data_NMY
#

_chem_comp.id                                   NMY
_chem_comp.name                                 NEOMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C23 H46 N6 O13"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-07-25
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       614.644
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NMY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2FCY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NMY  C1    C1    C  0  1  N  N  R  104.276   0.115  -32.524  -3.390  -1.005   1.254  C1    NMY   1  
NMY  O1    O1    O  0  1  N  N  N  104.629   1.518  -32.489  -3.227  -0.159   0.113  O1    NMY   2  
NMY  C2    C2    C  0  1  N  N  R  103.917  -0.403  -31.104  -2.598  -2.298   1.048  C2    NMY   3  
NMY  N2    N2    N  0  1  N  N  N  102.858   0.442  -30.486  -1.183  -1.975   0.816  N2    NMY   4  
NMY  C3    C3    C  0  1  N  N  R  105.215  -0.461  -30.188  -3.158  -3.043  -0.167  C3    NMY   5  
NMY  O3    O3    O  0  1  N  N  N  104.894  -0.961  -28.869  -2.473  -4.287  -0.323  O3    NMY   6  
NMY  C4    C4    C  0  1  N  N  S  106.290  -1.377  -30.859  -4.651  -3.305   0.053  C4    NMY   7  
NMY  O4    O4    O  0  1  N  N  N  107.453  -1.449  -30.037  -5.201  -3.936  -1.105  O4    NMY   8  
NMY  C5    C5    C  0  1  N  N  R  106.646  -0.818  -32.284  -5.365  -1.973   0.297  C5    NMY   9  
NMY  O5    O5    O  0  1  N  N  N  105.379  -0.747  -33.081  -4.774  -1.317   1.421  O5    NMY  10  
NMY  C6    C6    C  0  1  N  N  N  107.696  -1.735  -32.995  -6.846  -2.231   0.577  C6    NMY  11  
NMY  C7    C7    C  0  1  N  N  R  105.142   4.812  -35.306  -3.486   4.021  -0.496  C7    NMY  12  
NMY  N7    N7    N  0  1  N  N  N  105.472   5.559  -36.552  -3.615   5.454  -0.201  N7    NMY  13  
NMY  C12   C12   C  0  1  N  N  S  103.964   3.779  -35.506  -2.244   3.466   0.205  C12   NMY  14  
NMY  C11   C11   C  0  1  N  N  R  103.654   3.009  -34.206  -2.110   1.973  -0.103  C11   NMY  15  
NMY  O11   O11   O  0  1  N  N  N  102.578   2.070  -34.457  -0.950   1.454   0.551  O11   NMY  16  
NMY  C10   C10   C  0  1  N  N  R  104.916   2.234  -33.743  -3.352   1.235   0.400  C10   NMY  17  
NMY  C9    C9    C  0  1  N  N  S  106.111   3.231  -33.545  -4.594   1.790  -0.300  C9    NMY  18  
NMY  N9    N9    N  0  1  N  N  N  107.328   2.508  -33.132  -5.787   1.082   0.183  N9    NMY  19  
NMY  C8    C8    C  0  1  N  N  N  106.422   4.029  -34.859  -4.728   3.283   0.007  C8    NMY  20  
NMY  C13   C13   C  0  1  N  N  S  101.316   2.275  -33.781   0.241   1.525  -0.235  C13   NMY  21  
NMY  C14   C14   C  0  1  N  N  R  100.144   1.838  -34.629   1.460   1.061   0.592  C14   NMY  22  
NMY  C15   C15   C  0  1  N  N  S   99.120   1.259  -33.570   2.334   0.293  -0.424  C15   NMY  23  
NMY  C16   C16   C  0  1  N  N  R   99.951   0.868  -32.356   1.539   0.384  -1.746  C16   NMY  24  
NMY  O16   O16   O  0  1  N  N  N  101.272   1.498  -32.547   0.170   0.597  -1.339  O16   NMY  25  
NMY  C17   C17   C  0  1  N  N  N  100.127  -0.630  -32.196   1.664  -0.922  -2.533  C17   NMY  26  
NMY  C21   C21   C  0  1  N  N  S   94.411   2.307  -32.243   7.235  -0.711   0.730  C21   NMY  27  
NMY  C20   C20   C  0  1  N  N  R   95.337   3.560  -32.475   6.933   0.723   1.175  C20   NMY  28  
NMY  C19   C19   C  0  1  N  N  R   96.054   3.478  -33.839   5.846   1.309   0.268  C19   NMY  29  
NMY  C18   C18   C  0  1  N  N  R   96.899   2.185  -33.920   4.608   0.411   0.324  C18   NMY  30  
NMY  O18   O18   O  0  1  N  N  N   98.070   2.205  -33.124   3.610   0.921  -0.563  O18   NMY  31  
NMY  C22   C22   C  0  1  N  N  S   95.219   0.976  -32.310   5.943  -1.531   0.767  C22   NMY  32  
NMY  O22   O22   O  0  1  N  N  N   96.003   0.984  -33.593   4.964  -0.915  -0.072  O22   NMY  33  
NMY  C23   C23   C  0  1  N  N  N   96.157   0.778  -31.048   6.224  -2.950   0.267  C23   NMY  34  
NMY  N6    N6    N  0  1  N  N  N  108.053  -1.233  -34.326  -7.531  -0.952   0.811  N6    NMY  35  
NMY  O14   O14   O  0  1  N  N  N   99.695   2.910  -35.467   2.170   2.187   1.113  O14   NMY  36  
NMY  O20   O20   O  0  1  N  N  N   94.572   4.728  -32.420   6.475   0.717   2.528  O20   NMY  37  
NMY  O21   O21   O  0  1  N  N  N   93.682   2.321  -30.989   7.754  -0.699  -0.601  O21   NMY  38  
NMY  O17   O17   O  0  1  N  N  N   99.917  -0.906  -30.822   1.021  -0.778  -3.801  O17   NMY  39  
NMY  O12   O12   O  0  1  N  N  N  102.782   4.457  -35.892  -1.084   4.155  -0.266  O12   NMY  40  
NMY  N19   N19   N  0  1  N  N  N   96.920  -0.508  -31.135   4.984  -3.736   0.303  N19   NMY  41  
NMY  N23   N23   N  0  1  N  N  N   96.915   4.690  -34.105   6.343   1.377  -1.113  N23   NMY  42  
NMY  H1    H1    H  0  1  N  N  N  103.404   0.040  -33.190  -3.023  -0.491   2.142  H1    NMY  43  
NMY  H2    H2    H  0  1  N  N  N  103.519  -1.425  -31.195  -2.688  -2.925   1.935  H2    NMY  44  
NMY  HN21  1HN2  H  0  0  N  N  N  103.096   0.631  -29.533  -0.792  -1.479   1.603  HN21  NMY  45  
NMY  HN22  2HN2  H  0  0  N  N  N  102.784   1.303  -30.988  -0.651  -2.809   0.614  HN22  NMY  46  
NMY  H3    H3    H  0  1  N  N  N  105.615   0.558  -30.081  -3.022  -2.436  -1.062  H3    NMY  47  
NMY  HO3   HO3   H  0  1  N  N  N  104.824  -1.908  -28.897  -2.777  -4.813  -1.075  HO3   NMY  48  
NMY  H4    H4    H  0  1  N  N  N  105.885  -2.394  -30.972  -4.784  -3.954   0.919  H4    NMY  49  
NMY  HO4   HO4   H  0  1  N  N  N  108.229  -1.465  -30.585  -4.792  -4.785  -1.323  HO4   NMY  50  
NMY  H5    H5    H  0  1  N  N  N  107.095   0.182  -32.195  -5.266  -1.341  -0.586  H5    NMY  51  
NMY  H61   1H6   H  0  1  N  N  N  108.606  -1.772  -32.378  -7.296  -2.733  -0.280  H61   NMY  52  
NMY  H62   2H6   H  0  1  N  N  N  107.250  -2.733  -33.116  -6.945  -2.863   1.460  H62   NMY  53  
NMY  H7    H7    H  0  1  N  N  N  104.815   5.541  -34.550  -3.390   3.879  -1.572  H7    NMY  54  
NMY  H71   1H7   H  0  1  N  N  N  105.546   6.535  -36.346  -4.428   5.845  -0.652  H71   NMY  55  
NMY  H72   2H7   H  0  1  N  N  N  106.342   5.229  -36.918  -3.641   5.618   0.795  H72   NMY  56  
NMY  H12   H12   H  0  1  N  N  N  104.287   3.072  -36.284  -2.340   3.608   1.281  H12   NMY  57  
NMY  H11   H11   H  0  1  N  N  N  103.356   3.719  -33.420  -2.014   1.831  -1.179  H11   NMY  58  
NMY  H10   H10   H  0  1  N  N  N  105.195   1.499  -34.513  -3.448   1.377   1.477  H10   NMY  59  
NMY  H9    H9    H  0  1  N  N  N  105.810   3.940  -32.759  -4.498   1.648  -1.377  H9    NMY  60  
NMY  H91   1H9   H  0  1  N  N  N  107.906   2.344  -33.931  -6.603   1.344  -0.349  H91   NMY  61  
NMY  H92   2H9   H  0  1  N  N  N  107.831   3.056  -32.464  -5.647   0.083   0.162  H92   NMY  62  
NMY  H81   1H8   H  0  1  N  N  N  106.720   3.328  -35.653  -4.824   3.425   1.084  H81   NMY  63  
NMY  H82   2H8   H  0  1  N  N  N  107.241   4.739  -34.673  -5.613   3.679  -0.492  H82   NMY  64  
NMY  H13   H13   H  0  1  N  N  N  101.241   3.353  -33.577   0.394   2.540  -0.600  H13   NMY  65  
NMY  H14   H14   H  0  1  N  N  N  100.358   1.060  -35.377   1.144   0.403   1.402  H14   NMY  66  
NMY  H15   H15   H  0  1  N  N  N   98.581   0.428  -34.048   2.452  -0.746  -0.118  H15   NMY  67  
NMY  H16   H16   H  0  1  N  N  N   99.435   1.205  -31.445   1.893   1.224  -2.344  H16   NMY  68  
NMY  H171  1H17  H  0  0  N  N  N   99.399  -1.174  -32.816   2.718  -1.156  -2.685  H171  NMY  69  
NMY  H172  2H17  H  0  0  N  N  N  101.127  -0.952  -32.521   1.189  -1.730  -1.975  H172  NMY  70  
NMY  H21   H21   H  0  1  N  N  N   93.678   2.366  -33.061   7.968  -1.155   1.404  H21   NMY  71  
NMY  H20   H20   H  0  1  N  N  N   96.100   3.574  -31.682   7.838   1.327   1.097  H20   NMY  72  
NMY  H19   H19   H  0  1  N  N  N   95.279   3.455  -34.619   5.587   2.311   0.611  H19   NMY  73  
NMY  H18   H18   H  0  1  N  N  N   97.277   2.102  -34.950   4.216   0.394   1.341  H18   NMY  74  
NMY  H22   H22   H  0  1  N  N  N   94.527   0.121  -32.294   5.569  -1.574   1.790  H22   NMY  75  
NMY  H231  1H23  H  0  0  N  N  N   96.871   1.613  -31.001   6.597  -2.907  -0.756  H231  NMY  76  
NMY  H232  2H23  H  0  0  N  N  N   95.527   0.750  -30.147   6.971  -3.419   0.907  H232  NMY  77  
NMY  HN61  1HN6  H  0  0  N  N  N  108.134  -0.237  -34.296  -7.545  -0.392  -0.028  HN61  NMY  78  
NMY  HN62  2HN6  H  0  0  N  N  N  108.926  -1.630  -34.609  -8.465  -1.101   1.163  HN62  NMY  79  
NMY  HO41  1HO4  H  0  0  N  N  N   99.596   3.699  -34.947   1.647   2.739   1.711  HO41  NMY  80  
NMY  HO22  2HO2  H  0  0  N  N  N   94.398   4.951  -31.513   7.112   0.352   3.158  HO22  NMY  81  
NMY  HO21  1HO2  H  0  0  N  N  N   94.297   2.324  -30.265   8.572  -0.192  -0.700  HO21  NMY  82  
NMY  H17   H17   H  0  1  N  N  N   99.870  -1.846  -30.691   1.061  -1.569  -4.355  H17   NMY  83  
NMY  HO12  2HO1  H  0  0  N  N  N  102.239   4.609  -35.127  -1.101   5.108  -0.104  HO12  NMY  84  
NMY  H191  1H19  H  0  0  N  N  N   97.090  -0.731  -32.095   5.143  -4.678  -0.023  H191  NMY  85  
NMY  H192  2H19  H  0  0  N  N  N   97.792  -0.411  -30.656   4.583  -3.737   1.229  H192  NMY  86  
NMY  HN31  1HN3  H  0  0  N  N  N   97.105   5.160  -33.243   5.643   1.760  -1.730  HN31  NMY  87  
NMY  HN32  2HN3  H  0  0  N  N  N   97.776   4.402  -34.524   7.200   1.907  -1.163  HN32  NMY  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NMY  C1   O5    SING  N  N   1  
NMY  C1   O1    SING  N  N   2  
NMY  C1   C2    SING  N  N   3  
NMY  C1   H1    SING  N  N   4  
NMY  O1   C10   SING  N  N   5  
NMY  C2   N2    SING  N  N   6  
NMY  C2   C3    SING  N  N   7  
NMY  C2   H2    SING  N  N   8  
NMY  N2   HN21  SING  N  N   9  
NMY  N2   HN22  SING  N  N  10  
NMY  C3   C4    SING  N  N  11  
NMY  C3   O3    SING  N  N  12  
NMY  C3   H3    SING  N  N  13  
NMY  O3   HO3   SING  N  N  14  
NMY  C4   C5    SING  N  N  15  
NMY  C4   O4    SING  N  N  16  
NMY  C4   H4    SING  N  N  17  
NMY  O4   HO4   SING  N  N  18  
NMY  C5   O5    SING  N  N  19  
NMY  C5   C6    SING  N  N  20  
NMY  C5   H5    SING  N  N  21  
NMY  C6   N6    SING  N  N  22  
NMY  C6   H61   SING  N  N  23  
NMY  C6   H62   SING  N  N  24  
NMY  C7   N7    SING  N  N  25  
NMY  C7   C12   SING  N  N  26  
NMY  C7   C8    SING  N  N  27  
NMY  C7   H7    SING  N  N  28  
NMY  N7   H71   SING  N  N  29  
NMY  N7   H72   SING  N  N  30  
NMY  C12  O12   SING  N  N  31  
NMY  C12  C11   SING  N  N  32  
NMY  C12  H12   SING  N  N  33  
NMY  C11  O11   SING  N  N  34  
NMY  C11  C10   SING  N  N  35  
NMY  C11  H11   SING  N  N  36  
NMY  O11  C13   SING  N  N  37  
NMY  C10  C9    SING  N  N  38  
NMY  C10  H10   SING  N  N  39  
NMY  C9   C8    SING  N  N  40  
NMY  C9   N9    SING  N  N  41  
NMY  C9   H9    SING  N  N  42  
NMY  N9   H91   SING  N  N  43  
NMY  N9   H92   SING  N  N  44  
NMY  C8   H81   SING  N  N  45  
NMY  C8   H82   SING  N  N  46  
NMY  C13  C14   SING  N  N  47  
NMY  C13  O16   SING  N  N  48  
NMY  C13  H13   SING  N  N  49  
NMY  C14  O14   SING  N  N  50  
NMY  C14  C15   SING  N  N  51  
NMY  C14  H14   SING  N  N  52  
NMY  C15  O18   SING  N  N  53  
NMY  C15  C16   SING  N  N  54  
NMY  C15  H15   SING  N  N  55  
NMY  C16  O16   SING  N  N  56  
NMY  C16  C17   SING  N  N  57  
NMY  C16  H16   SING  N  N  58  
NMY  C17  O17   SING  N  N  59  
NMY  C17  H171  SING  N  N  60  
NMY  C17  H172  SING  N  N  61  
NMY  C21  C20   SING  N  N  62  
NMY  C21  C22   SING  N  N  63  
NMY  C21  O21   SING  N  N  64  
NMY  C21  H21   SING  N  N  65  
NMY  C20  C19   SING  N  N  66  
NMY  C20  O20   SING  N  N  67  
NMY  C20  H20   SING  N  N  68  
NMY  C19  N23   SING  N  N  69  
NMY  C19  C18   SING  N  N  70  
NMY  C19  H19   SING  N  N  71  
NMY  C18  O22   SING  N  N  72  
NMY  C18  O18   SING  N  N  73  
NMY  C18  H18   SING  N  N  74  
NMY  C22  O22   SING  N  N  75  
NMY  C22  C23   SING  N  N  76  
NMY  C22  H22   SING  N  N  77  
NMY  C23  N19   SING  N  N  78  
NMY  C23  H231  SING  N  N  79  
NMY  C23  H232  SING  N  N  80  
NMY  N6   HN61  SING  N  N  81  
NMY  N6   HN62  SING  N  N  82  
NMY  O14  HO41  SING  N  N  83  
NMY  O20  HO22  SING  N  N  84  
NMY  O21  HO21  SING  N  N  85  
NMY  O17  H17   SING  N  N  86  
NMY  O12  HO12  SING  N  N  87  
NMY  N19  H191  SING  N  N  88  
NMY  N19  H192  SING  N  N  89  
NMY  N23  HN31  SING  N  N  90  
NMY  N23  HN32  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NMY  SMILES            ACDLabs               10.04  "O(C2C(OC1OC(CN)C(O)C(O)C1N)C(N)CC(N)C2O)C4OC(C(OC3OC(CN)C(O)C(O)C3N)C4O)CO"  
NMY  SMILES_CANONICAL  CACTVS                3.341  "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O)[C@H]2O[C@@H]3O[C@H](CO)[C@@H](O[C@H]4O[C@@H](CN)[C@@H](O)[C@H](O)[C@H]4N)[C@H]3O)[C@H](N)[C@@H](O)[C@@H]1O"  
NMY  SMILES            CACTVS                3.341  "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N)[CH]3O)[CH](N)[CH](O)[CH]1O"  
NMY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O[C@@H]4[C@@H]([C@H]([C@@H]([C@@H](O4)CN)O)O)N)O)O)N"  
NMY  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CN)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N"  
NMY  InChI             InChI                 1.03   "InChI=1S/C23H46N6O13/c24-2-7-13(32)15(34)10(28)21(37-7)40-18-6(27)1-5(26)12(31)20(18)42-23-17(36)19(9(4-30)39-23)41-22-11(29)16(35)14(33)8(3-25)38-22/h5-23,30-36H,1-4,24-29H2/t5-,6+,7-,8+,9-,10-,11-,12+,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23+/m1/s1"  
NMY  InChIKey          InChI                 1.03   PGBHMTALBVVCIT-VCIWKGPPSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NMY  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside"  
NMY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-[(1R,2R,3S,4R,6S)-4,6-diamino-2-[(2S,3R,4S,5R)-4-[(2R,3R,4R,5S,6S)-3-amino-6-(aminomethyl)-4,5-dihydroxy-oxan-2-yl]oxy-3-hydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-3-hydroxy-cyclohexyl]oxy-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NMY  "Create component"   2007-07-25  RCSB  
NMY  "Modify descriptor"  2011-06-04  RCSB  
NMY  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  NMY  MYCIFRADIN  ?  ?  
2  NMY  NEOMAS      ?  ?  
3  NMY  PIMAVECORT  ?  ?  
4  NMY  VONAMYCIN   ?  ?  
##
