data_VPY
#

_chem_comp.id                                   VPY
_chem_comp.name                                 "S-[(2R)-2,3-dihydroxypropyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenethioate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H38 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-02
_chem_comp.pdbx_modified_date                   2021-03-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       394.611
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VPY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JZ5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VPY  S01  S1   S  0  1  N  N  N  -11.498   6.233   4.299    6.358   0.049  -0.631  S01  VPY   1  
VPY  O01  O1   O  0  1  N  N  N   -9.341   8.321   4.581    9.330   0.679  -0.733  O01  VPY   2  
VPY  O02  O2   O  0  1  N  N  N  -10.955   5.386   6.720    5.055   0.119   1.555  O02  VPY   3  
VPY  O03  O3   O  0  1  N  N  N   -6.727   7.953   4.773   10.292   3.349  -0.281  O03  VPY   4  
VPY  C01  C1   C  0  1  N  N  N  -19.152   9.116  10.848   -8.570   2.236   0.075  C01  VPY   5  
VPY  C02  C2   C  0  1  N  N  N  -17.885   8.360  10.465   -9.658   1.552   0.904  C02  VPY   6  
VPY  C03  C3   C  0  1  N  N  N  -20.343   8.317  10.293   -7.996   1.240  -0.935  C03  VPY   7  
VPY  C04  C4   C  0  1  N  N  N  -16.639   8.938  11.117  -10.231   2.548   1.914  C04  VPY   8  
VPY  C05  C5   C  0  1  N  N  N  -13.508   7.045   7.168    3.054  -1.579   1.169  C05  VPY   9  
VPY  C06  C6   C  0  1  N  N  N  -20.726   7.135  11.208   -6.924   1.914  -1.752  C06  VPY  10  
VPY  C07  C7   C  0  1  N  N  N  -15.605   7.818  11.263  -11.319   1.863   2.744  C07  VPY  11  
VPY  C08  C8   C  0  1  N  N  N  -15.008   7.235   7.459    1.989  -2.591   0.741  C08  VPY  12  
VPY  C09  C9   C  0  1  N  N  N  -13.293   5.746   6.392    4.052  -1.376   0.028  C09  VPY  13  
VPY  C10  C10  C  0  1  N  N  N  -21.362   6.034  10.802   -5.752   1.347  -1.891  C10  VPY  14  
VPY  C11  C11  C  0  1  N  N  N  -15.763   7.406   6.148    1.006  -2.792   1.866  C11  VPY  15  
VPY  C12  C12  C  0  1  N  N  N  -21.806   5.785   9.359   -5.532  -0.060  -1.396  C12  VPY  16  
VPY  C13  C13  C  0  1  N  N  R   -8.921   7.001   4.841    8.470   1.765  -0.383  C13  VPY  17  
VPY  C14  C14  C  0  1  N  N  N  -11.838   5.713   5.987    5.101  -0.379   0.450  C14  VPY  18  
VPY  C15  C15  C  0  1  N  N  N   -9.730   6.051   3.987    7.266   1.231   0.396  C15  VPY  19  
VPY  C16  C16  C  0  1  N  N  N  -16.935   6.859   5.877   -0.278  -2.647   1.647  C16  VPY  20  
VPY  C17  C17  C  0  1  N  N  N  -17.750   5.984   6.831   -0.785  -2.454   0.242  C17  VPY  21  
VPY  C18  C18  C  0  1  N  N  N   -7.451   6.790   4.475    9.237   2.764   0.486  C18  VPY  22  
VPY  C19  C19  C  0  1  N  N  N  -21.640   4.293   9.035   -4.903  -0.884  -2.489  C19  VPY  23  
VPY  C20  C20  C  0  1  N  N  N  -20.517   4.629   6.775   -3.254  -1.635  -0.852  C20  VPY  24  
VPY  C21  C21  C  0  1  N  N  N  -18.054   4.622   6.191   -1.859  -3.470  -0.049  C21  VPY  25  
VPY  C22  C22  C  0  1  N  N  N  -21.079   3.790   7.933   -3.800  -1.550  -2.254  C22  VPY  26  
VPY  C23  C23  C  0  1  N  N  N  -19.246   4.037   6.178   -3.030  -3.079  -0.486  C23  VPY  27  
VPY  H37  H1   H  0  1  N  N  N   -8.837   8.925   5.114    9.676   0.190   0.026  H37  VPY  28  
VPY  H38  H2   H  0  1  N  N  N   -5.813   7.825   4.547   10.822   3.994   0.208  H38  VPY  29  
VPY  H01  H3   H  0  1  N  N  N  -19.137  10.124  10.408   -8.998   3.086  -0.456  H01  VPY  30  
VPY  H02  H4   H  0  1  N  N  N  -19.228   9.194  11.943   -7.774   2.584   0.734  H02  VPY  31  
VPY  H04  H5   H  0  1  N  N  N  -17.992   7.311  10.779  -10.453   1.204   0.245  H04  VPY  32  
VPY  H03  H6   H  0  1  N  N  N  -17.764   8.406   9.373   -9.229   0.702   1.436  H03  VPY  33  
VPY  H06  H7   H  0  1  N  N  N  -21.209   8.989  10.201   -7.567   0.391  -0.404  H06  VPY  34  
VPY  H05  H8   H  0  1  N  N  N  -20.076   7.925   9.301   -8.791   0.893  -1.595  H05  VPY  35  
VPY  H08  H9   H  0  1  N  N  N  -16.229   9.742  10.488   -9.436   2.895   2.574  H08  VPY  36  
VPY  H07  H10  H  0  1  N  N  N  -16.892   9.341  12.109  -10.660   3.398   1.383  H07  VPY  37  
VPY  H10  H11  H  0  1  N  N  N  -12.954   6.999   8.117    2.577  -0.629   1.409  H10  VPY  38  
VPY  H09  H12  H  0  1  N  N  N  -13.141   7.893   6.570    3.579  -1.954   2.048  H09  VPY  39  
VPY  H11  H13  H  0  1  N  N  N  -20.460   7.204  12.253   -7.123   2.866  -2.224  H11  VPY  40  
VPY  H14  H14  H  0  1  N  N  N  -14.695   8.218  11.734  -11.728   2.573   3.463  H14  VPY  41  
VPY  H16  H15  H  0  1  N  N  N  -16.020   7.015  11.890  -12.115   1.516   2.085  H16  VPY  42  
VPY  H15  H16  H  0  1  N  N  N  -15.358   7.416  10.270  -10.891   1.014   3.275  H15  VPY  43  
VPY  H12  H17  H  0  1  N  N  N  -15.150   8.130   8.083    1.464  -2.216  -0.138  H12  VPY  44  
VPY  H13  H18  H  0  1  N  N  N  -15.393   6.352   7.991    2.466  -3.541   0.502  H13  VPY  45  
VPY  H17  H19  H  0  1  N  N  N  -13.935   5.728   5.499    4.529  -2.326  -0.212  H17  VPY  46  
VPY  H18  H20  H  0  1  N  N  N  -13.528   4.881   7.030    3.528  -1.001  -0.851  H18  VPY  47  
VPY  H19  H21  H  0  1  N  N  N  -21.576   5.272  11.537   -4.943   1.887  -2.360  H19  VPY  48  
VPY  H20  H22  H  0  1  N  N  N  -15.308   8.019   5.384    1.360  -3.055   2.852  H20  VPY  49  
VPY  H22  H23  H  0  1  N  N  N  -21.186   6.382   8.674   -4.872  -0.041  -0.529  H22  VPY  50  
VPY  H23  H24  H  0  1  N  N  N  -22.861   6.072   9.243   -6.489  -0.499  -1.114  H23  VPY  51  
VPY  H21  H25  H  0  1  N  N  N   -9.066   6.748   5.902    8.124   2.262  -1.289  H21  VPY  52  
VPY  H25  H26  H  0  1  N  N  N   -9.430   5.018   4.217    6.610   2.059   0.664  H25  VPY  53  
VPY  H24  H27  H  0  1  N  N  N   -9.530   6.263   2.926    7.612   0.734   1.303  H24  VPY  54  
VPY  H26  H28  H  0  1  N  N  N  -17.353   7.046   4.899   -0.972  -2.667   2.474  H26  VPY  55  
VPY  H28  H29  H  0  1  N  N  N  -17.177   5.828   7.757   -1.198  -1.450   0.139  H28  VPY  56  
VPY  H27  H30  H  0  1  N  N  N  -18.697   6.492   7.067    0.037  -2.582  -0.463  H27  VPY  57  
VPY  H29  H31  H  0  1  N  N  N   -7.368   6.571   3.400    9.658   2.247   1.348  H29  VPY  58  
VPY  H30  H32  H  0  1  N  N  N   -7.046   5.947   5.054    8.559   3.546   0.826  H30  VPY  59  
VPY  H31  H33  H  0  1  N  N  N  -22.010   3.587   9.764   -5.362  -0.927  -3.466  H31  VPY  60  
VPY  H33  H34  H  0  1  N  N  N  -20.292   5.639   7.150   -2.309  -1.095  -0.797  H33  VPY  61  
VPY  H32  H35  H  0  1  N  N  N  -21.280   4.693   5.985   -3.967  -1.190  -0.158  H32  VPY  62  
VPY  H34  H36  H  0  1  N  N  N  -17.237   4.100   5.715   -1.663  -4.522   0.103  H34  VPY  63  
VPY  H35  H37  H  0  1  N  N  N  -21.016   2.715   7.849   -3.281  -2.039  -3.066  H35  VPY  64  
VPY  H36  H38  H  0  1  N  N  N  -19.320   3.067   5.708   -3.836  -3.793  -0.585  H36  VPY  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VPY  C15  S01  SING  N  N   1  
VPY  C15  C13  SING  N  N   2  
VPY  S01  C14  SING  N  N   3  
VPY  C18  O03  SING  N  N   4  
VPY  C18  C13  SING  N  N   5  
VPY  O01  C13  SING  N  N   6  
VPY  C16  C11  DOUB  N  Z   7  
VPY  C16  C17  SING  N  N   8  
VPY  C14  C09  SING  N  N   9  
VPY  C14  O02  DOUB  N  N  10  
VPY  C11  C08  SING  N  N  11  
VPY  C23  C21  DOUB  N  Z  12  
VPY  C23  C20  SING  N  N  13  
VPY  C21  C17  SING  N  N  14  
VPY  C09  C05  SING  N  N  15  
VPY  C20  C22  SING  N  N  16  
VPY  C05  C08  SING  N  N  17  
VPY  C22  C19  DOUB  N  Z  18  
VPY  C19  C12  SING  N  N  19  
VPY  C12  C10  SING  N  N  20  
VPY  C03  C01  SING  N  N  21  
VPY  C03  C06  SING  N  N  22  
VPY  C02  C01  SING  N  N  23  
VPY  C02  C04  SING  N  N  24  
VPY  C10  C06  DOUB  N  Z  25  
VPY  C04  C07  SING  N  N  26  
VPY  O01  H37  SING  N  N  27  
VPY  O03  H38  SING  N  N  28  
VPY  C01  H01  SING  N  N  29  
VPY  C01  H02  SING  N  N  30  
VPY  C02  H04  SING  N  N  31  
VPY  C02  H03  SING  N  N  32  
VPY  C03  H06  SING  N  N  33  
VPY  C03  H05  SING  N  N  34  
VPY  C04  H08  SING  N  N  35  
VPY  C04  H07  SING  N  N  36  
VPY  C05  H10  SING  N  N  37  
VPY  C05  H09  SING  N  N  38  
VPY  C06  H11  SING  N  N  39  
VPY  C07  H14  SING  N  N  40  
VPY  C07  H16  SING  N  N  41  
VPY  C07  H15  SING  N  N  42  
VPY  C08  H12  SING  N  N  43  
VPY  C08  H13  SING  N  N  44  
VPY  C09  H17  SING  N  N  45  
VPY  C09  H18  SING  N  N  46  
VPY  C10  H19  SING  N  N  47  
VPY  C11  H20  SING  N  N  48  
VPY  C12  H22  SING  N  N  49  
VPY  C12  H23  SING  N  N  50  
VPY  C13  H21  SING  N  N  51  
VPY  C15  H25  SING  N  N  52  
VPY  C15  H24  SING  N  N  53  
VPY  C16  H26  SING  N  N  54  
VPY  C17  H28  SING  N  N  55  
VPY  C17  H27  SING  N  N  56  
VPY  C18  H29  SING  N  N  57  
VPY  C18  H30  SING  N  N  58  
VPY  C19  H31  SING  N  N  59  
VPY  C20  H33  SING  N  N  60  
VPY  C20  H32  SING  N  N  61  
VPY  C21  H34  SING  N  N  62  
VPY  C22  H35  SING  N  N  63  
VPY  C23  H36  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VPY  SMILES            ACDLabs               12.01  "S(C(=O)CCC[C@H]=CC[C@H]=CCC=[C@H]C[C@H]=[C@H]CCCCC)CC(O)CO"  
VPY  InChI             InChI                 1.03   "InChI=1S/C23H38O3S/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-23(26)27-21-22(25)20-24/h6-7,9-10,12-13,15-16,22,24-25H,2-5,8,11,14,17-21H2,1H3/b7-6-,10-9-,13-12-,16-15-/t22-/m1/s1"  
VPY  InChIKey          InChI                 1.03   UUOPRYPOAXYNLX-NZRYSPDRSA-N  
VPY  SMILES_CANONICAL  CACTVS                3.385  "CCCCC\C=C/C\C=C/C/C=C\C\C=C/CCCC(=O)SC[C@H](O)CO"  
VPY  SMILES            CACTVS                3.385  "CCCCCC=CCC=CCC=CCC=CCCCC(=O)SC[CH](O)CO"  
VPY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)SC[C@@H](CO)O"  
VPY  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCC=CCC=CCC=CCC=CCCCC(=O)SCC(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VPY  "SYSTEMATIC NAME"  ACDLabs               12.01  "S-[(2R)-2,3-dihydroxypropyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenethioate"  
VPY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{S}-[(2~{R})-2,3-bis(oxidanyl)propyl] (5~{Z},8~{Z},11~{Z},14~{Z})-icosa-5,8,11,14-tetraenethioate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VPY  "Create component"  2020-09-02  RCSB  
VPY  "Initial release"   2021-03-10  RCSB  
##
