data_SRY
#

_chem_comp.id                                   SRY
_chem_comp.name                                 STREPTOMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H39 N7 O12"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "STREPTOMYCIN A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-08-25
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       581.574
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SRY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1NTA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SRY  C11   C11   C  0  1  N  N  R   6.651  34.161  -1.203  -4.507   0.184  -0.242  C11   SRY   1  
SRY  N11   N11   N  0  1  N  N  N   7.760  33.416  -0.486  -5.686   0.670  -0.963  N11   SRY   2  
SRY  CA1   CA1   C  0  1  N  N  N   8.902  33.432  -1.157  -6.824  -0.099  -1.017  CA1   SRY   3  
SRY  NB1   NB1   N  0  1  N  N  N   9.591  34.506  -1.048  -6.856  -1.324  -0.394  NB1   SRY   4  
SRY  NC1   NC1   N  0  1  N  N  N   9.292  32.429  -1.867  -7.873   0.334  -1.659  NC1   SRY   5  
SRY  C21   C21   C  0  1  N  N  R   5.865  35.030  -0.203  -3.657   1.374   0.207  C21   SRY   6  
SRY  O21   O21   O  0  1  N  N  N   6.753  35.981   0.302  -4.429   2.213   1.068  O21   SRY   7  
SRY  C31   C31   C  0  1  N  N  S   4.712  35.791  -0.871  -2.425   0.866   0.961  C31   SRY   8  
SRY  N31   N31   N  0  1  N  N  N   3.930  36.635   0.064  -1.611   2.006   1.390  N31   SRY   9  
SRY  CD1   CD1   C  0  1  N  N  N   3.954  36.163   1.265  -1.902   2.653   2.568  CD1   SRY  10  
SRY  NE1   NE1   N  0  1  N  N  N   4.748  35.211   1.681  -1.138   3.722   2.971  NE1   SRY  11  
SRY  NF1   NF1   N  0  1  N  N  N   3.107  36.677   2.068  -2.902   2.252   3.302  NF1   SRY  12  
SRY  C41   C41   C  0  1  N  N  R   3.786  34.772  -1.516  -1.599  -0.033   0.039  C41   SRY  13  
SRY  O41   O41   O  0  1  N  N  N   2.724  35.481  -2.135  -0.449  -0.507   0.743  O41   SRY  14  
SRY  C51   C51   C  0  1  N  N  R   4.566  33.922  -2.559  -2.449  -1.223  -0.410  C51   SRY  15  
SRY  O51   O51   O  0  1  N  N  N   3.679  32.980  -3.160  -1.676  -2.063  -1.270  O51   SRY  16  
SRY  C61   C61   C  0  1  N  N  S   5.708  33.167  -1.847  -3.680  -0.715  -1.163  C61   SRY  17  
SRY  O61   O61   O  0  1  N  N  N   6.441  32.374  -2.795  -4.474  -1.827  -1.582  O61   SRY  18  
SRY  C12   C12   C  0  1  N  N  R   1.451  35.087  -1.593   0.684  -0.752  -0.093  C12   SRY  19  
SRY  C22   C22   C  0  1  N  N  S   0.436  36.009  -2.260   1.910  -1.140   0.763  C22   SRY  20  
SRY  C32   C32   C  0  1  N  N  S  -0.011  35.173  -3.379   1.893  -2.684   0.766  C32   SRY  21  
SRY  O32   O32   O  0  1  N  N  N  -1.371  34.816  -3.124   3.085  -3.200   0.168  O32   SRY  22  
SRY  CG2   CG2   C  0  1  N  N  N   0.141  35.947  -4.661   1.739  -3.208   2.170  CG2   SRY  23  
SRY  OG2   OG2   O  0  1  N  N  N  -0.096  35.511  -5.766   0.791  -3.898   2.457  OG2   SRY  24  
SRY  C42   C42   C  0  1  N  N  S   0.795  33.946  -3.401   0.659  -3.048  -0.089  C42   SRY  25  
SRY  CH2   CH2   C  0  1  N  N  N   0.177  32.698  -3.951   0.943  -4.291  -0.935  CH2   SRY  26  
SRY  O42   O42   O  0  1  N  N  N   1.203  33.777  -2.049   0.447  -1.899  -0.938  O42   SRY  27  
SRY  O13   O13   O  0  1  N  N  N  -0.430  36.466  -1.371   3.113  -0.653   0.163  O13   SRY  28  
SRY  C13   C13   C  0  1  N  N  S   0.183  37.124  -0.318   3.562   0.596   0.692  C13   SRY  29  
SRY  C23   C23   C  0  1  N  N  S   0.101  38.634  -0.362   5.014   0.837   0.271  C23   SRY  30  
SRY  N23   N23   N  0  1  N  N  N   0.622  39.082  -1.607   5.851  -0.276   0.739  N23   SRY  31  
SRY  CI3   CI3   C  0  1  N  N  N   2.032  39.369  -1.403   6.284  -0.061   2.126  CI3   SRY  32  
SRY  C33   C33   C  0  1  N  N  S  -1.212  39.067  -0.241   5.087   0.925  -1.257  C33   SRY  33  
SRY  O33   O33   O  0  1  N  N  N  -1.183  40.450   0.007   6.426   1.222  -1.655  O33   SRY  34  
SRY  C43   C43   C  0  1  N  N  R  -1.892  38.365   0.905   4.150   2.037  -1.738  C43   SRY  35  
SRY  O43   O43   O  0  1  N  N  N  -3.262  38.635   0.854   4.155   2.081  -3.166  O43   SRY  36  
SRY  C53   C53   C  0  1  N  N  S  -1.700  36.892   0.779   2.731   1.750  -1.240  C53   SRY  37  
SRY  O53   O53   O  0  1  N  N  N  -0.327  36.633   0.835   2.740   1.650   0.186  O53   SRY  38  
SRY  C63   C63   C  0  1  N  N  N  -2.366  36.138   1.947   1.801   2.888  -1.665  C63   SRY  39  
SRY  O63   O63   O  0  1  N  N  N  -2.278  36.930   3.126   0.457   2.566  -1.302  O63   SRY  40  
SRY  H11   H11   H  0  1  N  N  N   7.096  34.807  -1.974  -4.825  -0.386   0.632  H11   SRY  41  
SRY  HN11  1HN1  H  0  0  N  N  N   7.642  32.962   0.397  -5.663   1.534  -1.403  HN11  SRY  42  
SRY  HB11  1HB1  H  0  0  N  N  N  10.434  34.440  -1.581  -6.076  -1.646   0.084  HB11  SRY  43  
SRY  HB12  2HB1  H  0  0  N  N  N   9.323  35.301  -0.504  -7.660  -1.866  -0.432  HB12  SRY  44  
SRY  HC11  1HC1  H  0  0  N  N  N   8.623  31.687  -1.826  -7.850   1.198  -2.098  HC11  SRY  45  
SRY  H21   H21   H  0  1  N  N  N   5.442  34.373   0.571  -3.339   1.943  -0.666  H21   SRY  46  
SRY  HO21  1HO2  H  0  0  N  N  N   6.955  35.777   1.208  -5.227   2.572   0.655  HO21  SRY  47  
SRY  H31   H31   H  0  1  N  N  N   5.155  36.477  -1.608  -2.743   0.297   1.834  H31   SRY  48  
SRY  HN31  1HN3  H  0  0  N  N  N   3.444  37.467  -0.203  -0.867   2.304   0.844  HN31  SRY  49  
SRY  HE11  1HE1  H  0  0  N  N  N   4.611  34.989   2.646  -0.394   4.020   2.425  HE11  SRY  50  
SRY  HE12  2HE1  H  0  0  N  N  N   5.420  34.755   1.097  -1.343   4.179   3.802  HE12  SRY  51  
SRY  HF11  1HF1  H  0  0  N  N  N   2.549  37.386   1.637  -3.441   1.498   3.018  HF11  SRY  52  
SRY  H41   H41   H  0  1  N  N  N   3.385  34.081  -0.760  -1.281   0.536  -0.835  H41   SRY  53  
SRY  H51   H51   H  0  1  N  N  N   4.984  34.580  -3.335  -2.767  -1.792   0.464  H51   SRY  54  
SRY  HO51  1HO5  H  0  0  N  N  N   3.482  33.252  -4.049  -2.153  -2.839  -1.594  HO51  SRY  55  
SRY  H61   H61   H  0  1  N  N  N   5.274  32.511  -1.078  -3.362  -0.146  -2.037  H61   SRY  56  
SRY  HO61  1HO6  H  0  0  N  N  N   6.603  32.886  -3.579  -4.012  -2.440  -2.170  HO61  SRY  57  
SRY  H12   H12   H  0  1  N  N  N   1.409  35.136  -0.495   0.906   0.127  -0.698  H12   SRY  58  
SRY  H22   H22   H  0  1  N  N  N   0.778  36.974  -2.663   1.805  -0.754   1.777  H22   SRY  59  
SRY  HO32  2HO3  H  0  0  N  N  N  -1.508  34.737  -2.187   3.127  -4.165   0.144  HO32  SRY  60  
SRY  HG21  1HG2  H  0  0  N  N  N   0.487  36.968  -4.590   2.477  -2.966   2.921  HG21  SRY  61  
SRY  H42   H42   H  0  1  N  N  N   1.611  34.087  -4.125  -0.209  -3.215   0.549  H42   SRY  62  
SRY  HH21  1HH2  H  0  0  N  N  N   0.025  32.810  -5.035   1.181  -5.129  -0.280  HH21  SRY  63  
SRY  HH22  2HH2  H  0  0  N  N  N   0.844  31.844  -3.761   0.064  -4.534  -1.531  HH22  SRY  64  
SRY  HH23  3HH2  H  0  0  N  N  N  -0.792  32.523  -3.462   1.788  -4.095  -1.596  HH23  SRY  65  
SRY  H13   H13   H  0  1  N  N  N   1.262  36.926  -0.395   3.497   0.575   1.780  H13   SRY  66  
SRY  H23   H23   H  0  1  N  N  N   0.682  39.044   0.477   5.370   1.770   0.708  H23   SRY  67  
SRY  HN23  3HN2  H  0  0  N  N  N   0.510  38.374  -2.304   5.369  -1.157   0.643  HN23  SRY  68  
SRY  HI31  1HI3  H  0  0  N  N  N   2.537  39.442  -2.378   6.862   0.861   2.188  HI31  SRY  69  
SRY  HI32  2HI3  H  0  0  N  N  N   2.138  40.322  -0.864   5.410   0.014   2.772  HI32  SRY  70  
SRY  HI33  3HI3  H  0  0  N  N  N   2.489  38.561  -0.813   6.903  -0.900   2.447  HI33  SRY  71  
SRY  H33   H33   H  0  1  N  N  N  -1.770  38.844  -1.162   4.779  -0.026  -1.692  H33   SRY  72  
SRY  HO33  3HO3  H  0  0  N  N  N  -1.176  40.604   0.944   6.546   1.293  -2.612  HO33  SRY  73  
SRY  H43   H43   H  0  1  N  N  N  -1.462  38.719   1.854   4.489   2.995  -1.343  H43   SRY  74  
SRY  HO43  3HO4  H  0  0  N  N  N  -3.606  38.696   1.737   3.582   2.764  -3.541  HO43  SRY  75  
SRY  H53   H53   H  0  1  N  N  N  -2.151  36.556  -0.166   2.378   0.812  -1.668  H53   SRY  76  
SRY  H631  1H63  H  0  0  N  N  N  -3.423  35.949   1.708   2.101   3.809  -1.166  H631  SRY  77  
SRY  H632  2H63  H  0  0  N  N  N  -1.853  35.178   2.108   1.863   3.023  -2.745  H632  SRY  78  
SRY  HO63  3HO6  H  0  0  N  N  N  -2.258  36.363   3.888  -0.189   3.244  -1.543  HO63  SRY  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SRY  C11  N11   SING  N  N   1  
SRY  C11  C21   SING  N  N   2  
SRY  C11  C61   SING  N  N   3  
SRY  C11  H11   SING  N  N   4  
SRY  N11  CA1   SING  N  N   5  
SRY  N11  HN11  SING  N  N   6  
SRY  CA1  NB1   SING  N  N   7  
SRY  CA1  NC1   DOUB  N  N   8  
SRY  NB1  HB11  SING  N  N   9  
SRY  NB1  HB12  SING  N  N  10  
SRY  NC1  HC11  SING  N  N  11  
SRY  C21  O21   SING  N  N  12  
SRY  C21  C31   SING  N  N  13  
SRY  C21  H21   SING  N  N  14  
SRY  O21  HO21  SING  N  N  15  
SRY  C31  N31   SING  N  N  16  
SRY  C31  C41   SING  N  N  17  
SRY  C31  H31   SING  N  N  18  
SRY  N31  CD1   SING  N  N  19  
SRY  N31  HN31  SING  N  N  20  
SRY  CD1  NE1   SING  N  N  21  
SRY  CD1  NF1   DOUB  N  N  22  
SRY  NE1  HE11  SING  N  N  23  
SRY  NE1  HE12  SING  N  N  24  
SRY  NF1  HF11  SING  N  N  25  
SRY  C41  O41   SING  N  N  26  
SRY  C41  C51   SING  N  N  27  
SRY  C41  H41   SING  N  N  28  
SRY  O41  C12   SING  N  N  29  
SRY  C51  O51   SING  N  N  30  
SRY  C51  C61   SING  N  N  31  
SRY  C51  H51   SING  N  N  32  
SRY  O51  HO51  SING  N  N  33  
SRY  C61  O61   SING  N  N  34  
SRY  C61  H61   SING  N  N  35  
SRY  O61  HO61  SING  N  N  36  
SRY  C12  C22   SING  N  N  37  
SRY  C12  O42   SING  N  N  38  
SRY  C12  H12   SING  N  N  39  
SRY  C22  C32   SING  N  N  40  
SRY  C22  O13   SING  N  N  41  
SRY  C22  H22   SING  N  N  42  
SRY  C32  O32   SING  N  N  43  
SRY  C32  CG2   SING  N  N  44  
SRY  C32  C42   SING  N  N  45  
SRY  O32  HO32  SING  N  N  46  
SRY  CG2  OG2   DOUB  N  N  47  
SRY  CG2  HG21  SING  N  N  48  
SRY  C42  CH2   SING  N  N  49  
SRY  C42  O42   SING  N  N  50  
SRY  C42  H42   SING  N  N  51  
SRY  CH2  HH21  SING  N  N  52  
SRY  CH2  HH22  SING  N  N  53  
SRY  CH2  HH23  SING  N  N  54  
SRY  O13  C13   SING  N  N  55  
SRY  C13  C23   SING  N  N  56  
SRY  C13  O53   SING  N  N  57  
SRY  C13  H13   SING  N  N  58  
SRY  C23  N23   SING  N  N  59  
SRY  C23  C33   SING  N  N  60  
SRY  C23  H23   SING  N  N  61  
SRY  N23  CI3   SING  N  N  62  
SRY  N23  HN23  SING  N  N  63  
SRY  CI3  HI31  SING  N  N  64  
SRY  CI3  HI32  SING  N  N  65  
SRY  CI3  HI33  SING  N  N  66  
SRY  C33  O33   SING  N  N  67  
SRY  C33  C43   SING  N  N  68  
SRY  C33  H33   SING  N  N  69  
SRY  O33  HO33  SING  N  N  70  
SRY  C43  O43   SING  N  N  71  
SRY  C43  C53   SING  N  N  72  
SRY  C43  H43   SING  N  N  73  
SRY  O43  HO43  SING  N  N  74  
SRY  C53  O53   SING  N  N  75  
SRY  C53  C63   SING  N  N  76  
SRY  C53  H53   SING  N  N  77  
SRY  C63  O63   SING  N  N  78  
SRY  C63  H631  SING  N  N  79  
SRY  C63  H632  SING  N  N  80  
SRY  O63  HO63  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SRY  SMILES            ACDLabs               10.04  "O=CC3(O)C(OC1OC(C(O)C(O)C1NC)CO)C(OC2C(NC(=[N@H])N)C(O)C(NC(=[N@H])N)C(O)C2O)OC3C"  
SRY  InChI             InChI                 1.03   "InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1"  
SRY  InChIKey          InChI                 1.03   UCSJYZPVAKXKNQ-HZYVHMACSA-N  
SRY  SMILES_CANONICAL  CACTVS                3.385  "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O[C@@H](C)[C@]2(O)C=O)O[C@H]3[C@H](O)[C@@H](O)[C@H](NC(N)=N)[C@@H](O)[C@@H]3NC(N)=N"  
SRY  SMILES            CACTVS                3.385  "CN[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O[CH](C)[C]2(O)C=O)O[CH]3[CH](O)[CH](O)[CH](NC(N)=N)[CH](O)[CH]3NC(N)=N"  
SRY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "[H]/N=C(/N)\N[C@@H]1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O[C@H]2[C@@H]([C@]([C@@H](O2)C)(C=O)O)O[C@H]3[C@H]([C@@H]([C@H]([C@@H](O3)CO)O)O)NC)N/C(=N\[H])/N)O"  
SRY  SMILES            "OpenEye OEToolkits"  1.7.5  "CC1C(C(C(O1)OC2C(C(C(C(C2O)O)NC(=N)N)O)NC(=N)N)OC3C(C(C(C(O3)CO)O)O)NC)(C=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SRY  "SYSTEMATIC NAME"  ACDLabs               10.04  "N,N'''-[(1R,2R,3S,4R,5R,6S)-4-({5-deoxy-2-O-[2-deoxy-2-(methylamino)-alpha-L-glucopyranosyl]-3-C-formyl-alpha-L-lyxofuranosyl}oxy)-2,5,6-trihydroxycyclohexane-1,3-diyl]diguanidine"  
SRY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "1-[(1R,2R,3S,4R,5R,6S)-3-carbamimidamido-4-[(2R,3R,4R,5S)-3-[(2S,3S,4S,5R,6S)-4,5-dihydroxy-6-(hydroxymethyl)-3-methylamino-oxan-2-yl]oxy-4-hydroxy-4-methanoyl-5-methyl-oxolan-2-yl]oxy-2,5,6-trihydroxy-cyclohexyl]guanidine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SRY  "Create component"    2000-08-25  EBI   
SRY  "Modify descriptor"   2011-06-04  RCSB  
SRY  "Modify descriptor"   2012-01-05  RCSB  
SRY  "Modify coordinates"  2012-01-05  RCSB  
SRY  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SRY
_pdbx_chem_comp_synonyms.name        "STREPTOMYCIN A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
