data_S6Y
#

_chem_comp.id                                   S6Y
_chem_comp.name                                 "6-(2-methylpropyl)-2-oxidanylidene-5~{H}-pyrimidine-4-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-05
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       196.203
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S6Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W0T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S6Y  N1   N1   N  0  1  N  N  N  4.182   5.712  13.836  -0.855   0.909  -0.161  N1   S6Y   1  
S6Y  C2   C1   C  0  1  N  N  N  6.636   4.754  14.494   1.627  -0.198  -0.012  C2   S6Y   2  
S6Y  C3   C2   C  0  1  N  N  N  6.085   5.803  15.244   0.519  -0.997  -0.034  C3   S6Y   3  
S6Y  C4   C3   C  0  1  N  N  N  4.816   6.278  14.881  -0.750  -0.399  -0.110  C4   S6Y   4  
S6Y  C5   C4   C  0  1  N  N  N  4.055   7.403  15.562  -1.988  -1.258  -0.134  C5   S6Y   5  
S6Y  C7   C5   C  0  1  N  N  N  4.093   9.600  16.723  -4.476  -1.235  -0.369  C7   S6Y   6  
S6Y  C8   C6   C  0  1  N  N  N  4.853   7.554  17.924  -3.340   0.475   1.056  C8   S6Y   7  
S6Y  C9   C7   C  0  1  N  N  N  4.732   4.714  13.125   0.231   1.691  -0.141  C9   S6Y   8  
S6Y  O3   O1   O  0  1  N  N  N  4.093   4.240  12.165   0.100   2.902  -0.189  O3   S6Y   9  
S6Y  N2   N2   N  0  1  N  N  N  5.953   4.227  13.442   1.466   1.161  -0.067  N2   S6Y  10  
S6Y  C1   C8   C  0  1  N  N  N  7.986   4.193  14.811   2.983  -0.792   0.069  C1   S6Y  11  
S6Y  O2   O2   O  0  1  N  N  N  8.171   3.513  15.844   4.068   0.005   0.089  O2   S6Y  12  
S6Y  O1   O3   O  0  1  N  N  N  8.920   4.399  14.013   3.115  -1.998   0.116  O1   S6Y  13  
S6Y  C6   C9   C  0  1  N  N  N  4.799   8.256  16.576  -3.227  -0.363  -0.219  C6   S6Y  14  
S6Y  H1   H1   H  0  1  N  N  N  6.622   6.233  16.077   0.617  -2.072   0.007  H1   S6Y  15  
S6Y  H3   H3   H  0  1  N  N  N  3.691   8.077  14.772  -1.957  -1.918  -1.001  H3   S6Y  16  
S6Y  H4   H4   H  0  1  N  N  N  3.198   6.950  16.082  -2.034  -1.855   0.776  H4   S6Y  17  
S6Y  H5   H5   H  0  1  N  N  N  4.630  10.219  17.457  -4.563  -1.895   0.494  H5   S6Y  18  
S6Y  H6   H6   H  0  1  N  N  N  4.078  10.114  15.751  -5.358  -0.598  -0.430  H6   S6Y  19  
S6Y  H7   H7   H  0  1  N  N  N  3.061   9.436  17.067  -4.396  -1.832  -1.277  H7   S6Y  20  
S6Y  H8   H8   H  0  1  N  N  N  5.394   8.184  18.645  -2.450   1.095   1.162  H8   S6Y  21  
S6Y  H9   H9   H  0  1  N  N  N  3.830   7.378  18.287  -4.222   1.112   0.995  H9   S6Y  22  
S6Y  H10  H10  H  0  1  N  N  N  5.374   6.591  17.815  -3.427  -0.186   1.918  H10  S6Y  23  
S6Y  H11  H11  H  0  1  N  N  N  9.076   3.225  15.876   4.931  -0.429   0.142  H11  S6Y  24  
S6Y  H12  H12  H  0  1  N  N  N  5.825   8.427  16.218  -3.139   0.297  -1.082  H12  S6Y  25  
S6Y  H2   H2   H  0  1  N  N  N  6.352   3.483  12.906   2.243   1.742  -0.053  H2   S6Y  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S6Y  O3  C9   DOUB  N  N   1  
S6Y  C9  N2   SING  N  N   2  
S6Y  C9  N1   SING  N  N   3  
S6Y  N2  C2   SING  N  N   4  
S6Y  N1  C4   DOUB  N  N   5  
S6Y  O1  C1   DOUB  N  N   6  
S6Y  C2  C1   SING  N  N   7  
S6Y  C2  C3   DOUB  N  N   8  
S6Y  C1  O2   SING  N  N   9  
S6Y  C4  C3   SING  N  N  10  
S6Y  C4  C5   SING  N  N  11  
S6Y  C5  C6   SING  N  N  12  
S6Y  C6  C7   SING  N  N  13  
S6Y  C6  C8   SING  N  N  14  
S6Y  C3  H1   SING  N  N  15  
S6Y  C5  H3   SING  N  N  16  
S6Y  C5  H4   SING  N  N  17  
S6Y  C7  H5   SING  N  N  18  
S6Y  C7  H6   SING  N  N  19  
S6Y  C7  H7   SING  N  N  20  
S6Y  C8  H8   SING  N  N  21  
S6Y  C8  H9   SING  N  N  22  
S6Y  C8  H10  SING  N  N  23  
S6Y  O2  H11  SING  N  N  24  
S6Y  C6  H12  SING  N  N  25  
S6Y  N2  H2   SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S6Y  InChI             InChI                 1.03   "InChI=1S/C9H12N2O3/c1-5(2)3-6-4-7(8(12)13)11-9(14)10-6/h4-5H,3H2,1-2H3,(H,12,13)(H,10,11,14)"  
S6Y  InChIKey          InChI                 1.03   WDIFSCKLWBVBLR-UHFFFAOYSA-N  
S6Y  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CC1=NC(=O)NC(=C1)C(O)=O"  
S6Y  SMILES            CACTVS                3.385  "CC(C)CC1=NC(=O)NC(=C1)C(O)=O"  
S6Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)CC1=NC(=O)NC(=C1)C(=O)O"  
S6Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC1=NC(=O)NC(=C1)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          S6Y
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-(2-methylpropyl)-2-oxidanylidene-1~{H}-pyrimidine-6-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S6Y  "Create component"  2020-03-05  RCSB  
S6Y  "Initial release"   2021-01-13  RCSB  
##
