data_T6Y
# 
_chem_comp.id                                    T6Y 
_chem_comp.name                                  "1-{4-[(5-chlorothiophen-2-yl)methyl]piperazin-1-yl}ethan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 Cl N2 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-03-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        258.768 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T6Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5RFH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T6Y N1  N1  N  0 1 N N N N N N 8.426  -2.618 23.287 -0.900 -1.043 -0.038 N1  T6Y 1  
T6Y C4  C1  C  0 1 N N N N N N 9.590  -3.023 24.096 0.214  -1.688 -0.746 C4  T6Y 2  
T6Y C5  C2  C  0 1 Y N N N N N 9.291  -4.111 25.082 1.518  -1.100 -0.270 C5  T6Y 3  
T6Y C6  C3  C  0 1 Y N N N N N 9.747  -5.424 25.050 2.240  -1.559 0.753  C6  T6Y 4  
T6Y C7  C4  C  0 1 Y N N N N N 9.430  -6.151 26.221 3.406  -0.856 1.005  C7  T6Y 5  
T6Y C8  C5  C  0 1 Y N N N N N 8.533  -5.450 27.016 3.630  0.174  0.186  C8  T6Y 6  
T6Y C10 C6  C  0 1 N N N N N N 7.670  -1.552 21.194 -2.049 1.053  0.493  C10 T6Y 7  
T6Y N   N2  N  0 1 N N N N N N 6.828  -2.717 20.909 -3.306 0.297  0.387  N   T6Y 8  
T6Y C   C7  C  0 1 N N N N N N 7.100  -2.528 18.461 -5.743 0.126  0.001  C   T6Y 9  
T6Y O   O1  O  0 1 N N N N N N 5.755  -4.158 19.552 -4.484 2.122  -0.066 O   T6Y 10 
T6Y C1  C8  C  0 1 N N N N N N 6.496  -3.187 19.687 -4.467 0.921  0.105  C1  T6Y 11 
T6Y C2  C9  C  0 1 N N N N N N 6.390  -3.362 22.143 -3.262 -1.158 0.597  C2  T6Y 12 
T6Y C3  C10 C  0 1 N N N N N N 7.599  -3.779 22.945 -2.164 -1.746 -0.295 C3  T6Y 13 
T6Y C9  C11 C  0 1 N N N N N N 8.852  -1.952 22.051 -0.998 0.379  -0.395 C9  T6Y 14 
T6Y S   S1  S  0 1 Y N N N N N 8.271  -3.850 26.453 2.323  0.290  -0.986 S   T6Y 15 
T6Y CL  CL1 CL 0 0 N N N N N N 7.710  -6.026 28.408 5.004  1.233  0.261  CL  T6Y 16 
T6Y H8  H2  H  0 1 N N N N N N 10.378 -3.378 23.416 0.203  -2.759 -0.542 H8  T6Y 17 
T6Y H7  H3  H  0 1 N N N N N N 9.951  -2.143 24.649 0.109  -1.520 -1.817 H7  T6Y 18 
T6Y H9  H4  H  0 1 N N N N N N 10.288 -5.846 24.216 1.938  -2.413 1.340  H9  T6Y 19 
T6Y H10 H5  H  0 1 N N N N N N 9.833  -7.123 26.465 4.083  -1.120 1.805  H10 T6Y 20 
T6Y H13 H6  H  0 1 N N N N N N 7.075  -0.796 21.728 -2.209 2.078  0.157  H13 T6Y 21 
T6Y H14 H7  H  0 1 N N N N N N 8.036  -1.129 20.247 -1.709 1.056  1.529  H14 T6Y 22 
T6Y H   H8  H  0 1 N N N N N N 6.762  -3.055 17.557 -5.937 -0.375 0.949  H   T6Y 23 
T6Y H2  H9  H  0 1 N N N N N N 6.779  -1.477 18.414 -6.570 0.797  -0.232 H2  T6Y 24 
T6Y H1  H10 H  0 1 N N N N N N 8.197  -2.574 18.523 -5.645 -0.617 -0.790 H1  T6Y 25 
T6Y H3  H11 H  0 1 N N N N N N 5.784  -2.657 22.731 -3.038 -1.370 1.642  H3  T6Y 26 
T6Y H4  H12 H  0 1 N N N N N N 5.787  -4.249 21.900 -4.226 -1.595 0.333  H4  T6Y 27 
T6Y H5  H13 H  0 1 N N N N N N 7.265  -4.269 23.872 -2.442 -1.623 -1.342 H5  T6Y 28 
T6Y H6  H14 H  0 1 N N N N N N 8.198  -4.486 22.352 -2.043 -2.806 -0.072 H6  T6Y 29 
T6Y H11 H15 H  0 1 N N N N N N 9.425  -1.050 22.312 -0.032 0.859  -0.245 H11 T6Y 30 
T6Y H12 H16 H  0 1 N N N N N N 9.491  -2.640 21.478 -1.292 0.471  -1.441 H12 T6Y 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T6Y C1  C   SING N N 1  
T6Y C1  O   DOUB N N 2  
T6Y N   C1  SING N N 3  
T6Y C2  N   SING N N 4  
T6Y C3  C2  SING N N 5  
T6Y N1  C3  SING N N 6  
T6Y C4  N1  SING N N 7  
T6Y C5  C4  SING N N 8  
T6Y C6  C5  DOUB Y N 9  
T6Y C7  C6  SING Y N 10 
T6Y C8  C7  DOUB Y N 11 
T6Y CL  C8  SING N N 12 
T6Y C8  S   SING Y N 13 
T6Y S   C5  SING Y N 14 
T6Y N1  C9  SING N N 15 
T6Y C9  C10 SING N N 16 
T6Y C10 N   SING N N 17 
T6Y C4  H8  SING N N 18 
T6Y C4  H7  SING N N 19 
T6Y C6  H9  SING N N 20 
T6Y C7  H10 SING N N 21 
T6Y C10 H13 SING N N 22 
T6Y C10 H14 SING N N 23 
T6Y C   H   SING N N 24 
T6Y C   H2  SING N N 25 
T6Y C   H1  SING N N 26 
T6Y C2  H3  SING N N 27 
T6Y C2  H4  SING N N 28 
T6Y C3  H5  SING N N 29 
T6Y C3  H6  SING N N 30 
T6Y C9  H11 SING N N 31 
T6Y C9  H12 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T6Y SMILES           ACDLabs              12.01 "N1(CCN(CC1)C(C)=O)Cc2ccc(s2)Cl"                                                      
T6Y InChI            InChI                1.03  "InChI=1S/C11H15ClN2OS/c1-9(15)14-6-4-13(5-7-14)8-10-2-3-11(12)16-10/h2-3H,4-8H2,1H3" 
T6Y InChIKey         InChI                1.03  KIKCPJKIAGFHCO-UHFFFAOYSA-N                                                           
T6Y SMILES_CANONICAL CACTVS               3.385 "CC(=O)N1CCN(CC1)Cc2sc(Cl)cc2"                                                        
T6Y SMILES           CACTVS               3.385 "CC(=O)N1CCN(CC1)Cc2sc(Cl)cc2"                                                        
T6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)Cc2ccc(s2)Cl"                                                        
T6Y SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)Cc2ccc(s2)Cl"                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T6Y "SYSTEMATIC NAME" ACDLabs              12.01 "1-{4-[(5-chlorothiophen-2-yl)methyl]piperazin-1-yl}ethan-1-one" 
T6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[(5-chloranylthiophen-2-yl)methyl]piperazin-1-yl]ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T6Y "Create component" 2020-03-16 RCSB 
T6Y "Initial release"  2020-03-25 RCSB 
T6Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            T6Y 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
