data_SIY
# 
_chem_comp.id                                    SIY 
_chem_comp.name                                  "(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[[(1~{E},3~{R},4~{S},8~{R},9~{R},10~{R},11~{S},14~{S})-14-(methoxymethyl)-3,10-dimethyl-4,9-bis(oxidanyl)-6-propan-2-yl-8-tricyclo[9.3.0.0^{3,7}]tetradeca-1,6-dienyl]oxy]-6-(2-methylbut-3-en-2-yloxymethyl)oxane-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H52 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-15 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        580.750 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SIY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BZE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SIY C01  C1  C 0 1 N N N N N N 14.252 17.682 -1.139 -2.561 4.728  0.762  C01  SIY 1  
SIY C02  C2  C 0 1 N N N N N N 14.829 18.846 -0.329 -2.227 3.251  0.978  C02  SIY 2  
SIY C03  C3  C 0 1 N N N N N N 14.140 19.073 1.033  -3.524 2.447  1.093  C03  SIY 3  
SIY C04  C4  C 0 1 N N N N N N 16.321 18.534 -0.060 -1.424 2.743  -0.186 C04  SIY 4  
SIY C05  C5  C 0 1 N N N N N N 17.517 19.222 -0.670 -0.245 2.171  -0.117 C05  SIY 5  
SIY C06  C6  C 0 1 N N R N N N 18.867 18.689 0.022  0.242  1.879  -1.510 C06  SIY 6  
SIY C07  C7  C 0 1 N N S N N N 18.443 17.202 0.305  -1.050 1.739  -2.351 C07  SIY 7  
SIY C09  C8  C 0 1 N N N N N N 16.847 17.342 0.706  -1.911 2.774  -1.613 C09  SIY 8  
SIY C10  C9  C 0 1 N N N N N N 19.942 18.681 -1.106 1.093  2.991  -2.136 C10  SIY 9  
SIY C11  C10 C 0 1 N N N N N N 19.350 19.258 1.175  0.916  0.552  -1.500 C11  SIY 10 
SIY C12  C11 C 0 1 N N N N N N 19.064 20.365 1.804  2.009  0.205  -0.873 C12  SIY 11 
SIY C13  C12 C 0 1 N N S N N N 17.787 21.333 1.576  2.896  0.860  0.125  C13  SIY 12 
SIY C14  C13 C 0 1 N N N N N N 17.690 22.029 2.892  4.252  0.530  -0.557 C14  SIY 13 
SIY C15  C14 C 0 1 N N N N N N 19.176 22.190 3.472  4.084  -0.971 -0.838 C15  SIY 14 
SIY C16  C15 C 0 1 N N S N N N 19.756 20.763 3.038  2.588  -1.197 -1.069 C16  SIY 15 
SIY C17  C16 C 0 1 N N N N N N 21.246 20.870 2.841  2.355  -1.702 -2.494 C17  SIY 16 
SIY C19  C17 C 0 1 N N N N N N 23.271 21.305 3.962  2.632  -3.624 -3.899 C19  SIY 17 
SIY C20  C18 C 0 1 N N R N N N 17.840 22.272 0.469  2.887  2.244  0.672  C20  SIY 18 
SIY C21  C19 C 0 1 N N N N N N 19.347 22.530 -0.024 3.595  3.258  -0.235 C21  SIY 19 
SIY C22  C20 C 0 1 N N R N N N 16.878 21.945 -0.719 1.586  2.788  1.196  C22  SIY 20 
SIY C24  C21 C 0 1 N N R N N N 17.337 20.458 -1.738 0.439  1.804  1.178  C24  SIY 21 
SIY C26  C22 C 0 1 N N S N N N 17.091 20.317 -3.831 0.148  -0.224 2.405  C26  SIY 22 
SIY C27  C23 C 0 1 N N R N N N 15.986 20.334 -4.898 1.119  -1.246 3.002  C27  SIY 23 
SIY C29  C24 C 0 1 N N S N N N 15.250 19.041 -4.818 1.434  -2.315 1.951  C29  SIY 24 
SIY C31  C25 C 0 1 N N S N N N 16.117 17.875 -5.044 0.124  -2.959 1.486  C31  SIY 25 
SIY C33  C26 C 0 1 N N R N N N 17.313 17.892 -4.067 -0.808 -1.871 0.947  C33  SIY 26 
SIY C34  C27 C 0 1 N N N N N N 18.312 16.751 -4.468 -2.142 -2.499 0.537  C34  SIY 27 
SIY C36  C28 C 0 1 N N N N N N 19.497 15.980 -6.405 -4.306 -1.951 -0.337 C36  SIY 28 
SIY C37  C29 C 0 1 N N N N N N 19.572 16.302 -7.898 -4.225 -3.176 -1.250 C37  SIY 29 
SIY C38  C30 C 0 1 N N N N N N 20.933 16.065 -5.811 -5.067 -0.853 -1.034 C38  SIY 30 
SIY C39  C31 C 0 1 N N N N N N 21.525 15.002 -5.236 -4.465 0.269  -1.340 C39  SIY 31 
SIY C40  C32 C 0 1 N N N N N N 18.831 14.575 -6.225 -5.027 -2.328 0.959  C40  SIY 32 
SIY O08  O1  O 0 1 N N N N N N 19.078 16.552 1.267  -1.611 0.438  -2.219 O08  SIY 33 
SIY O18  O2  O 0 1 N N N N N N 21.864 21.199 4.081  2.805  -3.054 -2.600 O18  SIY 34 
SIY O23  O3  O 0 1 N N N N N N 16.794 22.861 -1.589 1.233  4.018  0.549  O23  SIY 35 
SIY O25  O4  O 0 1 N N N N N N 16.515 20.149 -2.565 0.767  0.429  1.294  O25  SIY 36 
SIY O28  O5  O 0 1 N N N N N N 15.223 21.524 -4.659 2.327  -0.588 3.389  O28  SIY 37 
SIY O30  O6  O 0 1 N N N N N N 14.262 19.089 -5.902 2.283  -3.312 2.522  O30  SIY 38 
SIY O32  O7  O 0 1 N N N N N N 15.403 16.657 -4.844 0.398  -3.908 0.453  O32  SIY 39 
SIY O35  O8  O 0 1 N N N N N N 18.706 17.013 -5.814 -2.986 -1.496 -0.032 O35  SIY 40 
SIY O41  O9  O 0 1 N N N N N N 17.997 19.193 -4.129 -1.035 -0.893 1.965  O41  SIY 41 
SIY H011 H1  H 0 0 N N N N N N 13.189 17.872 -1.349 -3.140 4.840  -0.155 H011 SIY 42 
SIY H012 H2  H 0 0 N N N N N N 14.801 17.588 -2.087 -3.143 5.097  1.606  H012 SIY 43 
SIY H013 H3  H 0 0 N N N N N N 14.351 16.750 -0.563 -1.637 5.301  0.680  H013 SIY 44 
SIY H021 H4  H 0 0 N N N N N N 14.759 19.769 -0.924 -1.648 3.140  1.895  H021 SIY 45 
SIY H033 H5  H 0 0 N N N N N N 14.613 19.923 1.547  -4.159 2.889  1.861  H033 SIY 46 
SIY H031 H6  H 0 0 N N N N N N 13.073 19.289 0.873  -4.047 2.462  0.137  H031 SIY 47 
SIY H032 H7  H 0 0 N N N N N N 14.242 18.169 1.651  -3.290 1.417  1.363  H032 SIY 48 
SIY H071 H8  H 0 0 N N N N N N 18.488 16.652 -0.647 -0.873 2.020  -3.377 H071 SIY 49 
SIY H092 H9  H 0 0 N N N N N N 16.739 17.507 1.788  -2.956 2.480  -1.653 H092 SIY 50 
SIY H091 H10 H 0 0 N N N N N N 16.300 16.432 0.417  -1.764 3.759  -2.039 H091 SIY 51 
SIY H101 H11 H 0 0 N N N N N N 20.899 18.324 -0.698 1.770  3.397  -1.384 H101 SIY 52 
SIY H103 H12 H 0 0 N N N N N N 19.617 18.013 -1.917 1.673  2.583  -2.964 H103 SIY 53 
SIY H102 H13 H 0 0 N N N N N N 20.069 19.701 -1.499 0.442  3.783  -2.504 H102 SIY 54 
SIY H111 H14 H 0 0 N N N N N N 20.119 18.673 1.657  0.414  -0.252 -2.074 H111 SIY 55 
SIY H131 H15 H 0 0 N N N N N N 16.907 20.684 1.456  2.897  0.174  1.021  H131 SIY 56 
SIY H141 H16 H 0 0 N N N N N N 17.231 23.020 2.758  4.352  1.072  -1.488 H141 SIY 57 
SIY H142 H17 H 0 0 N N N N N N 17.080 21.433 3.586  5.067  0.706  0.130  H142 SIY 58 
SIY H152 H18 H 0 0 N N N N N N 19.719 23.020 2.996  4.647  -1.248 -1.726 H152 SIY 59 
SIY H151 H19 H 0 0 N N N N N N 19.182 22.325 4.564  4.418  -1.546 0.023  H151 SIY 60 
SIY H161 H20 H 0 0 N N N N N N 19.541 20.042 3.841  2.168  -1.877 -0.333 H161 SIY 61 
SIY H171 H21 H 0 0 N N N N N N 21.638 19.908 2.479  1.292  -1.653 -2.728 H171 SIY 62 
SIY H172 H22 H 0 0 N N N N N N 21.463 21.656 2.103  2.910  -1.078 -3.195 H172 SIY 63 
SIY H193 H23 H 0 0 N N N N N N 23.704 21.560 4.941  1.575  -3.615 -4.162 H193 SIY 64 
SIY H192 H24 H 0 0 N N N N N N 23.683 20.345 3.617  3.193  -3.040 -4.630 H192 SIY 65 
SIY H191 H25 H 0 0 N N N N N N 23.519 22.093 3.235  2.998  -4.651 -3.897 H191 SIY 66 
SIY H201 H26 H 0 0 N N N N N N 17.500 23.241 0.862  3.564  2.203  1.587  H201 SIY 67 
SIY H212 H27 H 0 0 N N N N N N 19.984 22.755 0.844  3.286  3.098  -1.268 H212 SIY 68 
SIY H211 H28 H 0 0 N N N N N N 19.725 21.631 -0.533 3.327  4.269  0.071  H211 SIY 69 
SIY H213 H29 H 0 0 N N N N N N 19.364 23.380 -0.722 4.674  3.127  -0.154 H213 SIY 70 
SIY H221 H30 H 0 0 N N N N N N 15.896 21.696 -0.291 1.757  3.068  2.270  H221 SIY 71 
SIY H241 H31 H 0 0 N N N N N N 18.330 20.684 -2.153 -0.242 2.037  2.035  H241 SIY 72 
SIY H261 H32 H 0 0 N N N N N N 17.648 21.264 -3.882 -0.112 0.515  3.162  H261 SIY 73 
SIY H271 H33 H 0 0 N N N N N N 16.468 20.402 -5.885 0.663  -1.715 3.873  H271 SIY 74 
SIY H291 H34 H 0 0 N N N N N N 14.744 18.956 -3.845 1.934  -1.853 1.100  H291 SIY 75 
SIY H311 H35 H 0 0 N N N N N N 16.511 17.911 -6.070 -0.352 -3.464 2.327  H311 SIY 76 
SIY H331 H36 H 0 0 N N N N N N 16.949 17.703 -3.046 -0.349 -1.395 0.081  H331 SIY 77 
SIY H342 H37 H 0 0 N N N N N N 17.817 15.771 -4.401 -1.963 -3.283 -0.199 H342 SIY 78 
SIY H341 H38 H 0 0 N N N N N N 19.190 16.764 -3.805 -2.627 -2.928 1.414  H341 SIY 79 
SIY H371 H39 H 0 0 N N N N N N 20.039 17.288 -8.038 -5.232 -3.523 -1.482 H371 SIY 80 
SIY H373 H40 H 0 0 N N N N N N 20.174 15.536 -8.408 -3.711 -2.907 -2.173 H373 SIY 81 
SIY H372 H41 H 0 0 N N N N N N 18.557 16.313 -8.322 -3.674 -3.970 -0.746 H372 SIY 82 
SIY H381 H42 H 0 0 N N N N N N 21.468 17.002 -5.862 -6.109 -0.992 -1.283 H381 SIY 83 
SIY H391 H43 H 0 0 N N N N N N 22.523 15.092 -4.833 -3.408 0.385  -1.148 H391 SIY 84 
SIY H392 H44 H 0 0 N N N N N N 21.002 14.059 -5.178 -5.025 1.079  -1.784 H392 SIY 85 
SIY H403 H45 H 0 0 N N N N N N 18.771 14.332 -5.154 -5.084 -1.455 1.610  H403 SIY 86 
SIY H402 H46 H 0 0 N N N N N N 17.818 14.592 -6.654 -6.034 -2.675 0.727  H402 SIY 87 
SIY H401 H47 H 0 0 N N N N N N 19.435 13.814 -6.741 -4.476 -3.122 1.464  H401 SIY 88 
SIY H081 H48 H 0 0 N N N N N N 18.731 15.670 1.337  -2.422 0.305  -2.729 H081 SIY 89 
SIY H231 H49 H 0 0 N N N N N N 16.560 23.679 -1.167 0.400  4.400  0.859  H231 SIY 90 
SIY H281 H50 H 0 0 N N N N N N 15.788 22.284 -4.735 2.202  0.103  4.055  H281 SIY 91 
SIY H301 H51 H 0 0 N N N N N N 13.689 19.837 -5.776 3.129  -2.971 2.843  H301 SIY 92 
SIY H321 H52 H 0 0 N N N N N N 15.984 15.921 -4.996 0.988  -4.624 0.723  H321 SIY 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SIY C37 C36  SING N N 1  
SIY C36 C40  SING N N 2  
SIY C36 O35  SING N N 3  
SIY C36 C38  SING N N 4  
SIY O30 C29  SING N N 5  
SIY O35 C34  SING N N 6  
SIY C38 C39  DOUB N N 7  
SIY C31 O32  SING N N 8  
SIY C31 C29  SING N N 9  
SIY C31 C33  SING N N 10 
SIY C27 C29  SING N N 11 
SIY C27 O28  SING N N 12 
SIY C27 C26  SING N N 13 
SIY C34 C33  SING N N 14 
SIY O41 C33  SING N N 15 
SIY O41 C26  SING N N 16 
SIY C26 O25  SING N N 17 
SIY O25 C24  SING N N 18 
SIY C24 C22  SING N N 19 
SIY C24 C05  SING N N 20 
SIY O23 C22  SING N N 21 
SIY C01 C02  SING N N 22 
SIY C10 C06  SING N N 23 
SIY C22 C20  SING N N 24 
SIY C05 C04  DOUB N N 25 
SIY C05 C06  SING N N 26 
SIY C02 C04  SING N N 27 
SIY C02 C03  SING N N 28 
SIY C04 C09  SING N N 29 
SIY C21 C20  SING N N 30 
SIY C06 C07  SING N N 31 
SIY C06 C11  SING N N 32 
SIY C07 C09  SING N N 33 
SIY C07 O08  SING N N 34 
SIY C20 C13  SING N N 35 
SIY C11 C12  DOUB N E 36 
SIY C13 C12  SING N N 37 
SIY C13 C14  SING N N 38 
SIY C12 C16  SING N N 39 
SIY C17 C16  SING N N 40 
SIY C17 O18  SING N N 41 
SIY C14 C15  SING N N 42 
SIY C16 C15  SING N N 43 
SIY C19 O18  SING N N 44 
SIY C01 H011 SING N N 45 
SIY C01 H012 SING N N 46 
SIY C01 H013 SING N N 47 
SIY C02 H021 SING N N 48 
SIY C03 H033 SING N N 49 
SIY C03 H031 SING N N 50 
SIY C03 H032 SING N N 51 
SIY C07 H071 SING N N 52 
SIY C09 H092 SING N N 53 
SIY C09 H091 SING N N 54 
SIY C10 H101 SING N N 55 
SIY C10 H103 SING N N 56 
SIY C10 H102 SING N N 57 
SIY C11 H111 SING N N 58 
SIY C13 H131 SING N N 59 
SIY C14 H141 SING N N 60 
SIY C14 H142 SING N N 61 
SIY C15 H152 SING N N 62 
SIY C15 H151 SING N N 63 
SIY C16 H161 SING N N 64 
SIY C17 H171 SING N N 65 
SIY C17 H172 SING N N 66 
SIY C19 H193 SING N N 67 
SIY C19 H192 SING N N 68 
SIY C19 H191 SING N N 69 
SIY C20 H201 SING N N 70 
SIY C21 H212 SING N N 71 
SIY C21 H211 SING N N 72 
SIY C21 H213 SING N N 73 
SIY C22 H221 SING N N 74 
SIY C24 H241 SING N N 75 
SIY C26 H261 SING N N 76 
SIY C27 H271 SING N N 77 
SIY C29 H291 SING N N 78 
SIY C31 H311 SING N N 79 
SIY C33 H331 SING N N 80 
SIY C34 H342 SING N N 81 
SIY C34 H341 SING N N 82 
SIY C37 H371 SING N N 83 
SIY C37 H373 SING N N 84 
SIY C37 H372 SING N N 85 
SIY C38 H381 SING N N 86 
SIY C39 H391 SING N N 87 
SIY C39 H392 SING N N 88 
SIY C40 H403 SING N N 89 
SIY C40 H402 SING N N 90 
SIY C40 H401 SING N N 91 
SIY O08 H081 SING N N 92 
SIY O23 H231 SING N N 93 
SIY O28 H281 SING N N 94 
SIY O30 H301 SING N N 95 
SIY O32 H321 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SIY InChI            InChI                1.06  "InChI=1S/C32H52O9/c1-9-31(5,6)39-15-22-26(35)27(36)28(37)30(40-22)41-29-24-20(16(2)3)12-23(33)32(24,7)13-21-18(14-38-8)10-11-19(21)17(4)25(29)34/h9,13,16-19,22-23,25-30,33-37H,1,10-12,14-15H2,2-8H3/b21-13-/t17-,18-,19+,22-,23+,25-,26-,27+,28-,29-,30-,32+/m1/s1" 
SIY InChIKey         InChI                1.06  FEQSXXYJWMCXJX-FMYGVZKHSA-N                                                                                                                                                                                                                                            
SIY SMILES_CANONICAL CACTVS               3.385 "COC[C@H]1CC[C@H]\2[C@@H](C)[C@@H](O)[C@H](O[C@H]3O[C@H](COC(C)(C)C=C)[C@@H](O)[C@H](O)[C@H]3O)C4=C(C[C@H](O)[C@]4(C)\C=C1\2)C(C)C"                                                                                                                                    
SIY SMILES           CACTVS               3.385 "COC[CH]1CC[CH]2[CH](C)[CH](O)[CH](O[CH]3O[CH](COC(C)(C)C=C)[CH](O)[CH](O)[CH]3O)C4=C(C[CH](O)[C]4(C)C=C12)C(C)C"                                                                                                                                                      
SIY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H]\2CC[C@@H](/C2=C/[C@]3([C@H](CC(=C3[C@H]([C@@H]1O)O[C@@H]4[C@@H]([C@H]([C@@H]([C@H](O4)COC(C)(C)C=C)O)O)O)C(C)C)O)C)COC"                                                                                                                                
SIY SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C2CCC(C2=CC3(C(CC(=C3C(C1O)OC4C(C(C(C(O4)COC(C)(C)C=C)O)O)O)C(C)C)O)C)COC"                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           SIY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[[(1~{E},3~{R},4~{S},8~{R},9~{R},10~{R},11~{S},14~{S})-14-(methoxymethyl)-3,10-dimethyl-4,9-bis(oxidanyl)-6-propan-2-yl-8-tricyclo[9.3.0.0^{3,7}]tetradeca-1,6-dienyl]oxy]-6-(2-methylbut-3-en-2-yloxymethyl)oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SIY "Create component" 2022-12-15 PDBE 
SIY "Modify formula"   2023-05-15 PDBE 
SIY "Initial release"  2024-06-26 RCSB 
# 
