data_S5Y
# 
_chem_comp.id                                    S5Y 
_chem_comp.name                                  "2-(2-ethoxyethoxy)ethanethiol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H14 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-03-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        150.239 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S5Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6W0R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S5Y C1  C1  C 0 1 N N N N N N 17.726 -28.503 11.862 3.873  -0.286 0.277  C1  S5Y 1  
S5Y C2  C2  C 0 1 N N N N N N 17.607 -26.304 12.826 2.028  1.243  0.243  C2  S5Y 2  
S5Y C3  C3  C 0 1 N N N N N N 16.847 -25.050 12.427 0.615  1.428  -0.316 C3  S5Y 3  
S5Y C4  C4  C 0 1 N N N N N N 15.255 -24.535 10.726 -1.603 0.526  -0.212 C4  S5Y 4  
S5Y C5  C5  C 0 1 N N N N N N 14.033 -24.555 11.608 -2.437 -0.572 0.452  C5  S5Y 5  
S5Y S   S1  S 0 1 N N N N N N 14.239 -23.276 12.874 -4.152 -0.465 -0.130 S   S5Y 6  
S5Y O1  O1  O 0 1 N N N N N N 16.247 -25.428 11.205 -0.252 0.441  0.247  O1  S5Y 7  
S5Y O   O2  O 0 1 N N N N N N 16.973 -27.321 12.063 2.551  -0.014 -0.192 O   S5Y 8  
S5Y C   C6  C 0 1 N N N N N N 16.856 -29.377 10.970 4.330  -1.649 -0.247 C   S5Y 9  
S5Y H1  H1  H 0 1 N N N N N N 17.922 -29.004 12.821 4.553  0.487  -0.082 H1  S5Y 10 
S5Y H2  H2  H 0 1 N N N N N N 18.681 -28.274 11.366 3.877  -0.296 1.367  H2  S5Y 11 
S5Y H3  H3  H 0 1 N N N N N N 17.508 -26.499 13.904 2.669  2.048  -0.117 H3  S5Y 12 
S5Y H4  H4  H 0 1 N N N N N N 18.672 -26.220 12.565 1.993  1.265  1.332  H4  S5Y 13 
S5Y H5  H5  H 0 1 N N N N N N 17.530 -24.199 12.287 0.250  2.422  -0.059 H5  S5Y 14 
S5Y H6  H6  H 0 1 N N N N N N 16.087 -24.790 13.179 0.636  1.317  -1.400 H6  S5Y 15 
S5Y H7  H7  H 0 1 N N N N N N 15.668 -23.516 10.708 -1.628 0.397  -1.294 H7  S5Y 16 
S5Y H8  H8  H 0 1 N N N N N N 14.967 -24.832 9.707  -2.014 1.502  0.047  H8  S5Y 17 
S5Y H9  H9  H 0 1 N N N N N N 13.135 -24.346 11.008 -2.026 -1.547 0.193  H9  S5Y 18 
S5Y H10 H10 H 0 1 N N N N N N 13.933 -25.541 12.086 -2.412 -0.443 1.534  H10 S5Y 19 
S5Y H11 H11 H 0 1 N N N N N N 13.140 -23.393 13.558 -4.757 -1.471 0.525  H11 S5Y 20 
S5Y H12 H12 H 0 1 N N N N N N 17.376 -30.325 10.765 3.650  -2.422 0.112  H12 S5Y 21 
S5Y H13 H13 H 0 1 N N N N N N 15.902 -29.584 11.478 4.326  -1.639 -1.337 H13 S5Y 22 
S5Y H14 H14 H 0 1 N N N N N N 16.661 -28.854 10.022 5.338  -1.857 0.111  H14 S5Y 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S5Y C4 O1  SING N N 1  
S5Y C4 C5  SING N N 2  
S5Y C  C1  SING N N 3  
S5Y O1 C3  SING N N 4  
S5Y C5 S   SING N N 5  
S5Y C1 O   SING N N 6  
S5Y O  C2  SING N N 7  
S5Y C3 C2  SING N N 8  
S5Y C1 H1  SING N N 9  
S5Y C1 H2  SING N N 10 
S5Y C2 H3  SING N N 11 
S5Y C2 H4  SING N N 12 
S5Y C3 H5  SING N N 13 
S5Y C3 H6  SING N N 14 
S5Y C4 H7  SING N N 15 
S5Y C4 H8  SING N N 16 
S5Y C5 H9  SING N N 17 
S5Y C5 H10 SING N N 18 
S5Y S  H11 SING N N 19 
S5Y C  H12 SING N N 20 
S5Y C  H13 SING N N 21 
S5Y C  H14 SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S5Y InChI            InChI                1.03  InChI=1S/C6H14O2S/c1-2-7-3-4-8-5-6-9/h9H,2-6H2,1H3 
S5Y InChIKey         InChI                1.03  LIAMZAFGRCLLJR-UHFFFAOYSA-N                        
S5Y SMILES_CANONICAL CACTVS               3.385 CCOCCOCCS                                          
S5Y SMILES           CACTVS               3.385 CCOCCOCCS                                          
S5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCOCCOCCS                                          
S5Y SMILES           "OpenEye OEToolkits" 2.0.7 CCOCCOCCS                                          
# 
_pdbx_chem_comp_identifier.comp_id           S5Y 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(2-ethoxyethoxy)ethanethiol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S5Y "Create component" 2020-03-04 RCSB 
S5Y "Initial release"  2020-09-23 RCSB 
S5Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S5Y 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
