  
VXY  C21  O22  DOUB  N  N  35  
VXY  O23  C24  SING  N  N  36  
VXY  C25  F26  SING  N  N  37  
VXY  C25  C24  SING  N  N  38  
VXY  C4   H38  SING  N  N  39  
VXY  C6   H39  SING  N  N  40  
VXY  C17  H44  SING  N  N  41  
VXY  C17  H45  SING  N  N  42  
VXY  C18  H47  SING  N  N  43  
VXY  C18  H46  SING  N  N  44  
VXY  C31  H53  SING  N  N  45  
VXY  C31  H54  SING  N  N  46  
VXY  C35  H60  SING  N  N  47  
VXY  C35  H59  SING  N  N  48  
VXY  C20  H49  SING  N  N  49  
VXY  C20  H48  SING  N  N  50  
VXY  C32  H55  SING  N  N  51  
VXY  C32  H56  SING  N  N  52  
VXY  C34  H58  SING  N  N  53  
VXY  C34  H57  SING  N  N  54  
VXY  C15  H42  SING  N  N  55  
VXY  C15  H41  SING  N  N  56  
VXY  C24  H50  SING  N  N  57  
VXY  C24  H51  SING  N  N  58  
VXY  C25  H52  SING  N  N  59  
VXY  N1   H37  SING  N  N  60  
VXY  N1   H36  SING  N  N  61  
VXY  N13  H40  SING  N  N  62  
VXY  O16  H43  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VXY  SMILES            ACDLabs               12.01  "c1c(cnc(n1)N)c3c(c(nc(N2CCOCC2)n3)NC4(CCN(C(OCC(F)F)=O)C4)CO)F"  
VXY  InChI             InChI                 1.03   "InChI=1S/C20H25F3N8O4/c21-13(22)9-35-19(33)31-2-1-20(10-31,11-32)29-16-14(23)15(12-7-25-17(24)26-8-12)27-18(28-16)30-3-5-34-6-4-30/h7-8,13,32H,1-6,9-11H2,(H2,24,25,26)(H,27,28,29)/t20-/m0/s1"  
VXY  InChIKey          InChI                 1.03   RTOREZYNLPQUKM-FQEVSTJZSA-N  
VXY  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncc(cn1)c2nc(nc(N[C@@]3(CO)CCN(C3)C(=O)OCC(F)F)c2F)N4CCOCC4"  
VXY  SMILES            CACTVS                3.385  "Nc1ncc(cn1)c2nc(nc(N[C]3(CO)CCN(C3)C(=O)OCC(F)F)c2F)N4CCOCC4"  
VXY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(cnc(n1)N)c2c(c(nc(n2)N3CCOCC3)N[C@]4(CCN(C4)C(=O)OCC(F)F)CO)F"  
VXY  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(cnc(n1)N)c2c(c(nc(n2)N3CCOCC3)NC4(CCN(C4)C(=O)OCC(F)F)CO)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VXY  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,2-difluoroethyl (3S)-3-{[2'-amino-5-fluoro-2-(morpholin-4-yl)[4,5'-bipyrimidin]-6-yl]amino}-3-(hydroxymethyl)pyrrolidine-1-carboxylate"  
VXY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2,2-bis(fluoranyl)ethyl (3~{S})-3-[[6-(2-azanylpyrimidin-5-yl)-5-fluoranyl-2-morpholin-4-yl-pyrimidin-4-yl]amino]-3-(hydroxymethyl)pyrrolidine-1-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VXY  "Create component"  2020-09-21  RCSB  
VXY  "Initial release"   2021-01-06  RCSB  
##
