data_P0Y
# 
_chem_comp.id                                    P0Y 
_chem_comp.name                                  "(2S,4R)-1-[(2R,3S)-3-amino-2-hydroxy-4-phenylbutyl]-4-[(pyridin-3-ylmethyl)sulfanyl]piperidine-2-carboxylic acid" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H29 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-03 
_chem_comp.pdbx_modified_date                    2012-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.549 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     P0Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1IDA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P0Y N   N   N 0 1 N N N 52.099 24.156 5.772  -4.439 1.096  -0.405 N   P0Y 1  
P0Y CA1 CA1 C 0 1 N N S 52.077 24.124 4.310  -4.003 -0.232 0.047  CA1 P0Y 2  
P0Y CC  CC  C 0 1 N N R 53.476 23.861 3.800  -2.508 -0.400 -0.228 CC  P0Y 3  
P0Y O1  O1  O 0 1 N N N 54.314 25.013 3.961  -2.084 -1.691 0.212  O1  P0Y 4  
P0Y CB1 CB1 C 0 1 N N N 51.416 25.416 3.784  -4.785 -1.309 -0.707 CB1 P0Y 5  
P0Y CG  CG  C 0 1 Y N N 50.083 25.676 4.439  -6.244 -1.222 -0.340 CG  P0Y 6  
P0Y CD1 CD1 C 0 1 Y N N 49.893 26.702 5.364  -7.095 -0.417 -1.075 CD1 P0Y 7  
P0Y CD2 CD2 C 0 1 Y N N 48.984 24.875 4.135  -6.733 -1.950 0.729  CD2 P0Y 8  
P0Y CE1 CE1 C 0 1 Y N N 48.647 26.911 5.971  -8.433 -0.336 -0.738 CE1 P0Y 9  
P0Y CE2 CE2 C 0 1 Y N N 47.728 25.078 4.725  -8.071 -1.869 1.066  CE2 P0Y 10 
P0Y CZ  CZ  C 0 1 Y N N 47.573 26.064 5.697  -8.920 -1.061 0.334  CZ  P0Y 11 
P0Y CM  CM  C 0 1 N N N 53.585 23.442 2.356  -1.726 0.678  0.526  CM  P0Y 12 
P0Y N11 N11 N 0 1 N N N 53.434 22.009 2.287  -0.312 0.624  0.131  N11 P0Y 13 
P0Y C21 C21 C 0 1 N N S 52.969 21.589 0.934  0.382  1.867  0.491  C21 P0Y 14 
P0Y C31 C31 C 0 1 N N N 52.812 20.088 0.910  1.809  1.835  -0.063 C31 P0Y 15 
P0Y C41 C41 C 0 1 N N R 53.830 19.219 1.650  2.549  0.627  0.518  C41 P0Y 16 
P0Y C51 C51 C 0 1 N N N 54.089 19.760 3.015  1.779  -0.650 0.170  C51 P0Y 17 
P0Y C61 C61 C 0 1 N N N 54.556 21.193 2.813  0.354  -0.546 0.717  C61 P0Y 18 
P0Y C   C   C 0 1 N N N 51.699 22.285 0.486  -0.357 3.043  -0.094 C   P0Y 19 
P0Y O   O   O 0 1 N N N 50.762 22.369 1.324  -0.993 2.911  -1.112 O   P0Y 20 
P0Y N12 N12 N 0 1 Y N N 54.803 15.285 -1.579 8.676  -0.537 0.426  N12 P0Y 21 
P0Y C22 C22 C 0 1 Y N N 54.166 16.348 -1.032 7.437  -0.366 0.842  C22 P0Y 22 
P0Y C32 C32 C 0 1 Y N N 52.785 16.289 -0.747 6.389  -1.035 0.237  C32 P0Y 23 
P0Y C42 C42 C 0 1 Y N N 52.064 15.129 -0.997 6.656  -1.894 -0.819 C42 P0Y 24 
P0Y C52 C52 C 0 1 Y N N 52.749 14.046 -1.565 7.972  -2.048 -1.227 C52 P0Y 25 
P0Y C62 C62 C 0 1 Y N N 54.121 14.172 -1.859 8.967  -1.346 -0.574 C62 P0Y 26 
P0Y CE  CE  C 0 1 N N N 52.196 17.437 -0.023 4.976  -0.834 0.718  CE  P0Y 27 
P0Y S   S   S 0 1 N N N 53.165 17.535 1.534  4.217  0.541  -0.190 S   P0Y 28 
P0Y H   H1  H 0 1 N N N 51.176 24.330 6.116  -4.277 1.212  -1.394 H1  P0Y 29 
P0Y HA1 HA1 H 0 1 N N N 51.461 23.299 3.923  -4.189 -0.330 1.117  HA1 P0Y 30 
P0Y HC  HC  H 0 1 N N N 53.802 23.011 4.418  -2.322 -0.301 -1.298 HC  P0Y 31 
P0Y HOR HOR H 0 1 N N N 55.185 24.820 3.633  -2.220 -1.849 1.156  HOR P0Y 32 
P0Y HB2 HB2 H 0 1 N N N 52.084 26.264 3.997  -4.671 -1.157 -1.780 HB2 P0Y 33 
P0Y HB3 HB3 H 0 1 N N N 51.261 25.315 2.700  -4.401 -2.293 -0.437 HB3 P0Y 34 
P0Y HD1 HD1 H 0 1 N N N 50.721 27.347 5.617  -6.714 0.149  -1.912 HD1 P0Y 35 
P0Y HD2 HD2 H 0 1 N N N 49.103 24.072 3.422  -6.069 -2.582 1.300  HD2 P0Y 36 
P0Y HE1 HE1 H 0 1 N N N 48.517 27.735 6.657  -9.097 0.293  -1.311 HE1 P0Y 37 
P0Y HE2 HE2 H 0 1 N N N 46.885 24.473 4.427  -8.453 -2.438 1.900  HE2 P0Y 38 
P0Y HZ  HZ  H 0 1 N N N 46.639 26.171 6.228  -9.966 -0.998 0.598  HZ  P0Y 39 
P0Y HM1 HM1 H 0 1 N N N 52.796 23.930 1.765  -2.134 1.659  0.284  HM1 P0Y 40 
P0Y HM2 HM2 H 0 1 N N N 54.567 23.734 1.955  -1.810 0.504  1.599  HM2 P0Y 41 
P0Y H1  H2  H 0 1 N N N 53.736 21.898 0.208  0.416  1.962  1.576  H1  P0Y 42 
P0Y H31 H31 H 0 1 N N N 51.833 19.872 1.363  1.775  1.753  -1.149 H31 P0Y 43 
P0Y H32 H32 H 0 1 N N N 52.860 19.789 -0.147 2.329  2.750  0.218  H32 P0Y 44 
P0Y H41 H41 H 0 1 N N N 54.841 19.216 1.217  2.617  0.728  1.601  H41 P0Y 45 
P0Y H51 H51 H 0 1 N N N 53.174 19.732 3.624  1.746  -0.771 -0.913 H51 P0Y 46 
P0Y H52 H52 H 0 1 N N N 54.862 19.168 3.527  2.279  -1.509 0.617  H52 P0Y 47 
P0Y H61 H61 H 0 1 N N N 55.389 21.209 2.095  0.388  -0.439 1.801  H61 P0Y 48 
P0Y H62 H62 H 0 1 N N N 54.892 21.608 3.775  -0.201 -1.447 0.458  H62 P0Y 49 
P0Y H21 H21 H 0 1 N N N 54.720 17.249 -0.812 7.237  0.305  1.664  H21 P0Y 50 
P0Y H42 H42 H 0 1 N N N 51.012 15.063 -0.762 5.858  -2.430 -1.310 H42 P0Y 51 
P0Y H53 H53 H 0 1 N N N 52.229 13.123 -1.775 8.216  -2.709 -2.046 H53 P0Y 52 
P0Y H63 H63 H 0 1 N N N 54.636 13.344 -2.324 9.994  -1.460 -0.887 H63 P0Y 53 
P0Y H11 H11 H 0 1 N N N 52.285 18.365 -0.607 4.400  -1.744 0.546  H11 P0Y 54 
P0Y H2A H2A H 0 1 N N N 51.128 17.273 0.182  4.984  -0.605 1.784  H2A P0Y 55 
P0Y H2  H3  H 0 1 N Y N 52.424 23.277 6.120  -5.408 1.256  -0.176 H2  P0Y 56 
P0Y OXT OXT O 0 1 N Y N 51.373 22.883 -0.771 -0.308 4.237  0.517  OXT P0Y 57 
P0Y HXT HXT H 0 1 N Y N 50.492 23.238 -0.735 -0.799 4.962  0.105  HXT P0Y 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P0Y N   CA1 SING N N 1  
P0Y N   H   SING N N 2  
P0Y CA1 CC  SING N N 3  
P0Y CA1 CB1 SING N N 4  
P0Y CA1 HA1 SING N N 5  
P0Y CC  O1  SING N N 6  
P0Y CC  CM  SING N N 7  
P0Y CC  HC  SING N N 8  
P0Y O1  HOR SING N N 9  
P0Y CB1 CG  SING N N 10 
P0Y CB1 HB2 SING N N 11 
P0Y CB1 HB3 SING N N 12 
P0Y CG  CD1 DOUB Y N 13 
P0Y CG  CD2 SING Y N 14 
P0Y CD1 CE1 SING Y N 15 
P0Y CD1 HD1 SING N N 16 
P0Y CD2 CE2 DOUB Y N 17 
P0Y CD2 HD2 SING N N 18 
P0Y CE1 CZ  DOUB Y N 19 
P0Y CE1 HE1 SING N N 20 
P0Y CE2 CZ  SING Y N 21 
P0Y CE2 HE2 SING N N 22 
P0Y CZ  HZ  SING N N 23 
P0Y CM  HM1 SING N N 24 
P0Y CM  HM2 SING N N 25 
P0Y CM  N11 SING N N 26 
P0Y N11 C21 SING N N 27 
P0Y N11 C61 SING N N 28 
P0Y C21 C31 SING N N 29 
P0Y C21 C   SING N N 30 
P0Y C21 H1  SING N N 31 
P0Y C31 C41 SING N N 32 
P0Y C31 H31 SING N N 33 
P0Y C31 H32 SING N N 34 
P0Y C41 C51 SING N N 35 
P0Y C41 H41 SING N N 36 
P0Y C41 S   SING N N 37 
P0Y C51 C61 SING N N 38 
P0Y C51 H51 SING N N 39 
P0Y C51 H52 SING N N 40 
P0Y C61 H61 SING N N 41 
P0Y C61 H62 SING N N 42 
P0Y C   O   DOUB N N 43 
P0Y N12 C22 DOUB Y N 44 
P0Y N12 C62 SING Y N 45 
P0Y C22 C32 SING Y N 46 
P0Y C22 H21 SING N N 47 
P0Y C32 C42 DOUB Y N 48 
P0Y C32 CE  SING N N 49 
P0Y C42 C52 SING Y N 50 
P0Y C42 H42 SING N N 51 
P0Y C52 C62 DOUB Y N 52 
P0Y C52 H53 SING N N 53 
P0Y C62 H63 SING N N 54 
P0Y CE  S   SING N N 55 
P0Y CE  H11 SING N N 56 
P0Y CE  H2A SING N N 57 
P0Y N   H2  SING N N 58 
P0Y C   OXT SING N N 59 
P0Y OXT HXT SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P0Y SMILES           ACDLabs              12.01 "O=C(O)C3N(CC(O)C(N)Cc1ccccc1)CCC(SCc2cccnc2)C3"                                                                                                                                       
P0Y SMILES_CANONICAL CACTVS               3.370 "N[C@@H](Cc1ccccc1)[C@H](O)CN2CC[C@H](C[C@H]2C(O)=O)SCc3cccnc3"                                                                                                                        
P0Y SMILES           CACTVS               3.370 "N[CH](Cc1ccccc1)[CH](O)CN2CC[CH](C[CH]2C(O)=O)SCc3cccnc3"                                                                                                                             
P0Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C[C@@H]([C@@H](C[N@@]2CC[C@H](C[C@H]2C(=O)O)SCc3cccnc3)O)N"                                                                                                                 
P0Y SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CC(C(CN2CCC(CC2C(=O)O)SCc3cccnc3)O)N"                                                                                                                                       
P0Y InChI            InChI                1.03  "InChI=1S/C22H29N3O3S/c23-19(11-16-5-2-1-3-6-16)21(26)14-25-10-8-18(12-20(25)22(27)28)29-15-17-7-4-9-24-13-17/h1-7,9,13,18-21,26H,8,10-12,14-15,23H2,(H,27,28)/t18-,19+,20+,21-/m1/s1" 
P0Y InChIKey         InChI                1.03  ZHXWLXZCNVHJFZ-IVAOSVALSA-N                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
P0Y "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,4R)-1-[(2R,3S)-3-amino-2-hydroxy-4-phenylbutyl]-4-[(pyridin-3-ylmethyl)sulfanyl]piperidine-2-carboxylic acid"    
P0Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(1S,2S,4R)-1-[(2R,3S)-3-azanyl-2-hydroxy-4-phenyl-butyl]-4-(pyridin-3-ylmethylsulfanyl)piperidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P0Y "Create component"     2010-11-03 RCSB 
P0Y "Modify aromatic_flag" 2011-06-04 RCSB 
P0Y "Modify descriptor"    2011-06-04 RCSB 
# 
