data_P8Y
#

_chem_comp.id                                   P8Y
_chem_comp.name                                 "(2S,3S,4S,5R)-2-{[(4-methylpentyl)sulfonyl]methyl}piperidine-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H25 N O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-06
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       295.396
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P8Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q1P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8Y  C1   C1   C  0  1  N  N  N  -47.464  38.070   -6.387   3.500  -0.013   0.175  C1   P8Y   1  
P8Y  C11  C2   C  0  1  N  N  N  -47.349  36.041   -8.396   7.188   1.060  -0.067  C11  P8Y   2  
P8Y  C16  C3   C  0  1  N  N  N  -44.169  40.050   -6.369  -0.568   0.467  -0.746  C16  P8Y   3  
P8Y  C18  C4   C  0  1  N  N  N  -46.249  37.842   -5.463   2.234   0.562  -0.461  C18  P8Y   4  
P8Y  C2   C5   C  0  1  N  N  N  -47.239  38.458   -7.852   4.719   0.773  -0.314  C2   P8Y   5  
P8Y  C3   C6   C  0  1  N  N  S  -43.397  41.213   -5.690  -1.896  -0.196  -0.373  C3   P8Y   6  
P8Y  C4   C7   C  0  1  N  N  S  -42.564  41.940   -6.728  -3.026   0.427  -1.196  C4   P8Y   7  
P8Y  C5   C8   C  0  1  N  N  S  -41.545  40.995   -7.348  -4.355  -0.225  -0.805  C5   P8Y   8  
P8Y  C6   C9   C  0  1  N  N  R  -40.630  40.517   -6.250  -4.583  -0.039   0.698  C6   P8Y   9  
P8Y  C7   C10  C  0  1  N  N  N  -41.462  39.799   -5.206  -3.408  -0.648   1.467  C7   P8Y  10  
P8Y  C8   C11  C  0  1  N  N  N  -46.521  37.310   -8.562   5.986   0.198   0.323  C8   P8Y  11  
P8Y  C9   C12  C  0  1  N  N  N  -46.560  37.591  -10.058   6.201  -1.233  -0.173  C9   P8Y  12  
P8Y  N2   N1   N  0  1  N  N  N  -42.476  40.715   -4.645  -2.160   0.010   1.057  N2   P8Y  13  
P8Y  O10  O1   O  0  1  N  N  N  -39.637  39.626   -6.793  -4.677   1.355   0.997  O10  P8Y  14  
P8Y  O12  O2   O  0  1  N  N  N  -43.471  42.440   -7.715  -3.088   1.831  -0.937  O12  P8Y  15  
P8Y  O13  O3   O  0  1  N  N  N  -46.204  40.418   -4.662   0.640  -0.152   1.515  O13  P8Y  16  
P8Y  O14  O4   O  0  1  N  N  N  -44.361  38.997   -3.851   0.884  -1.702  -0.369  O14  P8Y  17  
P8Y  O8   O5   O  0  1  N  N  N  -40.781  41.700   -8.334  -4.311  -1.620  -1.112  O8   P8Y  18  
P8Y  S17  S1   S  0  1  N  N  N  -45.227  39.316   -5.060   0.789  -0.370   0.118  S17  P8Y  19  
P8Y  H1   H1   H  0  1  N  N  N  -48.065  38.872   -5.933   3.429   0.065   1.260  H1   P8Y  20  
P8Y  H2   H2   H  0  1  N  N  N  -48.043  37.135   -6.390   3.606  -1.061  -0.108  H2   P8Y  21  
P8Y  H3   H3   H  0  1  N  N  N  -47.378  35.758   -7.334   7.035   2.079   0.286  H3   P8Y  22  
P8Y  H4   H4   H  0  1  N  N  N  -48.373  36.222   -8.755   8.091   0.650   0.387  H4   P8Y  23  
P8Y  H5   H5   H  0  1  N  N  N  -46.894  35.227   -8.980   7.296   1.063  -1.152  H5   P8Y  24  
P8Y  H6   H6   H  0  1  N  N  N  -44.790  40.432   -7.193  -0.415   0.392  -1.822  H6   P8Y  25  
P8Y  H7   H7   H  0  1  N  N  N  -43.465  39.299   -6.758  -0.592   1.517  -0.455  H7   P8Y  26  
P8Y  H8   H8   H  0  1  N  N  N  -46.624  37.428   -4.516   2.128   1.609  -0.179  H8   P8Y  27  
P8Y  H9   H9   H  0  1  N  N  N  -45.593  37.106   -5.951   2.305   0.484  -1.546  H9   P8Y  28  
P8Y  H10  H10  H  0  1  N  N  N  -46.622  39.367   -7.903   4.790   0.695  -1.399  H10  P8Y  29  
P8Y  H11  H11  H  0  1  N  N  N  -48.208  38.645   -8.338   4.613   1.820  -0.031  H11  P8Y  30  
P8Y  H12  H12  H  0  1  N  N  N  -44.122  41.912   -5.248  -1.840  -1.264  -0.582  H12  P8Y  31  
P8Y  H13  H13  H  0  1  N  N  N  -42.032  42.772   -6.243  -2.837   0.260  -2.257  H13  P8Y  32  
P8Y  H14  H14  H  0  1  N  N  N  -42.066  40.137   -7.798  -5.168   0.245  -1.358  H14  P8Y  33  
P8Y  H15  H15  H  0  1  N  N  N  -40.142  41.386   -5.784  -5.507  -0.538   0.990  H15  P8Y  34  
P8Y  H16  H16  H  0  1  N  N  N  -41.966  38.939   -5.671  -3.560  -0.504   2.536  H16  P8Y  35  
P8Y  H17  H17  H  0  1  N  N  N  -40.805  39.445   -4.398  -3.345  -1.714   1.249  H17  P8Y  36  
P8Y  H18  H18  H  0  1  N  N  N  -45.492  37.180   -8.194   5.878   0.194   1.408  H18  P8Y  37  
P8Y  H19  H19  H  0  1  N  N  N  -45.981  38.501  -10.276   7.104  -1.643   0.280  H19  P8Y  38  
P8Y  H20  H20  H  0  1  N  N  N  -46.124  36.740  -10.602   5.345  -1.847   0.105  H20  P8Y  39  
P8Y  H21  H21  H  0  1  N  N  N  -47.603  37.735  -10.377   6.310  -1.230  -1.258  H21  P8Y  40  
P8Y  H22  H22  H  0  1  N  N  N  -42.012  41.494   -4.223  -1.384  -0.308   1.618  H22  P8Y  41  
P8Y  H24  H24  H  0  1  N  N  N  -39.063  39.328   -6.097  -4.822   1.548   1.933  H24  P8Y  42  
P8Y  H25  H25  H  0  1  N  N  N  -44.096  43.026   -7.304  -3.783   2.291  -1.427  H25  P8Y  43  
P8Y  H26  H26  H  0  1  N  N  N  -40.144  41.112   -8.722  -5.122  -2.097  -0.889  H26  P8Y  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8Y  C9   C8   SING  N  N   1  
P8Y  C8   C11  SING  N  N   2  
P8Y  C8   C2   SING  N  N   3  
P8Y  O8   C5   SING  N  N   4  
P8Y  C2   C1   SING  N  N   5  
P8Y  O12  C4   SING  N  N   6  
P8Y  C5   C4   SING  N  N   7  
P8Y  C5   C6   SING  N  N   8  
P8Y  O10  C6   SING  N  N   9  
P8Y  C4   C3   SING  N  N  10  
P8Y  C1   C18  SING  N  N  11  
P8Y  C16  C3   SING  N  N  12  
P8Y  C16  S17  SING  N  N  13  
P8Y  C6   C7   SING  N  N  14  
P8Y  C3   N2   SING  N  N  15  
P8Y  C18  S17  SING  N  N  16  
P8Y  C7   N2   SING  N  N  17  
P8Y  S17  O13  DOUB  N  N  18  
P8Y  S17  O14  DOUB  N  N  19  
P8Y  C1   H1   SING  N  N  20  
P8Y  C1   H2   SING  N  N  21  
P8Y  C11  H3   SING  N  N  22  
P8Y  C11  H4   SING  N  N  23  
P8Y  C11  H5   SING  N  N  24  
P8Y  C16  H6   SING  N  N  25  
P8Y  C16  H7   SING  N  N  26  
P8Y  C18  H8   SING  N  N  27  
P8Y  C18  H9   SING  N  N  28  
P8Y  C2   H10  SING  N  N  29  
P8Y  C2   H11  SING  N  N  30  
P8Y  C3   H12  SING  N  N  31  
P8Y  C4   H13  SING  N  N  32  
P8Y  C5   H14  SING  N  N  33  
P8Y  C6   H15  SING  N  N  34  
P8Y  C7   H16  SING  N  N  35  
P8Y  C7   H17  SING  N  N  36  
P8Y  C8   H18  SING  N  N  37  
P8Y  C9   H19  SING  N  N  38  
P8Y  C9   H20  SING  N  N  39  
P8Y  C9   H21  SING  N  N  40  
P8Y  N2   H22  SING  N  N  41  
P8Y  O10  H24  SING  N  N  42  
P8Y  O12  H25  SING  N  N  43  
P8Y  O8   H26  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8Y  SMILES            ACDLabs               12.01  "C(CS(CC1NCC(C(C1O)O)O)(=O)=O)CC(C)C"  
P8Y  InChI             InChI                 1.03   "InChI=1S/C12H25NO5S/c1-8(2)4-3-5-19(17,18)7-9-11(15)12(16)10(14)6-13-9/h8-16H,3-7H2,1-2H3/t9-,10-,11+,12+/m1/s1"  
P8Y  InChIKey          InChI                 1.03   MIGRFAIIVQTLPR-WYUUTHIRSA-N  
P8Y  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CCC[S](=O)(=O)C[C@H]1NC[C@@H](O)[C@H](O)[C@H]1O"  
P8Y  SMILES            CACTVS                3.385  "CC(C)CCC[S](=O)(=O)C[CH]1NC[CH](O)[CH](O)[CH]1O"  
P8Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)CCCS(=O)(=O)C[C@@H]1[C@@H]([C@H]([C@@H](CN1)O)O)O"  
P8Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CCCS(=O)(=O)CC1C(C(C(CN1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P8Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3S,4S,5R)-2-{[(4-methylpentyl)sulfonyl]methyl}piperidine-3,4,5-triol"  
P8Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{S},4~{S},5~{R})-2-(4-methylpentylsulfonylmethyl)piperidine-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8Y  "Create component"  2019-08-06  RCSB  
P8Y  "Initial release"   2020-08-19  RCSB  
##
