data_N7Y
#

_chem_comp.id                                   N7Y
_chem_comp.name                                 "adenosine 3',5'-bis(trihydrogen diphosphate)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H17 N5 O16 P4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-06
_chem_comp.pdbx_modified_date                   2019-11-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       587.161
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N7Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OTT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N7Y  O3   O1   O  0  1  N  N  N  57.869  32.330  -28.760   0.018  -4.634   0.491  O3   N7Y   1  
N7Y  C4   C1   C  0  1  Y  N  N  55.797  25.640  -31.417  -3.191   2.756  -1.040  C4   N7Y   2  
N7Y  C5   C2   C  0  1  N  N  R  57.126  27.788  -31.634  -2.307   0.917   0.445  C5   N7Y   3  
N7Y  O4   O2   O  0  1  N  N  N  55.197  31.641  -28.885   2.198  -5.738  -0.140  O4   N7Y   4  
N7Y  C6   C3   C  0  1  N  N  R  56.431  28.534  -30.485  -2.443  -0.435  -0.291  C6   N7Y   5  
N7Y  N1   N1   N  0  1  Y  N  N  55.263  25.385  -35.795  -7.144   2.720   1.018  N1   N7Y   6  
N7Y  C7   C4   C  0  1  N  N  S  57.614  28.834  -29.567  -0.983  -0.899  -0.495  C7   N7Y   7  
N7Y  C8   C5   C  0  1  N  N  R  58.484  27.599  -29.737  -0.139   0.227   0.142  C8   N7Y   8  
N7Y  N2   N2   N  0  1  Y  N  N  56.426  27.079  -34.540  -5.289   1.412   1.452  N2   N7Y   9  
N7Y  C9   C6   C  0  1  N  N  N  58.043  26.397  -28.940   1.134   0.465  -0.674  C9   N7Y  10  
N7Y  O5   O3   O  0  1  N  N  N  55.905  33.854  -27.906   1.073  -6.530   1.976  O5   N7Y  11  
N7Y  O6   O4   O  0  1  N  N  N  56.317  31.722  -26.628   0.093  -7.108  -0.395  O6   N7Y  12  
N7Y  N3   N3   N  0  1  Y  N  N  55.171  24.746  -32.144  -4.295   3.428  -1.190  N3   N7Y  13  
N7Y  O7   O5   O  0  1  N  N  N  59.445  30.704  -27.625  -1.399  -3.953  -1.616  O7   N7Y  14  
N7Y  O8   O6   O  0  1  N  N  N  58.493  26.529  -27.574   1.955   1.425  -0.007  O8   N7Y  15  
N7Y  N4   N4   N  0  1  Y  N  N  56.364  26.651  -32.149  -3.328   1.857  -0.024  N4   N7Y  16  
N7Y  N    N5   N  0  1  N  N  N  54.196  23.585  -34.834  -7.184   4.352  -0.685  N    N7Y  17  
N7Y  C    C7   C  0  1  Y  N  N  54.918  24.694  -34.687  -6.532   3.361   0.027  C    N7Y  18  
N7Y  O    O7   O  0  1  N  N  N  55.841  29.741  -30.957  -3.159  -1.373   0.514  O    N7Y  19  
N7Y  C1   C8   C  0  1  Y  N  N  55.976  26.505  -35.658  -6.529   1.774   1.704  C1   N7Y  20  
N7Y  C2   C9   C  0  1  Y  N  N  56.075  26.374  -33.459  -4.597   1.996   0.480  C2   N7Y  21  
N7Y  C3   C10  C  0  1  Y  N  N  55.339  25.197  -33.445  -5.207   3.009  -0.279  C3   N7Y  22  
N7Y  O1   O8   O  0  1  N  N  N  58.323  30.041  -29.921  -0.754  -2.140   0.176  O1   N7Y  23  
N7Y  O10  O9   O  0  1  N  N  N  60.962  26.975  -25.338   6.549   2.387   0.365  O10  N7Y  24  
N7Y  O11  O10  O  0  1  N  N  N  59.995  26.982  -23.010   5.779   3.962   2.181  O11  N7Y  25  
N7Y  O12  O11  O  0  1  N  N  N  59.742  29.011  -24.487   5.809   4.694  -0.344  O12  N7Y  26  
N7Y  O13  O12  O  0  1  N  N  N  57.052  28.251  -26.461   4.243   0.742  -0.824  O13  N7Y  27  
N7Y  O14  O13  O  0  1  N  N  N  56.408  25.788  -26.391   3.148   2.707  -1.968  O14  N7Y  28  
N7Y  O15  O14  O  0  1  N  N  N  58.368  27.308  -31.145  -0.988   1.394   0.101  O15  N7Y  29  
N7Y  O2   O15  O  0  1  N  N  N  60.112  31.883  -29.786   0.986  -3.178  -1.329  O2   N7Y  30  
N7Y  O9   O16  O  0  1  N  N  N  58.410  26.631  -25.118   4.079   2.895   0.483  O9   N7Y  31  
N7Y  P    P1   P  0  1  N  N  N  59.063  31.277  -28.934  -0.260  -3.470  -0.586  P    N7Y  32  
N7Y  P1   P2   P  0  1  N  N  N  56.178  32.367  -27.989   0.874  -5.997   0.470  P1   N7Y  33  
N7Y  P2   P3   P  0  1  N  N  N  57.461  26.832  -26.392   3.375   1.916  -0.584  P2   N7Y  34  
N7Y  P3   P4   P  0  1  N  N  N  59.875  27.505  -24.427   5.575   3.461   0.665  P3   N7Y  35  
N7Y  H7   H1   H  0  1  N  N  N  55.860  25.585  -30.340  -2.300   2.887  -1.635  H7   N7Y  36  
N7Y  H    H2   H  0  1  N  N  N  57.301  28.504  -32.451  -2.389   0.772   1.522  H    N7Y  37  
N7Y  H1   H3   H  0  1  N  N  N  55.703  27.881  -29.982  -2.938  -0.298  -1.252  H1   N7Y  38  
N7Y  H2   H4   H  0  1  N  N  N  57.260  28.889  -28.527  -0.757  -0.992  -1.557  H2   N7Y  39  
N7Y  H3   H5   H  0  1  N  N  N  59.524  27.848  -29.481   0.114  -0.024   1.172  H3   N7Y  40  
N7Y  H9   H6   H  0  1  N  N  N  56.945  26.328  -28.959   1.681  -0.473  -0.776  H9   N7Y  41  
N7Y  H10  H7   H  0  1  N  N  N  58.475  25.487  -29.381   0.867   0.839  -1.662  H10  N7Y  42  
N7Y  H11  H8   H  0  1  N  N  N  55.151  34.068  -28.443   1.582  -7.350   2.039  H11  N7Y  43  
N7Y  H12  H9   H  0  1  N  N  N  55.751  30.960  -26.579  -0.784  -7.328  -0.052  H12  N7Y  44  
N7Y  H13  H10  H  0  1  N  N  N  60.380  30.808  -27.494  -2.245  -4.162  -1.198  H13  N7Y  45  
N7Y  H5   H11  H  0  1  N  N  N  54.013  23.432  -35.805  -8.099   4.586  -0.464  H5   N7Y  46  
N7Y  H4   H12  H  0  1  N  N  N  54.702  22.806  -34.463  -6.727   4.811  -1.406  H4   N7Y  47  
N7Y  H8   H13  H  0  1  N  N  N  55.658  30.313  -30.221  -4.063  -1.102   0.724  H8   N7Y  48  
N7Y  H6   H14  H  0  1  N  N  N  56.222  27.016  -36.577  -7.064   1.280   2.502  H6   N7Y  49  
N7Y  H14  H15  H  0  1  N  N  N  60.746  26.404  -22.948   6.660   4.316   2.363  H14  N7Y  50  
N7Y  H15  H16  H  0  1  N  N  N  60.378  29.361  -25.099   5.205   5.436  -0.204  H15  N7Y  51  
N7Y  H16  H17  H  0  1  N  N  N  55.553  26.200  -26.438   2.586   3.490  -1.886  H16  N7Y  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N7Y  N1   C1   DOUB  Y  N   1  
N7Y  N1   C    SING  Y  N   2  
N7Y  C1   N2   SING  Y  N   3  
N7Y  N    C    SING  N  N   4  
N7Y  C    C3   DOUB  Y  N   5  
N7Y  N2   C2   DOUB  Y  N   6  
N7Y  C2   C3   SING  Y  N   7  
N7Y  C2   N4   SING  Y  N   8  
N7Y  C3   N3   SING  Y  N   9  
N7Y  N4   C5   SING  N  N  10  
N7Y  N4   C4   SING  Y  N  11  
N7Y  N3   C4   DOUB  Y  N  12  
N7Y  C5   O15  SING  N  N  13  
N7Y  C5   C6   SING  N  N  14  
N7Y  O15  C8   SING  N  N  15  
N7Y  O    C6   SING  N  N  16  
N7Y  C6   C7   SING  N  N  17  
N7Y  O1   C7   SING  N  N  18  
N7Y  O1   P    SING  N  N  19  
N7Y  O2   P    DOUB  N  N  20  
N7Y  C8   C7   SING  N  N  21  
N7Y  C8   C9   SING  N  N  22  
N7Y  C9   O8   SING  N  N  23  
N7Y  P    O3   SING  N  N  24  
N7Y  P    O7   SING  N  N  25  
N7Y  O4   P1   DOUB  N  N  26  
N7Y  O3   P1   SING  N  N  27  
N7Y  P1   O5   SING  N  N  28  
N7Y  P1   O6   SING  N  N  29  
N7Y  O8   P2   SING  N  N  30  
N7Y  O13  P2   DOUB  N  N  31  
N7Y  P2   O14  SING  N  N  32  
N7Y  P2   O9   SING  N  N  33  
N7Y  O10  P3   DOUB  N  N  34  
N7Y  O9   P3   SING  N  N  35  
N7Y  O12  P3   SING  N  N  36  
N7Y  P3   O11  SING  N  N  37  
N7Y  C4   H7   SING  N  N  38  
N7Y  C5   H    SING  N  N  39  
N7Y  C6   H1   SING  N  N  40  
N7Y  C7   H2   SING  N  N  41  
N7Y  C8   H3   SING  N  N  42  
N7Y  C9   H9   SING  N  N  43  
N7Y  C9   H10  SING  N  N  44  
N7Y  O5   H11  SING  N  N  45  
N7Y  O6   H12  SING  N  N  46  
N7Y  O7   H13  SING  N  N  47  
N7Y  N    H5   SING  N  N  48  
N7Y  N    H4   SING  N  N  49  
N7Y  O    H8   SING  N  N  50  
N7Y  C1   H6   SING  N  N  51  
N7Y  O11  H14  SING  N  N  52  
N7Y  O12  H15  SING  N  N  53  
N7Y  O14  H16  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N7Y  SMILES            ACDLabs               12.01  "O(P(=O)(O)O)P(O)(OC1C(C(OC1COP(=O)(O)OP(=O)(O)O)n2cnc3c(ncnc23)N)O)=O"  
N7Y  InChI             InChI                 1.03   "InChI=1S/C10H17N5O16P4/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(29-35(25,26)31-33(20,21)22)4(28-10)1-27-34(23,24)30-32(17,18)19/h2-4,6-7,10,16H,1H2,(H,23,24)(H,25,26)(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1"  
N7Y  InChIKey          InChI                 1.03   DWZMGWMGGHNJLF-KQYNXXCUSA-N  
N7Y  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H]3O"  
N7Y  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]3O"  
N7Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)N"  
N7Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N7Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "adenosine 3',5'-bis(trihydrogen diphosphate)"  
N7Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N7Y  "Create component"  2019-05-06  RCSB  
N7Y  "Initial release"   2019-11-06  RCSB  
##
