data_N5Y
# 
_chem_comp.id                                    N5Y 
_chem_comp.name                                  "N-(6-amino-1-benzyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-03 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.371 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N5Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ASY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N5Y CAY  CAY  C 0 1 Y N N -12.790 -43.121 20.241 -4.190 -0.353 -0.580 CAY  N5Y 1  
N5Y CAZ  CAZ  C 0 1 Y N N -13.915 -43.886 20.530 -5.318 -0.138 0.190  CAZ  N5Y 2  
N5Y CBA  CBA  C 0 1 Y N N -13.792 -45.153 21.101 -5.325 -0.503 1.523  CBA  N5Y 3  
N5Y CAX  CAX  C 0 1 Y N N -12.541 -45.661 21.398 -4.203 -1.081 2.087  CAX  N5Y 4  
N5Y CAW  CAW  C 0 1 Y N N -11.415 -44.896 21.105 -3.075 -1.296 1.318  CAW  N5Y 5  
N5Y CAV  CAV  C 0 1 Y N N -11.532 -43.620 20.540 -3.068 -0.932 -0.016 CAV  N5Y 6  
N5Y CAU  CAU  C 0 1 N N N -10.349 -42.942 20.276 -1.840 -1.171 -0.856 CAU  N5Y 7  
N5Y NAN  NAN  N 0 1 N N N -10.293 -41.446 20.401 -0.967 0.003  -0.790 NAN  N5Y 8  
N5Y CAO  CAO  C 0 1 N N N -9.718  -40.840 21.474 -0.002 0.083  0.188  CAO  N5Y 9  
N5Y NAP  NAP  N 0 1 N N N -9.254  -41.555 22.515 0.147  -0.932 1.102  NAP  N5Y 10 
N5Y CAM  CAM  C 0 1 N N N -10.720 -40.716 19.368 -1.109 0.994  -1.689 CAM  N5Y 11 
N5Y OAL  OAL  O 0 1 N N N -11.200 -41.273 18.389 -1.964 0.902  -2.548 OAL  N5Y 12 
N5Y NAD  NAD  N 0 1 N N N -10.653 -39.334 19.376 -0.322 2.084  -1.654 NAD  N5Y 13 
N5Y CAE  CAE  C 0 1 N N N -10.106 -38.658 20.454 0.634  2.215  -0.714 CAE  N5Y 14 
N5Y OAA  OAA  O 0 1 N N N -10.086 -37.426 20.414 1.342  3.207  -0.692 OAA  N5Y 15 
N5Y CAF  CAF  C 0 1 N N N -9.654  -39.423 21.549 0.814  1.195  0.239  CAF  N5Y 16 
N5Y NAG  NAG  N 0 1 N N N -9.042  -38.800 22.599 1.812  1.306  1.229  NAG  N5Y 17 
N5Y OAC  OAC  O 0 1 N N N -8.808  -37.331 24.264 3.635  0.461  2.178  OAC  N5Y 18 
N5Y CA0  CA0  C 0 1 N N N -9.549  -37.889 23.440 2.807  0.399  1.288  CA0  N5Y 19 
N5Y CAT  CAT  C 0 1 Y N N -10.922 -37.590 23.420 2.893  -0.672 0.273  CAT  N5Y 20 
N5Y CAS  CAS  C 0 1 Y N N -11.293 -36.279 23.685 3.546  -1.869 0.569  CAS  N5Y 21 
N5Y CAR  CAR  C 0 1 Y N N -12.629 -35.921 23.690 3.622  -2.864 -0.383 CAR  N5Y 22 
N5Y CAI  CAI  C 0 1 Y N N -13.624 -36.849 23.457 3.052  -2.677 -1.630 CAI  N5Y 23 
N5Y CAJ  CAJ  C 0 1 Y N N -13.270 -38.172 23.204 2.404  -1.493 -1.931 CAJ  N5Y 24 
N5Y CAA  CAA  C 0 1 N N N -7.576  -38.947 22.679 1.768  2.408  2.194  CAA  N5Y 25 
N5Y CAK  CAK  C 0 1 Y N N -11.926 -38.540 23.189 2.316  -0.492 -0.985 CAK  N5Y 26 
N5Y HAW  HAW  H 0 1 N N N -10.434 -45.294 21.317 -2.198 -1.747 1.759  HAW  N5Y 27 
N5Y HAX  HAX  H 0 1 N N N -12.439 -46.636 21.850 -4.208 -1.365 3.129  HAX  N5Y 28 
N5Y HBA  HBA  H 0 1 N N N -14.675 -45.738 21.311 -6.206 -0.335 2.124  HBA  N5Y 29 
N5Y HAZ  HAZ  H 0 1 N N N -14.897 -43.494 20.309 -6.194 0.314  -0.251 HAZ  N5Y 30 
N5Y HAY  HAY  H 0 1 N N N -12.896 -42.147 19.788 -4.186 -0.072 -1.623 HAY  N5Y 31 
N5Y HAU1 HAU1 H 0 0 N N N -9.592  -43.346 20.964 -1.306 -2.043 -0.479 HAU1 N5Y 32 
N5Y HAU2 HAU2 H 0 0 N N N -10.069 -43.184 19.240 -2.136 -1.345 -1.891 HAU2 N5Y 33 
N5Y HAP1 HAP1 H 0 0 N N N -8.870  -40.936 23.200 -0.344 -1.761 0.990  HAP1 N5Y 34 
N5Y HAP2 HAP2 H 0 0 N N N -10.004 -42.078 22.921 0.742  -0.819 1.860  HAP2 N5Y 35 
N5Y HAD  HAD  H 0 1 N N N -11.003 -38.817 18.595 -0.445 2.785  -2.314 HAD  N5Y 36 
N5Y HAA1 HAA1 H 0 0 N N N -7.200  -38.406 23.560 1.275  2.073  3.106  HAA1 N5Y 37 
N5Y HAA2 HAA2 H 0 0 N N N -7.319  -40.013 22.767 2.783  2.730  2.425  HAA2 N5Y 38 
N5Y HAA3 HAA3 H 0 0 N N N -7.116  -38.532 21.770 1.211  3.243  1.766  HAA3 N5Y 39 
N5Y HAI  HAI  H 0 1 N N N -14.663 -36.553 23.471 3.118  -3.458 -2.374 HAI  N5Y 40 
N5Y HAJ  HAJ  H 0 1 N N N -14.036 -38.911 23.020 1.961  -1.353 -2.906 HAJ  N5Y 41 
N5Y HAR  HAR  H 0 1 N N N -12.900 -34.893 23.880 4.127  -3.791 -0.155 HAR  N5Y 42 
N5Y HAK  HAK  H 0 1 N N N -11.655 -39.568 22.997 1.809  0.432  -1.221 HAK  N5Y 43 
N5Y HAS  HAS  H 0 1 N N N -10.536 -35.536 23.888 3.991  -2.016 1.542  HAS  N5Y 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N5Y CAW CAX  DOUB Y N 1  
N5Y CAW CAV  SING Y N 2  
N5Y CAX CBA  SING Y N 3  
N5Y CBA CAZ  DOUB Y N 4  
N5Y CAZ CAY  SING Y N 5  
N5Y CAY CAV  DOUB Y N 6  
N5Y CAV CAU  SING N N 7  
N5Y CAU NAN  SING N N 8  
N5Y NAN CAO  SING N N 9  
N5Y NAN CAM  SING N N 10 
N5Y CAO NAP  SING N N 11 
N5Y CAO CAF  DOUB N N 12 
N5Y CAM OAL  DOUB N N 13 
N5Y CAM NAD  SING N N 14 
N5Y NAD CAE  SING N N 15 
N5Y CAE OAA  DOUB N N 16 
N5Y CAE CAF  SING N N 17 
N5Y CAF NAG  SING N N 18 
N5Y NAG CA0  SING N N 19 
N5Y NAG CAA  SING N N 20 
N5Y OAC CA0  DOUB N N 21 
N5Y CAI CAJ  DOUB Y N 22 
N5Y CAI CAR  SING Y N 23 
N5Y CAJ CAK  SING Y N 24 
N5Y CA0 CAT  SING N N 25 
N5Y CAK CAT  DOUB Y N 26 
N5Y CAT CAS  SING Y N 27 
N5Y CAS CAR  DOUB Y N 28 
N5Y CAW HAW  SING N N 29 
N5Y CAX HAX  SING N N 30 
N5Y CBA HBA  SING N N 31 
N5Y CAZ HAZ  SING N N 32 
N5Y CAY HAY  SING N N 33 
N5Y CAU HAU1 SING N N 34 
N5Y CAU HAU2 SING N N 35 
N5Y NAP HAP1 SING N N 36 
N5Y NAP HAP2 SING N N 37 
N5Y NAD HAD  SING N N 38 
N5Y CAA HAA1 SING N N 39 
N5Y CAA HAA2 SING N N 40 
N5Y CAA HAA3 SING N N 41 
N5Y CAI HAI  SING N N 42 
N5Y CAJ HAJ  SING N N 43 
N5Y CAR HAR  SING N N 44 
N5Y CAK HAK  SING N N 45 
N5Y CAS HAS  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N5Y SMILES           ACDLabs              12.01 "O=C(c1ccccc1)N(C2=C(N)N(C(=O)NC2=O)Cc3ccccc3)C"                                                                                     
N5Y InChI            InChI                1.03  "InChI=1S/C19H18N4O3/c1-22(18(25)14-10-6-3-7-11-14)15-16(20)23(19(26)21-17(15)24)12-13-8-4-2-5-9-13/h2-11H,12,20H2,1H3,(H,21,24,26)" 
N5Y InChIKey         InChI                1.03  SVEXWTOZCLVIEL-UHFFFAOYSA-N                                                                                                          
N5Y SMILES_CANONICAL CACTVS               3.385 "CN(C(=O)c1ccccc1)C2=C(N)N(Cc3ccccc3)C(=O)NC2=O"                                                                                     
N5Y SMILES           CACTVS               3.385 "CN(C(=O)c1ccccc1)C2=C(N)N(Cc3ccccc3)C(=O)NC2=O"                                                                                     
N5Y SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)N)C(=O)c3ccccc3"                                                                                     
N5Y SMILES           "OpenEye OEToolkits" 1.9.2 "CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)N)C(=O)c3ccccc3"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N5Y "SYSTEMATIC NAME" ACDLabs              12.01 "N-(6-amino-1-benzyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-N-methylbenzamide"     
N5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[6-azanyl-2,4-bis(oxidanylidene)-1-(phenylmethyl)pyrimidin-5-yl]-N-methyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N5Y "Create component"  2012-05-03 EBI  
N5Y "Initial release"   2012-10-26 RCSB 
N5Y "Modify descriptor" 2014-09-05 RCSB 
# 
