data_V4Y
#

_chem_comp.id                                   V4Y
_chem_comp.name                                 "7-{[3-({[3-(6-aminopyridin-2-yl)propyl]amino}methyl)phenoxy]methyl}quinolin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H27 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-26
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.515
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V4Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XK5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V4Y  C02  C1   C  0  1  Y  N  N  87.579   99.405  82.392   7.918   2.612   0.426  C02  V4Y   1  
V4Y  C03  C2   C  0  1  Y  N  N  86.387   98.841  82.011   9.235   2.232   0.666  C03  V4Y   2  
V4Y  C04  C3   C  0  1  Y  N  N  85.236   99.456  82.356   9.675   1.003   0.210  C04  V4Y   3  
V4Y  C05  C4   C  0  1  Y  N  N  85.273  100.653  83.096   8.779   0.191  -0.474  C05  V4Y   4  
V4Y  C06  C5   C  0  1  Y  N  N  86.468  101.192  83.474   7.487   0.631  -0.677  C06  V4Y   5  
V4Y  C07  C6   C  0  1  N  N  N  86.339  102.477  84.295   6.510  -0.246  -1.417  C07  V4Y   6  
V4Y  C08  C7   C  0  1  N  N  N  87.484  103.543  84.216   5.265  -0.463  -0.556  C08  V4Y   7  
V4Y  C09  C8   C  0  1  N  N  N  87.720  104.237  85.496   4.273  -1.354  -1.308  C09  V4Y   8  
V4Y  C11  C9   C  0  1  N  N  N  89.523  105.546  86.368   2.101  -2.414  -1.172  C11  V4Y   9  
V4Y  C12  C10  C  0  1  Y  N  N  89.464  106.606  85.302   0.890  -2.605  -0.295  C12  V4Y  10  
V4Y  C13  C11  C  0  1  Y  N  N  90.300  106.556  84.164   0.842  -3.660   0.596  C13  V4Y  11  
V4Y  C14  C12  C  0  1  Y  N  N  90.206  107.561  83.160  -0.265  -3.835   1.406  C14  V4Y  12  
V4Y  C15  C13  C  0  1  Y  N  N  89.302  108.584  83.298  -1.326  -2.954   1.326  C15  V4Y  13  
V4Y  C16  C14  C  0  1  Y  N  N  88.444  108.633  84.440  -1.280  -1.894   0.433  C16  V4Y  14  
V4Y  C18  C15  C  0  1  N  N  N  86.553  109.906  83.566  -3.434  -1.265   1.219  C18  V4Y  15  
V4Y  C19  C16  C  0  1  Y  N  N  85.510  110.951  84.060  -4.485  -0.210   0.990  C19  V4Y  16  
V4Y  C20  C17  C  0  1  Y  N  N  85.077  111.974  83.201  -4.447   0.968   1.733  C20  V4Y  17  
V4Y  C21  C18  C  0  1  Y  N  N  84.128  112.915  83.618  -5.383   1.941   1.550  C21  V4Y  18  
V4Y  C22  C19  C  0  1  Y  N  N  83.603  112.804  84.961  -6.399   1.755   0.600  C22  V4Y  19  
V4Y  C23  C20  C  0  1  Y  N  N  82.635  113.774  85.399  -7.385   2.740   0.382  C23  V4Y  20  
V4Y  C24  C21  C  0  1  Y  N  N  82.103  113.669  86.685  -8.343   2.497  -0.555  C24  V4Y  21  
V4Y  C25  C22  C  0  1  Y  N  N  82.523  112.611  87.516  -8.330   1.292  -1.273  C25  V4Y  22  
V4Y  C28  C23  C  0  1  Y  N  N  83.999  111.787  85.789  -6.440   0.559  -0.157  C28  V4Y  23  
V4Y  C29  C24  C  0  1  Y  N  N  84.979  110.841  85.366  -5.454  -0.419   0.058  C29  V4Y  24  
V4Y  C30  C25  C  0  1  Y  N  N  88.555  107.631  85.437  -0.169  -1.721  -0.379  C30  V4Y  25  
V4Y  N01  N1   N  0  1  N  N  N  88.703   98.697  81.984   7.465   3.847   0.874  N01  V4Y  26  
V4Y  N10  N2   N  0  1  N  N  N  89.112  104.307  85.752   3.077  -1.562  -0.481  N10  V4Y  27  
V4Y  N26  N3   N  0  1  N  N  N  81.961  112.479  88.830  -9.312   1.059  -2.223  N26  V4Y  28  
V4Y  N27  N4   N  0  1  Y  N  N  83.447  111.711  87.085  -7.406   0.376  -1.064  N27  V4Y  29  
V4Y  N31  N5   N  0  1  Y  N  N  87.604  100.573  83.110   7.095   1.809  -0.229  N31  V4Y  30  
V4Y  O17  O1   O  0  1  N  N  N  87.471  109.682  84.652  -2.323  -1.026   0.353  O17  V4Y  31  
V4Y  H1   H1   H  0  1  N  N  N  86.370   97.921  81.445   9.905   2.889   1.201  H1   V4Y  32  
V4Y  H2   H2   H  0  1  N  N  N  84.287   99.030  82.065  10.692   0.682   0.381  H2   V4Y  33  
V4Y  H3   H3   H  0  1  N  N  N  84.351  101.147  83.366   9.091  -0.775  -0.844  H3   V4Y  34  
V4Y  H4   H4   H  0  1  N  N  N  85.412  102.974  83.973   6.226   0.236  -2.352  H4   V4Y  35  
V4Y  H5   H5   H  0  1  N  N  N  86.248  102.179  85.350   6.976  -1.208  -1.631  H5   V4Y  36  
V4Y  H6   H6   H  0  1  N  N  N  88.413  103.037  83.916   5.549  -0.945   0.380  H6   V4Y  37  
V4Y  H7   H7   H  0  1  N  N  N  87.213  104.292  83.457   4.799   0.499  -0.342  H7   V4Y  38  
V4Y  H8   H8   H  0  1  N  N  N  87.307  105.255  85.442   3.989  -0.871  -2.243  H8   V4Y  39  
V4Y  H9   H9   H  0  1  N  N  N  87.226  103.684  86.308   4.739  -2.316  -1.522  H9   V4Y  40  
V4Y  H10  H10  H  0  1  N  N  N  90.549  105.454  86.754   2.551  -3.383  -1.385  H10  V4Y  41  
V4Y  H11  H11  H  0  1  N  N  N  88.843  105.802  87.194   1.801  -1.939  -2.107  H11  V4Y  42  
V4Y  H12  H12  H  0  1  N  N  N  91.013  105.752  84.055   1.671  -4.350   0.659  H12  V4Y  43  
V4Y  H13  H13  H  0  1  N  N  N  90.845  107.518  82.291  -0.300  -4.660   2.102  H13  V4Y  44  
V4Y  H14  H14  H  0  1  N  N  N  89.239  109.353  82.543  -2.191  -3.091   1.959  H14  V4Y  45  
V4Y  H15  H15  H  0  1  N  N  N  86.048  108.966  83.298  -3.101  -1.228   2.256  H15  V4Y  46  
V4Y  H16  H16  H  0  1  N  N  N  87.092  110.295  82.690  -3.855  -2.248   1.007  H16  V4Y  47  
V4Y  H17  H17  H  0  1  N  N  N  85.483  112.036  82.202  -3.665   1.112   2.465  H17  V4Y  48  
V4Y  H18  H18  H  0  1  N  N  N  83.797  113.701  82.956  -5.343   2.849   2.132  H18  V4Y  49  
V4Y  H19  H19  H  0  1  N  N  N  82.324  114.573  84.742  -7.380   3.662   0.944  H19  V4Y  50  
V4Y  H20  H20  H  0  1  N  N  N  81.379  114.389  87.038  -9.112   3.231  -0.745  H20  V4Y  51  
V4Y  H21  H21  H  0  1  N  N  N  85.309  110.056  86.030  -5.468  -1.336  -0.513  H21  V4Y  52  
V4Y  H22  H22  H  0  1  N  N  N  87.921  107.672  86.310  -0.129  -0.894  -1.072  H22  V4Y  53  
V4Y  H23  H23  H  0  1  N  N  N  89.527   99.171  82.295   6.549   4.117   0.706  H23  V4Y  54  
V4Y  H24  H24  H  0  1  N  N  N  88.679   97.778  82.377   8.064   4.438   1.355  H24  V4Y  55  
V4Y  H25  H25  H  0  1  N  N  N  89.360  103.553  86.361   3.322  -1.948   0.418  H25  V4Y  56  
V4Y  H27  H27  H  0  1  N  N  N  82.357  111.681  89.284  -9.998   1.726  -2.386  H27  V4Y  57  
V4Y  H28  H28  H  0  1  N  N  N  82.164  113.300  89.363  -9.313   0.229  -2.726  H28  V4Y  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V4Y  N01  C02  SING  N  N   1  
V4Y  C03  C04  DOUB  Y  N   2  
V4Y  C03  C02  SING  Y  N   3  
V4Y  C04  C05  SING  Y  N   4  
V4Y  C02  N31  DOUB  Y  N   5  
V4Y  C05  C06  DOUB  Y  N   6  
V4Y  N31  C06  SING  Y  N   7  
V4Y  C14  C15  DOUB  Y  N   8  
V4Y  C14  C13  SING  Y  N   9  
V4Y  C20  C21  DOUB  Y  N  10  
V4Y  C20  C19  SING  Y  N  11  
V4Y  C15  C16  SING  Y  N  12  
V4Y  C06  C07  SING  N  N  13  
V4Y  C18  C19  SING  N  N  14  
V4Y  C18  O17  SING  N  N  15  
V4Y  C21  C22  SING  Y  N  16  
V4Y  C19  C29  DOUB  Y  N  17  
V4Y  C13  C12  DOUB  Y  N  18  
V4Y  C08  C07  SING  N  N  19  
V4Y  C08  C09  SING  N  N  20  
V4Y  C16  O17  SING  N  N  21  
V4Y  C16  C30  DOUB  Y  N  22  
V4Y  C22  C23  DOUB  Y  N  23  
V4Y  C22  C28  SING  Y  N  24  
V4Y  C12  C30  SING  Y  N  25  
V4Y  C12  C11  SING  N  N  26  
V4Y  C29  C28  SING  Y  N  27  
V4Y  C23  C24  SING  Y  N  28  
V4Y  C09  N10  SING  N  N  29  
V4Y  N10  C11  SING  N  N  30  
V4Y  C28  N27  DOUB  Y  N  31  
V4Y  C24  C25  DOUB  Y  N  32  
V4Y  N27  C25  SING  Y  N  33  
V4Y  C25  N26  SING  N  N  34  
V4Y  C03  H1   SING  N  N  35  
V4Y  C04  H2   SING  N  N  36  
V4Y  C05  H3   SING  N  N  37  
V4Y  C07  H4   SING  N  N  38  
V4Y  C07  H5   SING  N  N  39  
V4Y  C08  H6   SING  N  N  40  
V4Y  C08  H7   SING  N  N  41  
V4Y  C09  H8   SING  N  N  42  
V4Y  C09  H9   SING  N  N  43  
V4Y  C11  H10  SING  N  N  44  
V4Y  C11  H11  SING  N  N  45  
V4Y  C13  H12  SING  N  N  46  
V4Y  C14  H13  SING  N  N  47  
V4Y  C15  H14  SING  N  N  48  
V4Y  C18  H15  SING  N  N  49  
V4Y  C18  H16  SING  N  N  50  
V4Y  C20  H17  SING  N  N  51  
V4Y  C21  H18  SING  N  N  52  
V4Y  C23  H19  SING  N  N  53  
V4Y  C24  H20  SING  N  N  54  
V4Y  C29  H21  SING  N  N  55  
V4Y  C30  H22  SING  N  N  56  
V4Y  N01  H23  SING  N  N  57  
V4Y  N01  H24  SING  N  N  58  
V4Y  N10  H25  SING  N  N  59  
V4Y  N26  H27  SING  N  N  60  
V4Y  N26  H28  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V4Y  SMILES            ACDLabs               12.01  "c1(nc(ccc1)CCCNCc2cc(ccc2)OCc3cc4c(cc3)ccc(N)n4)N"  
V4Y  InChI             InChI                 1.03   "InChI=1S/C25H27N5O/c26-24-8-2-5-21(29-24)6-3-13-28-16-18-4-1-7-22(14-18)31-17-19-9-10-20-11-12-25(27)30-23(20)15-19/h1-2,4-5,7-12,14-15,28H,3,6,13,16-17H2,(H2,26,29)(H2,27,30)"  
V4Y  InChIKey          InChI                 1.03   YWEAUSOYABUBID-UHFFFAOYSA-N  
V4Y  SMILES_CANONICAL  CACTVS                3.385  "Nc1cccc(CCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1"  
V4Y  SMILES            CACTVS                3.385  "Nc1cccc(CCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1"  
V4Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCc4cccc(n4)N"  
V4Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCc4cccc(n4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V4Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-{[3-({[3-(6-aminopyridin-2-yl)propyl]amino}methyl)phenoxy]methyl}quinolin-2-amine"  
V4Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "7-[[3-[[3-(6-azanylpyridin-2-yl)propylamino]methyl]phenoxy]methyl]quinolin-2-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V4Y  "Create component"  2020-06-26  RCSB  
V4Y  "Initial release"   2021-06-30  RCSB  
##
