data_N2Y
# 
_chem_comp.id                                    N2Y 
_chem_comp.name                                  "(2Z)-1-[(6-chloropyridin-3-yl)methyl]imidazolidin-2-imine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H11 Cl N4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-21 
_chem_comp.pdbx_modified_date                    2015-01-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        210.663 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WTN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2Y N2  N2  N  0 1 N N N 1.507 22.898 16.861 -2.571 -2.023 0.025  N2  N2Y 1  
N2Y N3  N3  N  0 1 N N N 2.329 22.410 14.681 -2.175 0.252  0.485  N3  N2Y 2  
N2Y C1  C1  C  0 1 N N N 2.154 23.244 15.820 -2.792 -0.758 -0.200 C1  N2Y 3  
N2Y N4  N4  N  0 1 N N N 2.786 24.482 15.631 -3.666 -0.299 -1.148 N4  N2Y 4  
N2Y C2  C2  C  0 1 N N N 3.421 24.510 14.319 -3.665 1.170  -1.129 C2  N2Y 5  
N2Y C3  C3  C  0 1 N N N 3.121 23.147 13.685 -2.658 1.543  -0.026 C3  N2Y 6  
N2Y C4  C4  C  0 1 Y N N 4.704 17.812 14.124 2.700  0.009  -0.082 C4  N2Y 7  
N2Y CL1 CL1 CL 0 0 N N N 5.862 16.533 13.987 4.301  0.022  -0.752 CL1 N2Y 8  
N2Y N6  N6  N  0 1 Y N N 5.054 18.970 14.729 2.141  1.144  0.295  N6  N2Y 9  
N2Y C5  C5  C  0 1 Y N N 4.185 19.993 14.856 0.927  1.182  0.808  C5  N2Y 10 
N2Y C6  C6  C  0 1 Y N N 2.845 19.891 14.347 0.191  0.023  0.971  C6  N2Y 11 
N2Y C7  C7  C  0 1 Y N N 2.473 18.675 13.711 0.745  -1.189 0.587  C7  N2Y 12 
N2Y C8  C8  C  0 1 Y N N 3.400 17.620 13.591 2.021  -1.189 0.046  C8  N2Y 13 
N2Y C9  C9  C  0 1 N N N 1.821 21.035 14.469 -1.195 0.076  1.559  C9  N2Y 14 
N2Y H1  H1  H  0 1 N N N 1.495 23.621 17.552 -3.039 -2.697 -0.493 H1  N2Y 15 
N2Y H3  H3  H  0 1 N N N 4.507 24.655 14.421 -3.337 1.562  -2.092 H3  N2Y 16 
N2Y H4  H4  H  0 1 N N N 2.546 23.274 12.756 -3.152 2.105  0.766  H4  N2Y 17 
N2Y H5  H5  H  0 1 N N N 4.500 20.902 15.347 0.502  2.129  1.105  H5  N2Y 18 
N2Y H6  H6  H  0 1 N N N 1.474 18.559 13.317 0.193  -2.110 0.703  H6  N2Y 19 
N2Y H7  H7  H  0 1 N N N 3.128 16.693 13.108 2.483  -2.115 -0.264 H7  N2Y 20 
N2Y H8  H8  H  0 1 N N N 1.231 21.045 13.541 -1.263 0.913  2.254  H8  N2Y 21 
N2Y H9  H9  H  0 1 N N N 1.164 20.796 15.318 -1.401 -0.854 2.089  H9  N2Y 22 
N2Y H2  H2  H  0 1 N N N 2.799 25.230 16.294 -4.200 -0.854 -1.737 H2  N2Y 23 
N2Y H10 H10 H  0 1 N N N 2.999 25.320 13.706 -4.657 1.548  -0.883 H10 N2Y 24 
N2Y H11 H11 H  0 1 N N N 4.057 22.611 13.467 -1.832 2.119  -0.444 H11 N2Y 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2Y C8  C7  SING Y N 1  
N2Y C8  C4  DOUB Y N 2  
N2Y C3  C2  SING N N 3  
N2Y C3  N3  SING N N 4  
N2Y C7  C6  DOUB Y N 5  
N2Y CL1 C4  SING N N 6  
N2Y C4  N6  SING Y N 7  
N2Y C2  N4  SING N N 8  
N2Y C6  C9  SING N N 9  
N2Y C6  C5  SING Y N 10 
N2Y C9  N3  SING N N 11 
N2Y N3  C1  SING N N 12 
N2Y N6  C5  DOUB Y N 13 
N2Y N4  C1  SING N N 14 
N2Y C1  N2  DOUB N N 15 
N2Y N2  H1  SING N N 16 
N2Y C2  H3  SING N N 17 
N2Y C3  H4  SING N N 18 
N2Y C5  H5  SING N N 19 
N2Y C7  H6  SING N N 20 
N2Y C8  H7  SING N N 21 
N2Y C9  H8  SING N N 22 
N2Y C9  H9  SING N N 23 
N2Y N4  H2  SING N N 24 
N2Y C2  H10 SING N N 25 
N2Y C3  H11 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2Y SMILES           ACDLabs              12.01 "Clc1ncc(cc1)CN2C(=[N@H])NCC2"                                                         
N2Y InChI            InChI                1.03  "InChI=1S/C9H11ClN4/c10-8-2-1-7(5-13-8)6-14-4-3-12-9(14)11/h1-2,5H,3-4,6H2,(H2,11,12)" 
N2Y InChIKey         InChI                1.03  UEQZFAGVRGWPDK-UHFFFAOYSA-N                                                            
N2Y SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(CN2CCNC2=N)cn1"                                                               
N2Y SMILES           CACTVS               3.385 "Clc1ccc(CN2CCNC2=N)cn1"                                                               
N2Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C\1/NCCN1Cc2ccc(nc2)Cl"                                                         
N2Y SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(ncc1CN2CCNC2=N)Cl"                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N2Y "SYSTEMATIC NAME" ACDLabs              12.01 "(2Z)-1-[(6-chloropyridin-3-yl)methyl]imidazolidin-2-imine" 
N2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(6-chloranylpyridin-3-yl)methyl]imidazolidin-2-imine"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2Y "Create component" 2014-04-21 PDBJ 
N2Y "Initial release"  2015-02-04 RCSB 
# 
