data_S1Y
# 
_chem_comp.id                                    S1Y 
_chem_comp.name                                  "[(2S,3R)-1-{[(4S)-1-(2-aminoethyl)azepan-4-yl]carbamoyl}-2-formylpyrrolidin-3-yl]sulfamic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H27 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.460 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S1Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3S1Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S1Y S1   S1   S 0 1 N N N N N N 1.323  9.926  17.792 -5.784 0.017  -0.647 S1   S1Y 1  
S1Y O2   O2   O 0 1 N N N N N N 1.068  10.355 16.522 -6.063 -0.365 -1.987 O2   S1Y 2  
S1Y O3   O3   O 0 1 N N N N N N 0.516  10.883 18.768 -6.237 1.464  -0.509 O3   S1Y 3  
S1Y O4   O4   O 0 1 N N N N N N 1.015  8.606  17.931 -6.300 -0.674 0.482  O4   S1Y 4  
S1Y N5   N5   N 0 1 N N N N N N 2.927  9.987  18.136 -4.135 0.003  -0.490 N5   S1Y 5  
S1Y C6   C6   C 0 1 N N R N N N 3.332  11.404 18.423 -3.517 0.387  0.781  C6   S1Y 6  
S1Y C7   C7   C 0 1 N N N N N N 3.224  12.292 17.161 -2.971 1.837  0.711  C7   S1Y 7  
S1Y C8   C8   C 0 1 N N N N N N 4.354  13.273 17.317 -1.596 1.619  0.031  C8   S1Y 8  
S1Y N9   N9   N 0 1 N N N N N N 5.333  12.540 18.072 -1.098 0.347  0.586  N9   S1Y 9  
S1Y C10  C10  C 0 1 N N S N N N 4.829  11.317 18.611 -2.246 -0.449 1.044  C10  S1Y 10 
S1Y C11  C11  C 0 1 N N N N N N 5.310  10.133 17.811 -2.314 -1.741 0.273  C11  S1Y 11 
S1Y O12  O12  O 0 1 N N N N N N 5.514  10.186 16.606 -2.374 -2.794 0.862  O12  S1Y 12 
S1Y C13  C13  C 0 1 N N N N N N 6.662  12.729 18.100 0.195  -0.024 0.661  C13  S1Y 13 
S1Y O14  O14  O 0 1 N N N N N N 7.417  11.935 18.559 0.491  -1.102 1.140  O14  S1Y 14 
S1Y N15  N15  N 0 1 N N N N N N 7.158  14.015 17.763 1.160  0.798  0.204  N15  S1Y 15 
S1Y C16  C16  C 0 1 N N S N N N 8.608  14.240 17.776 2.566  0.394  0.285  C16  S1Y 16 
S1Y C17  C17  C 0 1 N N N N N N 8.926  14.451 16.296 2.923  -0.434 -0.919 C17  S1Y 17 
S1Y C18  C18  C 0 1 N N N N N N 10.424 14.703 16.175 3.991  -1.506 -0.620 C18  S1Y 18 
S1Y C19  C19  C 0 1 N N N N N N 10.779 16.165 16.336 5.118  -0.972 0.285  C19  S1Y 19 
S1Y N20  N20  N 0 1 N N N N N N 10.486 16.801 17.624 5.512  0.367  -0.078 N20  S1Y 20 
S1Y C21  C21  C 0 1 N N N N N N 12.010 17.184 17.816 6.969  0.532  0.022  C21  S1Y 21 
S1Y C22  C22  C 0 1 N N N N N N 13.000 16.231 17.007 7.655  -0.346 -1.027 C22  S1Y 22 
S1Y N23  N23  N 0 1 N N N N N N 14.253 16.097 17.828 9.111  -0.181 -0.927 N23  S1Y 23 
S1Y C24  C24  C 0 1 N N N N N N 10.229 15.884 18.769 4.809  1.339  0.785  C24  S1Y 24 
S1Y C25  C25  C 0 1 N N N N N N 8.757  15.455 18.675 3.465  1.650  0.312  C25  S1Y 25 
S1Y HO3  HO3  H 0 1 N N N N N N 0.043  11.530 18.258 -7.194 1.585  -0.586 HO3  S1Y 26 
S1Y HN5  HN5  H 0 1 N N N N N N 3.116  9.419  18.937 -3.579 -0.259 -1.240 HN5  S1Y 27 
S1Y H6   H6   H 0 1 N N N N N N 2.724  11.803 19.248 -4.227 0.278  1.602  H6   S1Y 28 
S1Y H7   H7   H 0 1 N N N N N N 3.331  11.698 16.241 -3.615 2.467  0.097  H7   S1Y 29 
S1Y H7A  H7A  H 0 1 N N N N N N 2.251  12.804 17.112 -2.851 2.259  1.709  H7A  S1Y 30 
S1Y H8   H8   H 0 1 N N N N N N 4.751  13.589 16.341 -1.715 1.541  -1.049 H8   S1Y 31 
S1Y H8A  H8A  H 0 1 N N N N N N 4.030  14.180 17.849 -0.916 2.434  0.281  H8A  S1Y 32 
S1Y H10  H10  H 0 1 N N N N N N 5.151  11.187 19.655 -2.153 -0.655 2.110  H10  S1Y 33 
S1Y H11  H11  H 0 1 N N N N N N 5.482  9.198  18.324 -2.309 -1.727 -0.807 H11  S1Y 34 
S1Y HN15 HN15 H 0 0 N N N N N N 6.530  14.755 17.521 0.924  1.658  -0.178 HN15 S1Y 35 
S1Y H16  H16  H 0 1 N N N N N N 9.285  13.461 18.158 2.727  -0.189 1.192  H16  S1Y 36 
S1Y H17  H17  H 0 1 N N N N N N 8.646  13.558 15.719 2.022  -0.928 -1.285 H17  S1Y 37 
S1Y H17A H17A H 0 0 N N N N N N 8.366  15.315 15.909 3.301  0.227  -1.699 H17A S1Y 38 
S1Y H18  H18  H 0 1 N N N N N N 10.939 14.131 16.961 3.513  -2.353 -0.127 H18  S1Y 39 
S1Y H18A H18A H 0 0 N N N N N N 10.754 14.371 15.179 4.424  -1.846 -1.561 H18A S1Y 40 
S1Y H19  H19  H 0 1 N N N N N N 11.865 16.247 16.180 4.772  -0.972 1.319  H19  S1Y 41 
S1Y H19A H19A H 0 0 N N N N N N 10.210 16.716 15.573 5.982  -1.631 0.201  H19A S1Y 42 
S1Y H21  H21  H 0 1 N N N N N N 12.155 18.215 17.460 7.229  1.576  -0.152 H21  S1Y 43 
S1Y H21A H21A H 0 0 N N N N N N 12.253 17.106 18.886 7.300  0.236  1.017  H21A S1Y 44 
S1Y H22  H22  H 0 1 N N N N N N 12.538 15.245 16.852 7.394  -1.390 -0.853 H22  S1Y 45 
S1Y H22A H22A H 0 0 N N N N N N 13.233 16.668 16.025 7.323  -0.050 -2.022 H22A S1Y 46 
S1Y HN23 HN23 H 0 0 N N N N N N 14.902 15.504 17.352 9.435  -0.388 0.006  HN23 S1Y 47 
S1Y HN2A HN2A H 0 0 N N N N N N 14.662 17.000 17.961 9.587  -0.752 -1.609 HN2A S1Y 48 
S1Y H24  H24  H 0 1 N N N N N N 10.888 15.005 18.711 4.740  0.928  1.793  H24  S1Y 49 
S1Y H24A H24A H 0 0 N N N N N N 10.417 16.400 19.722 5.389  2.261  0.822  H24A S1Y 50 
S1Y H25  H25  H 0 1 N N N N N N 8.167  16.285 18.258 3.529  2.063  -0.695 H25  S1Y 51 
S1Y H25A H25A H 0 0 N N N N N N 8.391  15.204 19.682 3.018  2.394  0.972  H25A S1Y 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S1Y O2  S1   DOUB N N 1  
S1Y S1  O4   DOUB N N 2  
S1Y S1  N5   SING N N 3  
S1Y S1  O3   SING N N 4  
S1Y O3  HO3  SING N N 5  
S1Y N5  C6   SING N N 6  
S1Y N5  HN5  SING N N 7  
S1Y C7  C6   SING N N 8  
S1Y C6  C10  SING N N 9  
S1Y C6  H6   SING N N 10 
S1Y C7  C8   SING N N 11 
S1Y C7  H7   SING N N 12 
S1Y C7  H7A  SING N N 13 
S1Y C8  N9   SING N N 14 
S1Y C8  H8   SING N N 15 
S1Y C8  H8A  SING N N 16 
S1Y N9  C13  SING N N 17 
S1Y N9  C10  SING N N 18 
S1Y C11 C10  SING N N 19 
S1Y C10 H10  SING N N 20 
S1Y O12 C11  DOUB N N 21 
S1Y C11 H11  SING N N 22 
S1Y N15 C13  SING N N 23 
S1Y C13 O14  DOUB N N 24 
S1Y N15 C16  SING N N 25 
S1Y N15 HN15 SING N N 26 
S1Y C17 C16  SING N N 27 
S1Y C16 C25  SING N N 28 
S1Y C16 H16  SING N N 29 
S1Y C18 C17  SING N N 30 
S1Y C17 H17  SING N N 31 
S1Y C17 H17A SING N N 32 
S1Y C18 C19  SING N N 33 
S1Y C18 H18  SING N N 34 
S1Y C18 H18A SING N N 35 
S1Y C19 N20  SING N N 36 
S1Y C19 H19  SING N N 37 
S1Y C19 H19A SING N N 38 
S1Y N20 C21  SING N N 39 
S1Y N20 C24  SING N N 40 
S1Y C22 C21  SING N N 41 
S1Y C21 H21  SING N N 42 
S1Y C21 H21A SING N N 43 
S1Y C22 N23  SING N N 44 
S1Y C22 H22  SING N N 45 
S1Y C22 H22A SING N N 46 
S1Y N23 HN23 SING N N 47 
S1Y N23 HN2A SING N N 48 
S1Y C25 C24  SING N N 49 
S1Y C24 H24  SING N N 50 
S1Y C24 H24A SING N N 51 
S1Y C25 H25  SING N N 52 
S1Y C25 H25A SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S1Y SMILES           ACDLabs              12.01 "O=S(=O)(O)NC2C(C=O)N(C(=O)NC1CCCN(CCN)CC1)CC2"                                                                                                              
S1Y SMILES_CANONICAL CACTVS               3.370 "NCCN1CCC[C@@H](CC1)NC(=O)N2CC[C@@H](N[S](O)(=O)=O)[C@H]2C=O"                                                                                                
S1Y SMILES           CACTVS               3.370 "NCCN1CCC[CH](CC1)NC(=O)N2CC[CH](N[S](O)(=O)=O)[CH]2C=O"                                                                                                     
S1Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1C[C@@H](CC[N@](C1)CCN)NC(=O)N2CC[C@H]([C@H]2C=O)NS(=O)(=O)O"                                                                                              
S1Y SMILES           "OpenEye OEToolkits" 1.7.2 "C1CC(CCN(C1)CCN)NC(=O)N2CCC(C2C=O)NS(=O)(=O)O"                                                                                                              
S1Y InChI            InChI                1.03  "InChI=1S/C14H27N5O5S/c15-5-9-18-6-1-2-11(3-7-18)16-14(21)19-8-4-12(13(19)10-20)17-25(22,23)24/h10-13,17H,1-9,15H2,(H,16,21)(H,22,23,24)/t11-,12+,13+/m0/s1" 
S1Y InChIKey         InChI                1.03  FVHVSTMGNMLCNC-YNEHKIRRSA-N                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S1Y "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,3R)-1-{[(4S)-1-(2-aminoethyl)azepan-4-yl]carbamoyl}-2-formylpyrrolidin-3-yl]sulfamic acid"         
S1Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2S,3R)-1-[[(1S,4S)-1-(2-azanylethyl)azepan-4-yl]carbamoyl]-2-methanoyl-pyrrolidin-3-yl]sulfamic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S1Y "Create component"  2011-05-17 RCSB 
S1Y "Modify descriptor" 2011-06-04 RCSB 
S1Y "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S1Y 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
