data_U5Y
#

_chem_comp.id                                   U5Y
_chem_comp.name                                 "(12S,15S)-N-[(2-fluorophenyl)methyl]-10,13-dioxo-12-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}-2-oxa-11,14-diazatricyclo[15.2.2.1~3,7~]docosa-1(19),3(22),4,6,17,20-hexaene-15-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C39 H39 F N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-23
_chem_comp.pdbx_modified_date                   2021-04-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       662.749
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U5Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6WNK
_chem_comp.pdbx_subcomponent_list               "HCI M6J TYR U5V"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U5Y  C02  C10  C  0  1  N  N  N  -143.398  -93.254  36.649  -0.725   0.821  -1.840  C1     HCI   1  
U5Y  O01  O1   O  0  1  N  N  N  -144.575  -93.206  36.504  -0.170   1.513  -1.014  O1     HCI   2  
U5Y  C34  C25  C  0  1  N  N  N  -142.755  -93.801  37.920  -1.946   1.321  -2.569  C2     HCI   3  
U5Y  C35  C26  C  0  1  N  N  N  -142.076  -95.147  37.676  -1.981   2.851  -2.496  C3     HCI   4  
U5Y  C36  C27  C  0  1  Y  N  N  -143.120  -96.238  37.902  -2.824   3.274  -1.321  "C1'"  HCI   5  
U5Y  C37  C28  C  0  1  Y  N  N  -143.959  -96.614  36.863  -2.661   2.660  -0.094  "C2'"  HCI   6  
U5Y  C38  C29  C  0  1  Y  N  N  -144.921  -97.589  37.073  -3.442   3.047   0.984  "C3'"  HCI   7  
U5Y  C47  C37  C  0  1  Y  N  N  -145.030  -98.183  38.323  -4.389   4.054   0.822  "C4'"  HCI   8  
U5Y  C48  C38  C  0  1  Y  N  N  -144.192  -97.805  39.362  -4.544   4.668  -0.404  "C5'"  HCI   9  
U5Y  C49  C39  C  0  1  Y  N  N  -143.236  -96.826  39.152  -3.761   4.278  -1.474  "C6'"  HCI  10  
U5Y  C15  C3   C  0  1  N  N  N  -138.422  -89.062  35.085   5.522   2.126   1.551  C13    M6J  11  
U5Y  C09  C15  C  0  1  Y  N  N  -139.316  -89.721  32.770   6.010   0.377  -0.162  C15    M6J  12  
U5Y  C13  C2   C  0  1  Y  N  N  -139.856  -88.777  30.631   6.795   0.606  -2.413  C17    M6J  13  
U5Y  C10  C1   C  0  1  Y  N  N  -138.294  -90.449  32.188   6.962  -0.598   0.071  C20    M6J  14  
U5Y  C19  C20  C  0  1  N  N  N  -143.526  -93.300  33.349   0.529  -1.791  -0.289  C04    M6J  15  
U5Y  C04  C11  C  0  1  N  N  S  -143.179  -92.252  34.398   0.952  -0.829  -1.367  C06    M6J  16  
U5Y  C05  C12  C  0  1  N  N  N  -142.179  -91.274  33.788   1.592   0.407  -0.733  C07    M6J  17  
U5Y  C06  C13  C  0  1  N  N  N  -142.041  -89.942  34.510   2.962   0.054  -0.214  C08    M6J  18  
U5Y  C17  C4   C  0  1  N  N  N  -140.438  -87.916  35.434   3.329   2.398   0.607  C11    M6J  19  
U5Y  C16  C19  C  0  1  N  N  N  -139.080  -87.715  35.472   4.181   2.862   1.815  C12    M6J  20  
U5Y  C08  C14  C  0  1  N  N  R  -139.562  -89.858  34.283   5.065   0.785   0.938  C14    M6J  21  
U5Y  C14  C18  C  0  1  Y  N  N  -140.101  -88.883  31.990   5.928   0.981  -1.403  C16    M6J  22  
U5Y  C12  C17  C  0  1  Y  N  N  -138.833  -89.508  30.051   7.744  -0.373  -2.181  C18    M6J  23  
U5Y  C11  C16  C  0  1  Y  N  N  -138.049  -90.345  30.828   7.829  -0.972  -0.939  C19    M6J  24  
U5Y  N07  N2   N  0  1  N  N  N  -140.726  -89.344  34.686   3.717   0.993   0.389  N10    M6J  25  
U5Y  N03  N1   N  0  1  N  N  N  -142.551  -92.791  35.580  -0.253  -0.430  -2.135  N21    M6J  26  
U5Y  O33  O4   O  0  1  N  N  N  -142.935  -94.323  33.267  -0.179  -2.738  -0.558  O05    M6J  27  
U5Y  O18  O2   O  0  1  N  N  N  -143.011  -89.399  34.918   3.385  -1.076  -0.340  O09    M6J  28  
U5Y  N20  N3   N  0  1  N  N  N  -144.612  -92.987  32.429   0.948  -1.589   0.992  N      TYR  29  
U5Y  C21  C5   C  0  1  N  N  S  -144.975  -93.921  31.385   0.523  -2.601   1.980  CA     TYR  30  
U5Y  C22  C6   C  0  1  N  N  N  -144.857  -93.135  30.090  -0.648  -3.378   1.435  C      TYR  31  
U5Y  O32  O3   O  0  1  N  N  N  -145.334  -92.054  30.023  -0.762  -4.559   1.687  O      TYR  32  
U5Y  C44  C34  C  0  1  N  N  N  -146.387  -94.454  31.657   0.109  -1.888   3.268  CB     TYR  33  
U5Y  C43  C33  C  0  1  Y  N  N  -146.262  -95.387  32.860  -0.786  -0.722   2.941  CG     TYR  34  
U5Y  C42  C32  C  0  1  Y  N  N  -146.673  -94.985  34.122  -1.911  -0.908   2.161  CD1    TYR  35  
U5Y  C45  C35  C  0  1  Y  N  N  -145.685  -96.631  32.671  -0.475   0.538   3.420  CD2    TYR  36  
U5Y  C41  C31  C  0  1  Y  N  N  -146.538  -95.852  35.195  -2.741   0.176   1.888  CE1    TYR  37  
U5Y  C46  C36  C  0  1  Y  N  N  -145.540  -97.490  33.743  -1.294   1.627   3.142  CE2    TYR  38  
U5Y  C40  C30  C  0  1  Y  N  N  -145.951  -97.100  35.006  -2.447   1.436   2.392  CZ     TYR  39  
U5Y  O39  O5   O  0  1  N  N  N  -145.795  -98.014  36.058  -3.301   2.469   2.199  OH     TYR  40  
U5Y  C24  C7   C  0  1  N  N  N  -143.989  -92.937  27.739  -2.753  -3.493   0.213  C24    U5V  41  
U5Y  C26  C8   C  0  1  Y  N  N  -141.548  -92.259  27.760  -3.294  -2.349  -1.949  C26    U5V  42  
U5Y  C28  C9   C  0  1  Y  N  N  -140.241  -92.372  27.305  -4.091  -1.517  -2.717  C28    U5V  43  
U5Y  C25  C21  C  0  1  Y  N  N  -142.546  -93.061  27.227  -3.615  -2.582  -0.623  C25    U5V  44  
U5Y  C29  C22  C  0  1  Y  N  N  -139.932  -93.284  26.304  -5.202  -0.916  -2.158  C29    U5V  45  
U5Y  C30  C23  C  0  1  Y  N  N  -140.929  -94.088  25.773  -5.520  -1.146  -0.832  C30    U5V  46  
U5Y  C31  C24  C  0  1  Y  N  N  -142.235  -93.979  26.233  -4.728  -1.981  -0.066  C31    U5V  47  
U5Y  F27  F1   F  0  1  N  N  N  -141.861  -91.355  28.733  -2.207  -2.937  -2.494  F27    U5V  48  
U5Y  N23  N4   N  0  1  N  N  N  -144.127  -93.696  28.970  -1.568  -2.761   0.668  N23    U5V  49  
U5Y  H23  H23  H  0  1  N  N  N  -142.003  -93.082  38.277  -1.903   1.007  -3.612  H21    HCI  50  
U5Y  H24  H24  H  0  1  N  N  N  -143.533  -93.928  38.687  -2.842   0.913  -2.102  H22    HCI  51  
U5Y  H25  H25  H  0  1  N  N  N  -141.239  -95.278  38.378  -0.968   3.232  -2.373  H31    HCI  52  
U5Y  H26  H26  H  0  1  N  N  N  -141.700  -95.196  36.643  -2.412   3.249  -3.415  H32    HCI  53  
U5Y  H27  H27  H  0  1  N  N  N  -143.863  -96.148  35.893  -1.925   1.878   0.026  "H2'"  HCI  54  
U5Y  H34  H34  H  0  1  N  N  N  -145.775  -98.947  38.488  -5.003   4.356   1.657  "H4'"  HCI  55  
U5Y  H35  H35  H  0  1  N  N  N  -144.285  -98.273  40.331  -5.276   5.451  -0.528  "H5'"  HCI  56  
U5Y  H36  H36  H  0  1  N  N  N  -142.584  -96.522  39.958  -3.881   4.760  -2.433  "H6'"  HCI  57  
U5Y  H3   H3   H  0  1  N  N  N  -138.120  -89.619  35.984   6.135   2.684   0.844  H1     M6J  58  
U5Y  H4   H4   H  0  1  N  N  N  -137.543  -88.894  34.445   6.062   1.963   2.483  H2     M6J  59  
U5Y  H2   H2   H  0  1  N  N  N  -140.464  -88.123  30.023   6.731   1.077  -3.382  H3     M6J  60  
U5Y  H1   H1   H  0  1  N  N  N  -137.684  -91.101  32.796   7.029  -1.066   1.041  H4     M6J  61  
U5Y  H11  H11  H  0  1  N  N  N  -144.093  -91.704  34.672   1.667  -1.314  -2.032  H9     M6J  62  
U5Y  H12  H12  H  0  1  N  N  N  -141.192  -91.759  33.781   1.679   1.196  -1.481  H10    M6J  63  
U5Y  H13  H13  H  0  1  N  N  N  -142.494  -91.068  32.754   0.970   0.756   0.091  H11    M6J  64  
U5Y  H5   H5   H  0  1  N  N  N  -140.919  -87.100  34.875   2.267   2.465   0.844  H12    M6J  65  
U5Y  H6   H6   H  0  1  N  N  N  -140.838  -87.945  36.458   3.559   2.999  -0.273  H13    M6J  66  
U5Y  H18  H18  H  0  1  N  N  N  -138.769  -87.418  36.484   3.736   2.537   2.755  H14    M6J  67  
U5Y  H19  H19  H  0  1  N  N  N  -138.792  -86.932  34.755   4.320   3.943   1.803  H15    M6J  68  
U5Y  H14  H14  H  0  1  N  N  N  -139.479  -90.921  34.553   5.037   0.014   1.708  H16    M6J  69  
U5Y  H17  H17  H  0  1  N  N  N  -140.901  -88.315  32.442   5.187   1.745  -1.584  H17    M6J  70  
U5Y  H16  H16  H  0  1  N  N  N  -138.646  -89.425  28.991   8.421  -0.665  -2.970  H18    M6J  71  
U5Y  H15  H15  H  0  1  N  N  N  -137.250  -90.914  30.376   8.571  -1.737  -0.758  H19    M6J  72  
U5Y  H37  H37  H  0  1  N  N  N  -141.555  -92.842  35.655  -0.671  -1.007  -2.793  H30    M6J  73  
U5Y  H38  H38  H  0  1  N  N  N  -145.108  -92.124  32.519   1.494  -0.826   1.240  H      TYR  74  
U5Y  H7   H7   H  0  1  N  N  N  -144.269  -94.764  31.364   1.350  -3.280   2.188  HA     TYR  75  
U5Y  H30  H30  H  0  1  N  N  N  -147.071  -93.624  31.887  -0.425  -2.585   3.913  HB2    TYR  76  
U5Y  H31  H31  H  0  1  N  N  N  -146.762  -95.006  30.783   0.999  -1.528   3.784  HB3    TYR  77  
U5Y  H29  H29  H  0  1  N  N  N  -147.096  -94.002  34.268  -2.139  -1.888   1.768  HD1    TYR  78  
U5Y  H32  H32  H  0  1  N  N  N  -145.349  -96.929  31.689   0.418   0.686   4.010  HD2    TYR  79  
U5Y  H28  H28  H  0  1  N  N  N  -146.887  -95.560  36.174  -3.621   0.043   1.277  HE1    TYR  80  
U5Y  H33  H33  H  0  1  N  N  N  -145.105  -98.468  33.596  -1.037   2.607   3.519  HE2    TYR  81  
U5Y  H8   H8   H  0  1  N  N  N  -144.221  -91.879  27.931  -3.320  -3.838   1.077  H8     U5V  82  
U5Y  H9   H9   H  0  1  N  N  N  -144.683  -93.333  26.983  -2.444  -4.350  -0.385  H9     U5V  83  
U5Y  H10  H10  H  0  1  N  N  N  -139.465  -91.751  27.729  -3.843  -1.337  -3.753  H10    U5V  84  
U5Y  H20  H20  H  0  1  N  N  N  -138.918  -93.367  25.940  -5.824  -0.267  -2.757  H20    U5V  85  
U5Y  H21  H21  H  0  1  N  N  N  -140.689  -94.802  24.999  -6.389  -0.676  -0.396  H21    U5V  86  
U5Y  H22  H22  H  0  1  N  N  N  -143.008  -94.608  25.818  -4.977  -2.160   0.970  H22    U5V  87  
U5Y  H39  H39  H  0  1  N  N  N  -143.718  -94.606  29.045  -1.445  -1.832   0.416  H39    U5V  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U5Y  C30  C31  DOUB  Y  N   1  
U5Y  C30  C29  SING  Y  N   2  
U5Y  C31  C25  SING  Y  N   3  
U5Y  C29  C28  DOUB  Y  N   4  
U5Y  C25  C24  SING  N  N   5  
U5Y  C25  C26  DOUB  Y  N   6  
U5Y  C28  C26  SING  Y  N   7  
U5Y  C24  N23  SING  N  N   8  
U5Y  C26  F27  SING  N  N   9  
U5Y  N23  C22  SING  N  N  10  
U5Y  O32  C22  DOUB  N  N  11  
U5Y  C12  C13  DOUB  Y  N  12  
U5Y  C12  C11  SING  Y  N  13  
U5Y  C22  C21  SING  N  N  14  
U5Y  C13  C14  SING  Y  N  15  
U5Y  C11  C10  DOUB  Y  N  16  
U5Y  C21  C44  SING  N  N  17  
U5Y  C21  N20  SING  N  N  18  
U5Y  C44  C43  SING  N  N  19  
U5Y  C14  C09  DOUB  Y  N  20  
U5Y  C10  C09  SING  Y  N  21  
U5Y  N20  C19  SING  N  N  22  
U5Y  C45  C43  DOUB  Y  N  23  
U5Y  C45  C46  SING  Y  N  24  
U5Y  C09  C08  SING  N  N  25  
U5Y  C43  C42  SING  Y  N  26  
U5Y  O33  C19  DOUB  N  N  27  
U5Y  C19  C04  SING  N  N  28  
U5Y  C46  C40  DOUB  Y  N  29  
U5Y  C05  C04  SING  N  N  30  
U5Y  C05  C06  SING  N  N  31  
U5Y  C42  C41  DOUB  Y  N  32  
U5Y  C08  N07  SING  N  N  33  
U5Y  C08  C15  SING  N  N  34  
U5Y  C04  N03  SING  N  N  35  
U5Y  C06  N07  SING  N  N  36  
U5Y  C06  O18  DOUB  N  N  37  
U5Y  N07  C17  SING  N  N  38  
U5Y  C40  C41  SING  Y  N  39  
U5Y  C40  O39  SING  N  N  40  
U5Y  C15  C16  SING  N  N  41  
U5Y  C17  C16  SING  N  N  42  
U5Y  N03  C02  SING  N  N  43  
U5Y  O39  C38  SING  N  N  44  
U5Y  O01  C02  DOUB  N  N  45  
U5Y  C02  C34  SING  N  N  46  
U5Y  C37  C38  DOUB  Y  N  47  
U5Y  C37  C36  SING  Y  N  48  
U5Y  C38  C47  SING  Y  N  49  
U5Y  C35  C36  SING  N  N  50  
U5Y  C35  C34  SING  N  N  51  
U5Y  C36  C49  DOUB  Y  N  52  
U5Y  C47  C48  DOUB  Y  N  53  
U5Y  C49  C48  SING  Y  N  54  
U5Y  C10  H1   SING  N  N  55  
U5Y  C13  H2   SING  N  N  56  
U5Y  C15  H3   SING  N  N  57  
U5Y  C15  H4   SING  N  N  58  
U5Y  C17  H5   SING  N  N  59  
U5Y  C17  H6   SING  N  N  60  
U5Y  C21  H7   SING  N  N  61  
U5Y  C24  H8   SING  N  N  62  
U5Y  C24  H9   SING  N  N  63  
U5Y  C28  H10  SING  N  N  64  
U5Y  C04  H11  SING  N  N  65  
U5Y  C05  H12  SING  N  N  66  
U5Y  C05  H13  SING  N  N  67  
U5Y  C08  H14  SING  N  N  68  
U5Y  C11  H15  SING  N  N  69  
U5Y  C12  H16  SING  N  N  70  
U5Y  C14  H17  SING  N  N  71  
U5Y  C16  H18  SING  N  N  72  
U5Y  C16  H19  SING  N  N  73  
U5Y  C29  H20  SING  N  N  74  
U5Y  C30  H21  SING  N  N  75  
U5Y  C31  H22  SING  N  N  76  
U5Y  C34  H23  SING  N  N  77  
U5Y  C34  H24  SING  N  N  78  
U5Y  C35  H25  SING  N  N  79  
U5Y  C35  H26  SING  N  N  80  
U5Y  C37  H27  SING  N  N  81  
U5Y  C41  H28  SING  N  N  82  
U5Y  C42  H29  SING  N  N  83  
U5Y  C44  H30  SING  N  N  84  
U5Y  C44  H31  SING  N  N  85  
U5Y  C45  H32  SING  N  N  86  
U5Y  C46  H33  SING  N  N  87  
U5Y  C47  H34  SING  N  N  88  
U5Y  C48  H35  SING  N  N  89  
U5Y  C49  H36  SING  N  N  90  
U5Y  N03  H37  SING  N  N  91  
U5Y  N20  H38  SING  N  N  92  
U5Y  N23  H39  SING  N  N  93  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U5Y  SMILES            ACDLabs               12.01  "C2(CCc1cccc(c1)Oc6ccc(CC(NC(C(N2)CC(N4CCCC4c3ccccc3)=O)=O)C(=O)NCc5c(F)cccc5)cc6)=O"  
U5Y  InChI             InChI                 1.03   "InChI=1S/C39H39FN4O5/c40-32-13-5-4-11-29(32)25-41-38(47)33-23-27-15-18-30(19-16-27)49-31-12-6-8-26(22-31)17-20-36(45)42-34(39(48)43-33)24-37(46)44-21-7-14-35(44)28-9-2-1-3-10-28/h1-6,8-13,15-16,18-19,22,33-35H,7,14,17,20-21,23-25H2,(H,41,47)(H,42,45)(H,43,48)/t33-,34-,35+/m0/s1"  
U5Y  InChIKey          InChI                 1.03   GSMYFOQUVZHNEZ-PUPDPRJKSA-N  
U5Y  SMILES_CANONICAL  CACTVS                3.385  "Fc1ccccc1CNC(=O)[C@@H]2Cc3ccc(Oc4cccc(CCC(=O)N[C@@H](CC(=O)N5CCC[C@@H]5c6ccccc6)C(=O)N2)c4)cc3"  
U5Y  SMILES            CACTVS                3.385  "Fc1ccccc1CNC(=O)[CH]2Cc3ccc(Oc4cccc(CCC(=O)N[CH](CC(=O)N5CCC[CH]5c6ccccc6)C(=O)N2)c4)cc3"  
U5Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)[C@H]2CCCN2C(=O)C[C@H]3C(=O)N[C@@H](Cc4ccc(cc4)Oc5cccc(c5)CCC(=O)N3)C(=O)NCc6ccccc6F"  
U5Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C2CCCN2C(=O)CC3C(=O)NC(Cc4ccc(cc4)Oc5cccc(c5)CCC(=O)N3)C(=O)NCc6ccccc6F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U5Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(12S,15S)-N-[(2-fluorophenyl)methyl]-10,13-dioxo-12-{2-oxo-2-[(2R)-2-phenylpyrrolidin-1-yl]ethyl}-2-oxa-11,14-diazatricyclo[15.2.2.1~3,7~]docosa-1(19),3(22),4,6,17,20-hexaene-15-carboxamide"  
U5Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(12~{S},15~{S})-~{N}-[(2-fluorophenyl)methyl]-10,13-bis(oxidanylidene)-12-[2-oxidanylidene-2-[(2~{R})-2-phenylpyrrolidin-1-yl]ethyl]-2-oxa-11,14-diazatricyclo[15.2.2.1^{3,7}]docosa-1(19),3(22),4,6,17,20-hexaene-15-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U5Y  "Create component"  2020-04-23  RCSB  
U5Y  "Initial release"   2021-04-28  RCSB  
##
