data_V0Y
#

_chem_comp.id                                   V0Y
_chem_comp.name                                 "4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H23 F2 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-11
_chem_comp.pdbx_modified_date                   2020-10-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       451.469
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V0Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W4K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V0Y  N15  N1   N  0  1  N  N  N  -68.898  -31.849  -39.264  -3.368  -5.662  -0.096  N15  V0Y   1  
V0Y  C14  C1   C  0  1  N  N  N  -68.473  -32.572  -38.437  -2.718  -4.730  -0.094  C14  V0Y   2  
V0Y  C10  C2   C  0  1  Y  N  N  -67.977  -33.497  -37.654  -1.899  -3.556  -0.092  C10  V0Y   3  
V0Y  C11  C3   C  0  1  Y  N  N  -68.812  -34.561  -37.347  -2.189  -2.501   0.782  C11  V0Y   4  
V0Y  F13  F1   F  0  1  N  N  N  -70.065  -34.426  -37.834  -3.241  -2.591   1.624  F13  V0Y   5  
V0Y  C12  C4   C  0  1  Y  N  N  -68.412  -35.622  -36.526  -1.398  -1.371   0.782  C12  V0Y   6  
V0Y  C9   C5   C  0  1  Y  N  N  -66.657  -33.492  -37.206  -0.806  -3.464  -0.958  C9   V0Y   7  
V0Y  C8   C6   C  0  1  Y  N  N  -66.219  -34.569  -36.438  -0.018  -2.336  -0.956  C8   V0Y   8  
V0Y  C7   C7   C  0  1  Y  N  N  -67.085  -35.615  -36.057  -0.310  -1.280  -0.088  C7   V0Y   9  
V0Y  C6   C8   C  0  1  N  N  N  -66.390  -36.679  -35.253   0.538  -0.068  -0.088  C6   V0Y  10  
V0Y  C5   C9   C  0  1  N  N  N  -66.602  -38.108  -35.424  -0.048   1.201  -0.140  C5   V0Y  11  
V0Y  C16  C10  C  0  1  Y  N  N  -67.646  -38.728  -36.365  -1.519   1.355  -0.197  C16  V0Y  12  
V0Y  C17  C11  C  0  1  Y  N  N  -68.811  -39.426  -36.030  -2.204   1.929   0.876  C17  V0Y  13  
V0Y  C18  C12  C  0  1  Y  N  N  -69.735  -39.893  -37.000  -3.576   2.071   0.818  C18  V0Y  14  
V0Y  F22  F2   F  0  1  N  N  N  -70.875  -40.563  -36.645  -4.241   2.627   1.855  F22  V0Y  15  
V0Y  C19  C13  C  0  1  Y  N  N  -69.468  -39.632  -38.330  -4.274   1.643  -0.305  C19  V0Y  16  
V0Y  O23  O1   O  0  1  N  N  N  -70.221  -39.989  -39.396  -5.625   1.785  -0.359  O23  V0Y  17  
V0Y  C24  C14  C  0  1  N  N  N  -70.707  -41.326  -39.345  -6.279   1.324  -1.543  C24  V0Y  18  
V0Y  C20  C15  C  0  1  Y  N  N  -68.345  -38.991  -38.661  -3.595   1.072  -1.372  C20  V0Y  19  
V0Y  C21  C16  C  0  1  Y  N  N  -67.458  -38.554  -37.707  -2.224   0.931  -1.324  C21  V0Y  20  
V0Y  C4   C17  C  0  1  N  N  N  -65.803  -38.929  -34.663   0.800   2.335  -0.138  C4   V0Y  21  
V0Y  O25  O2   O  0  1  N  N  N  -65.968  -40.167  -34.713   0.333   3.461  -0.182  O25  V0Y  22  
V0Y  N1   N2   N  0  1  N  N  N  -65.432  -36.156  -34.423   1.871  -0.178  -0.031  N1   V0Y  23  
V0Y  C2   C18  C  0  1  N  N  N  -64.674  -36.976  -33.651   2.647   0.885  -0.029  C2   V0Y  24  
V0Y  N3   N3   N  0  1  N  N  N  -64.831  -38.368  -33.809   2.135   2.145  -0.085  N3   V0Y  25  
V0Y  C26  C19  C  0  1  N  N  N  -63.987  -39.236  -32.995   3.037   3.299  -0.081  C26  V0Y  26  
V0Y  N27  N4   N  0  1  N  N  N  -63.653  -36.557  -32.732   4.005   0.719   0.030  N27  V0Y  27  
V0Y  C28  C20  C  0  1  N  N  N  -63.693  -36.929  -31.372   4.685   0.567   1.323  C28  V0Y  28  
V0Y  C29  C21  C  0  1  N  N  N  -62.282  -36.991  -30.796   5.530  -0.711   1.289  C29  V0Y  29  
V0Y  C30  C22  C  0  1  N  N  N  -61.515  -35.689  -30.982   6.473  -0.661   0.085  C30  V0Y  30  
V0Y  N33  N5   N  0  1  N  N  N  -60.196  -35.814  -30.766   7.308  -1.870   0.068  N33  V0Y  31  
V0Y  C31  C23  C  0  1  N  N  N  -61.753  -35.123  -32.361   5.653  -0.590  -1.205  C31  V0Y  32  
V0Y  C32  C24  C  0  1  N  N  N  -63.196  -35.251  -32.852   4.809   0.683  -1.200  C32  V0Y  33  
V0Y  H1   H1   H  0  1  N  N  N  -69.096  -36.416  -36.263  -1.620  -0.556   1.455  H1   V0Y  34  
V0Y  H2   H2   H  0  1  N  N  N  -65.992  -32.676  -37.447  -0.579  -4.279  -1.630  H2   V0Y  35  
V0Y  H3   H3   H  0  1  N  N  N  -65.186  -34.604  -36.125   0.827  -2.266  -1.625  H3   V0Y  36  
V0Y  H4   H4   H  0  1  N  N  N  -69.016  -39.618  -34.987  -1.662   2.262   1.748  H4   V0Y  37  
V0Y  H5   H5   H  0  1  N  N  N  -71.306  -41.534  -40.244  -7.352   1.495  -1.455  H5   V0Y  38  
V0Y  H6   H6   H  0  1  N  N  N  -69.857  -42.023  -39.302  -5.894   1.866  -2.406  H6   V0Y  39  
V0Y  H7   H7   H  0  1  N  N  N  -71.333  -41.455  -38.450  -6.091   0.257  -1.670  H7   V0Y  40  
V0Y  H8   H8   H  0  1  N  N  N  -68.128  -38.812  -39.704  -4.141   0.741  -2.243  H8   V0Y  41  
V0Y  H9   H9   H  0  1  N  N  N  -66.564  -38.045  -38.036  -1.696   0.487  -2.155  H9   V0Y  42  
V0Y  H10  H10  H  0  1  N  N  N  -63.296  -38.622  -32.399   2.458   4.213  -0.214  H10  V0Y  43  
V0Y  H11  H11  H  0  1  N  N  N  -64.618  -39.835  -32.322   3.570   3.341   0.868  H11  V0Y  44  
V0Y  H12  H12  H  0  1  N  N  N  -63.411  -39.906  -33.650   3.754   3.203  -0.896  H12  V0Y  45  
V0Y  H13  H13  H  0  1  N  N  N  -64.281  -36.188  -30.811   5.331   1.427   1.500  H13  V0Y  46  
V0Y  H14  H14  H  0  1  N  N  N  -64.166  -37.918  -31.281   3.944   0.494   2.119  H14  V0Y  47  
V0Y  H15  H15  H  0  1  N  N  N  -62.350  -37.209  -29.720   6.115  -0.785   2.206  H15  V0Y  48  
V0Y  H16  H16  H  0  1  N  N  N  -61.731  -37.799  -31.300   4.875  -1.578   1.203  H16  V0Y  49  
V0Y  H17  H17  H  0  1  N  N  N  -61.932  -34.968  -30.263   7.111   0.220   0.159  H17  V0Y  50  
V0Y  H18  H18  H  0  1  N  N  N  -60.041  -36.189  -29.852   7.941  -1.861  -0.719  H18  V0Y  51  
V0Y  H19  H19  H  0  1  N  N  N  -59.803  -36.429  -31.449   7.812  -1.973   0.935  H19  V0Y  52  
V0Y  H21  H21  H  0  1  N  N  N  -61.100  -35.654  -33.069   6.325  -0.579  -2.064  H21  V0Y  53  
V0Y  H22  H22  H  0  1  N  N  N  -61.487  -34.056  -32.346   4.998  -1.459  -1.268  H22  V0Y  54  
V0Y  H23  H23  H  0  1  N  N  N  -63.243  -34.950  -33.909   4.150   0.687  -2.068  H23  V0Y  55  
V0Y  H24  H24  H  0  1  N  N  N  -63.839  -34.589  -32.253   5.465   1.553  -1.233  H24  V0Y  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V0Y  O23  C24  SING  N  N   1  
V0Y  O23  C19  SING  N  N   2  
V0Y  N15  C14  TRIP  N  N   3  
V0Y  C20  C19  DOUB  Y  N   4  
V0Y  C20  C21  SING  Y  N   5  
V0Y  C14  C10  SING  N  N   6  
V0Y  C19  C18  SING  Y  N   7  
V0Y  F13  C11  SING  N  N   8  
V0Y  C21  C16  DOUB  Y  N   9  
V0Y  C10  C11  DOUB  Y  N  10  
V0Y  C10  C9   SING  Y  N  11  
V0Y  C11  C12  SING  Y  N  12  
V0Y  C9   C8   DOUB  Y  N  13  
V0Y  C18  F22  SING  N  N  14  
V0Y  C18  C17  DOUB  Y  N  15  
V0Y  C12  C7   DOUB  Y  N  16  
V0Y  C8   C7   SING  Y  N  17  
V0Y  C16  C17  SING  Y  N  18  
V0Y  C16  C5   SING  N  N  19  
V0Y  C7   C6   SING  N  N  20  
V0Y  C5   C6   DOUB  N  N  21  
V0Y  C5   C4   SING  N  N  22  
V0Y  C6   N1   SING  N  N  23  
V0Y  O25  C4   DOUB  N  N  24  
V0Y  C4   N3   SING  N  N  25  
V0Y  N1   C2   DOUB  N  N  26  
V0Y  N3   C2   SING  N  N  27  
V0Y  N3   C26  SING  N  N  28  
V0Y  C2   N27  SING  N  N  29  
V0Y  C32  N27  SING  N  N  30  
V0Y  C32  C31  SING  N  N  31  
V0Y  N27  C28  SING  N  N  32  
V0Y  C31  C30  SING  N  N  33  
V0Y  C28  C29  SING  N  N  34  
V0Y  C30  C29  SING  N  N  35  
V0Y  C30  N33  SING  N  N  36  
V0Y  C12  H1   SING  N  N  37  
V0Y  C9   H2   SING  N  N  38  
V0Y  C8   H3   SING  N  N  39  
V0Y  C17  H4   SING  N  N  40  
V0Y  C24  H5   SING  N  N  41  
V0Y  C24  H6   SING  N  N  42  
V0Y  C24  H7   SING  N  N  43  
V0Y  C20  H8   SING  N  N  44  
V0Y  C21  H9   SING  N  N  45  
V0Y  C26  H10  SING  N  N  46  
V0Y  C26  H11  SING  N  N  47  
V0Y  C26  H12  SING  N  N  48  
V0Y  C28  H13  SING  N  N  49  
V0Y  C28  H14  SING  N  N  50  
V0Y  C29  H15  SING  N  N  51  
V0Y  C29  H16  SING  N  N  52  
V0Y  C30  H17  SING  N  N  53  
V0Y  N33  H18  SING  N  N  54  
V0Y  N33  H19  SING  N  N  55  
V0Y  C31  H21  SING  N  N  56  
V0Y  C31  H22  SING  N  N  57  
V0Y  C32  H23  SING  N  N  58  
V0Y  C32  H24  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V0Y  SMILES            ACDLabs               12.01  "N#Cc1c(cc(cc1)C=3N=C(N2CCC(N)CC2)N(C(C=3c4cc(F)c(OC)cc4)=O)C)F"  
V0Y  InChI             InChI                 1.03   "InChI=1S/C24H23F2N5O2/c1-30-23(32)21(14-5-6-20(33-2)19(26)11-14)22(15-3-4-16(13-27)18(25)12-15)29-24(30)31-9-7-17(28)8-10-31/h3-6,11-12,17H,7-10,28H2,1-2H3"  
V0Y  InChIKey          InChI                 1.03   NBAIXBAUHIQQGF-UHFFFAOYSA-N  
V0Y  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc(cc1F)C2=C(N=C(N(C)C2=O)N3CCC(N)CC3)c4ccc(C#N)c(F)c4"  
V0Y  SMILES            CACTVS                3.385  "COc1ccc(cc1F)C2=C(N=C(N(C)C2=O)N3CCC(N)CC3)c4ccc(C#N)c(F)c4"  
V0Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1C(=O)C(=C(N=C1N2CCC(CC2)N)c3ccc(c(c3)F)C#N)c4ccc(c(c4)F)OC"  
V0Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1C(=O)C(=C(N=C1N2CCC(CC2)N)c3ccc(c(c3)F)C#N)c4ccc(c(c4)F)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V0Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[2-(4-aminopiperidin-1-yl)-5-(3-fluoro-4-methoxyphenyl)-1-methyl-6-oxo-1,6-dihydropyrimidin-4-yl]-2-fluorobenzonitrile"  
V0Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-[2-(4-azanylpiperidin-1-yl)-5-(3-fluoranyl-4-methoxy-phenyl)-1-methyl-6-oxidanylidene-pyrimidin-4-yl]-2-fluoranyl-benzenecarbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V0Y  "Create component"  2020-06-11  RCSB  
V0Y  "Initial release"   2020-10-21  RCSB  
##
