data_S9Y
#

_chem_comp.id                                   S9Y
_chem_comp.name                                 "2-[[(2~{S})-2-decanoyloxypropoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H39 N O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-03-06
_chem_comp.pdbx_modified_date                   2020-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       396.479
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S9Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UZA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S9Y  C3   C1   C  0  1  N  N  N  149.262  179.562  153.559  -1.192  -2.639   1.974  C3   S9Y   1  
S9Y  C2   C2   C  0  1  N  N  S  148.477  178.524  154.347  -0.828  -2.657   0.488  C2   S9Y   2  
S9Y  C1   C3   C  0  1  N  N  N  148.394  179.008  155.830  -2.105  -2.589  -0.350  C1   S9Y   3  
S9Y  O3P  O1   O  0  1  N  N  N  147.710  180.221  155.871  -2.869  -1.445   0.035  O3P  S9Y   4  
S9Y  P    P1   P  0  1  N  N  N  147.680  181.193  157.250  -4.278  -1.061  -0.642  P    S9Y   5  
S9Y  O2   O2   O  0  1  N  N  N  147.139  178.404  153.840   0.013  -1.513   0.182  O2   S9Y   6  
S9Y  C31  C4   C  0  1  N  N  N  146.752  177.239  153.232   1.339  -1.683   0.300  C31  S9Y   7  
S9Y  O31  O3   O  0  1  N  N  N  147.285  176.194  153.557   1.783  -2.752   0.647  O31  S9Y   8  
S9Y  C32  C5   C  0  1  N  N  N  145.656  177.360  152.173   2.275  -0.541  -0.001  C32  S9Y   9  
S9Y  C33  C6   C  0  1  N  N  N  145.548  176.136  151.218   3.720  -0.997   0.210  C33  S9Y  10  
S9Y  C34  C7   C  0  1  N  N  N  144.793  176.384  149.886   4.670   0.163  -0.096  C34  S9Y  11  
S9Y  C35  C8   C  0  1  N  N  N  145.483  175.807  148.619   6.116  -0.292   0.115  C35  S9Y  12  
S9Y  C36  C9   C  0  1  N  N  N  145.186  176.567  147.302   7.066   0.867  -0.191  C36  S9Y  13  
S9Y  C37  C10  C  0  1  N  N  N  146.398  176.748  146.365   8.511   0.412   0.020  C37  S9Y  14  
S9Y  C38  C11  C  0  1  N  N  N  146.357  178.037  145.525   9.461   1.572  -0.286  C38  S9Y  15  
S9Y  C39  C12  C  0  1  N  N  N  147.746  178.647  145.317  10.906   1.116  -0.075  C39  S9Y  16  
S9Y  C40  C13  C  0  1  N  N  N  147.713  180.121  144.937  11.856   2.276  -0.381  C40  S9Y  17  
S9Y  O1   O4   O  0  1  N  N  N  147.194  180.367  158.382  -4.046  -0.691  -2.191  O1   S9Y  18  
S9Y  O4   O5   O  0  1  N  N  N  148.823  182.134  157.190  -5.202  -2.214  -0.543  O4   S9Y  19  
S9Y  O5   O6   O  0  1  N  N  N  146.351  182.404  157.207  -4.915   0.204   0.123  O5   S9Y  20  
S9Y  C4   C14  C  0  1  N  N  N  145.084  181.956  157.392  -6.214   0.721  -0.175  C4   S9Y  21  
S9Y  C5   C15  C  0  1  N  N  N  144.230  183.205  157.791  -6.506   1.919   0.731  C5   S9Y  22  
S9Y  N1   N1   N  1  1  N  N  N  142.744  183.076  157.403  -5.596   3.022   0.394  N1   S9Y  23  
S9Y  C6   C16  C  0  1  N  N  N  142.602  182.734  155.943  -5.963   4.214   1.169  C6   S9Y  24  
S9Y  C7   C17  C  0  1  N  N  N  142.092  181.966  158.204  -4.216   2.634   0.715  C7   S9Y  25  
S9Y  C8   C18  C  0  1  N  N  N  141.992  184.357  157.698  -5.700   3.320  -1.041  C8   S9Y  26  
S9Y  H1   H1   H  0  1  N  N  N  150.282  179.637  153.964  -1.730  -1.720   2.205  H1   S9Y  27  
S9Y  H2   H2   H  0  1  N  N  N  149.309  179.261  152.502  -1.823  -3.497   2.204  H2   S9Y  28  
S9Y  H3   H3   H  0  1  N  N  N  148.763  180.539  153.641  -0.282  -2.687   2.572  H3   S9Y  29  
S9Y  H4   H4   H  0  1  N  N  N  149.000  177.557  154.311  -0.289  -3.576   0.257  H4   S9Y  30  
S9Y  H5   H5   H  0  1  N  N  N  147.857  178.261  156.433  -1.844  -2.513  -1.406  H5   S9Y  31  
S9Y  H6   H6   H  0  1  N  N  N  149.409  179.143  156.232  -2.695  -3.491  -0.187  H6   S9Y  32  
S9Y  H7   H7   H  0  1  N  N  N  145.862  178.254  151.565   2.141  -0.224  -1.035  H7   S9Y  33  
S9Y  H8   H8   H  0  1  N  N  N  144.692  177.481  152.688   2.056   0.293   0.665  H8   S9Y  34  
S9Y  H9   H9   H  0  1  N  N  N  145.026  175.332  151.757   3.855  -1.313   1.244  H9   S9Y  35  
S9Y  H10  H10  H  0  1  N  N  N  146.569  175.809  150.971   3.939  -1.831  -0.457  H10  S9Y  36  
S9Y  H11  H11  H  0  1  N  N  N  144.688  177.471  149.751   4.536   0.480  -1.130  H11  S9Y  37  
S9Y  H12  H12  H  0  1  N  N  N  143.796  175.926  149.969   4.452   0.998   0.571  H12  S9Y  38  
S9Y  H13  H13  H  0  1  N  N  N  145.149  174.766  148.494   6.250  -0.609   1.149  H13  S9Y  39  
S9Y  H14  H14  H  0  1  N  N  N  146.570  175.826  148.785   6.334  -1.127  -0.552  H14  S9Y  40  
S9Y  H15  H15  H  0  1  N  N  N  144.805  177.565  147.563   6.932   1.184  -1.225  H15  S9Y  41  
S9Y  H16  H16  H  0  1  N  N  N  144.412  176.010  146.754   6.847   1.702   0.475  H16  S9Y  42  
S9Y  H17  H17  H  0  1  N  N  N  146.435  175.889  145.678   8.645   0.095   1.054  H17  S9Y  43  
S9Y  H18  H18  H  0  1  N  N  N  147.310  176.765  146.980   8.730  -0.422  -0.647  H18  S9Y  44  
S9Y  H19  H19  H  0  1  N  N  N  145.722  178.773  146.040   9.327   1.888  -1.320  H19  S9Y  45  
S9Y  H20  H20  H  0  1  N  N  N  145.924  177.803  144.541   9.242   2.406   0.380  H20  S9Y  46  
S9Y  H21  H21  H  0  1  N  N  N  148.253  178.092  144.514  11.040   0.799   0.959  H21  S9Y  47  
S9Y  H22  H22  H  0  1  N  N  N  148.316  178.541  146.252  11.125   0.282  -0.742  H22  S9Y  48  
S9Y  H23  H23  H  0  1  N  N  N  148.741  180.489  144.805  11.722   2.592  -1.416  H23  S9Y  49  
S9Y  H24  H24  H  0  1  N  N  N  147.155  180.245  143.997  11.638   3.110   0.285  H24  S9Y  50  
S9Y  H25  H25  H  0  1  N  N  N  147.218  180.694  145.735  12.886   1.951  -0.231  H25  S9Y  51  
S9Y  H26  H26  H  0  1  N  N  N  147.744  180.516  159.142  -3.449   0.057  -2.332  H26  S9Y  52  
S9Y  H27  H27  H  0  1  N  N  N  144.698  181.512  156.463  -6.248   1.037  -1.217  H27  S9Y  53  
S9Y  H28  H28  H  0  1  N  N  N  145.059  181.205  158.196  -6.961  -0.054  -0.005  H28  S9Y  54  
S9Y  H29  H29  H  0  1  N  N  N  144.296  183.340  158.881  -7.537   2.241   0.586  H29  S9Y  55  
S9Y  H30  H30  H  0  1  N  N  N  144.647  184.089  157.286  -6.358   1.631   1.772  H30  S9Y  56  
S9Y  H31  H31  H  0  1  N  N  N  143.148  181.804  155.729  -6.987   4.501   0.930  H31  S9Y  57  
S9Y  H32  H32  H  0  1  N  N  N  141.538  182.598  155.700  -5.887   3.993   2.234  H32  S9Y  58  
S9Y  H33  H33  H  0  1  N  N  N  143.016  183.551  155.333  -5.288   5.032   0.918  H33  S9Y  59  
S9Y  H34  H34  H  0  1  N  N  N  142.180  182.188  159.278  -3.569   3.509   0.652  H34  S9Y  60  
S9Y  H35  H35  H  0  1  N  N  N  141.029  181.892  157.931  -4.179   2.227   1.725  H35  S9Y  61  
S9Y  H36  H36  H  0  1  N  N  N  142.594  181.012  157.985  -3.876   1.879   0.006  H36  S9Y  62  
S9Y  H37  H37  H  0  1  N  N  N  142.096  184.607  158.764  -6.723   3.607  -1.280  H37  S9Y  63  
S9Y  H38  H38  H  0  1  N  N  N  142.406  185.174  157.088  -5.025   4.138  -1.292  H38  S9Y  64  
S9Y  H39  H39  H  0  1  N  N  N  140.928  184.221  157.455  -5.427   2.435  -1.617  H39  S9Y  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S9Y  C40  C39  SING  N  N   1  
S9Y  C39  C38  SING  N  N   2  
S9Y  C38  C37  SING  N  N   3  
S9Y  C37  C36  SING  N  N   4  
S9Y  C36  C35  SING  N  N   5  
S9Y  C35  C34  SING  N  N   6  
S9Y  C34  C33  SING  N  N   7  
S9Y  C33  C32  SING  N  N   8  
S9Y  C32  C31  SING  N  N   9  
S9Y  C31  O31  DOUB  N  N  10  
S9Y  C31  O2   SING  N  N  11  
S9Y  C3   C2   SING  N  N  12  
S9Y  O2   C2   SING  N  N  13  
S9Y  C2   C1   SING  N  N  14  
S9Y  C1   O3P  SING  N  N  15  
S9Y  O3P  P    SING  N  N  16  
S9Y  C6   N1   SING  N  N  17  
S9Y  O4   P    DOUB  N  N  18  
S9Y  O5   P    SING  N  N  19  
S9Y  O5   C4   SING  N  N  20  
S9Y  P    O1   SING  N  N  21  
S9Y  C4   C5   SING  N  N  22  
S9Y  N1   C8   SING  N  N  23  
S9Y  N1   C5   SING  N  N  24  
S9Y  N1   C7   SING  N  N  25  
S9Y  C3   H1   SING  N  N  26  
S9Y  C3   H2   SING  N  N  27  
S9Y  C3   H3   SING  N  N  28  
S9Y  C2   H4   SING  N  N  29  
S9Y  C1   H5   SING  N  N  30  
S9Y  C1   H6   SING  N  N  31  
S9Y  C32  H7   SING  N  N  32  
S9Y  C32  H8   SING  N  N  33  
S9Y  C33  H9   SING  N  N  34  
S9Y  C33  H10  SING  N  N  35  
S9Y  C34  H11  SING  N  N  36  
S9Y  C34  H12  SING  N  N  37  
S9Y  C35  H13  SING  N  N  38  
S9Y  C35  H14  SING  N  N  39  
S9Y  C36  H15  SING  N  N  40  
S9Y  C36  H16  SING  N  N  41  
S9Y  C37  H17  SING  N  N  42  
S9Y  C37  H18  SING  N  N  43  
S9Y  C38  H19  SING  N  N  44  
S9Y  C38  H20  SING  N  N  45  
S9Y  C39  H21  SING  N  N  46  
S9Y  C39  H22  SING  N  N  47  
S9Y  C40  H23  SING  N  N  48  
S9Y  C40  H24  SING  N  N  49  
S9Y  C40  H25  SING  N  N  50  
S9Y  O1   H26  SING  N  N  51  
S9Y  C4   H27  SING  N  N  52  
S9Y  C4   H28  SING  N  N  53  
S9Y  C5   H29  SING  N  N  54  
S9Y  C5   H30  SING  N  N  55  
S9Y  C6   H31  SING  N  N  56  
S9Y  C6   H32  SING  N  N  57  
S9Y  C6   H33  SING  N  N  58  
S9Y  C7   H34  SING  N  N  59  
S9Y  C7   H35  SING  N  N  60  
S9Y  C7   H36  SING  N  N  61  
S9Y  C8   H37  SING  N  N  62  
S9Y  C8   H38  SING  N  N  63  
S9Y  C8   H39  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S9Y  InChI             InChI                 1.03   "InChI=1S/C18H38NO6P/c1-6-7-8-9-10-11-12-13-18(20)25-17(2)16-24-26(21,22)23-15-14-19(3,4)5/h17H,6-16H2,1-5H3/p+1/t17-/m0/s1"  
S9Y  InChIKey          InChI                 1.03   QDKXDMCUNRVOEC-KRWDZBQOSA-O  
S9Y  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCC(=O)O[C@@H](C)CO[P](O)(=O)OCC[N+](C)(C)C"  
S9Y  SMILES            CACTVS                3.385  "CCCCCCCCCC(=O)O[CH](C)CO[P](O)(=O)OCC[N+](C)(C)C"  
S9Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCC(=O)O[C@@H](C)COP(=O)(O)OCC[N+](C)(C)C"  
S9Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCC(=O)OC(C)COP(=O)(O)OCC[N+](C)(C)C"  
#
_pdbx_chem_comp_identifier.comp_id          S9Y
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[(2~{S})-2-decanoyloxypropoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S9Y  "Create component"  2020-03-06  RCSB  
S9Y  "Initial release"   2020-03-18  RCSB  
##
