data_LKY
#

_chem_comp.id                                   LKY
_chem_comp.name                                 "3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H31 F N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-28
_chem_comp.pdbx_modified_date                   2020-02-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       462.559
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LKY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6O3Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LKY  C1   C1   C  0  1  Y  N  N   4.748  -28.121  14.867   -0.988   0.046   1.252  C1   LKY   1  
LKY  C11  C2   C  0  1  N  N  N  11.504  -24.645  14.945    6.199  -0.115  -1.561  C11  LKY   2  
LKY  C12  C3   C  0  1  N  N  N  12.412  -24.309  16.108    7.664  -0.406  -1.947  C12  LKY   3  
LKY  C13  C4   C  0  1  N  N  N  13.222  -23.093  15.738    8.361   0.959  -2.087  C13  LKY   4  
LKY  C14  C5   C  0  1  N  N  N  12.989  -22.814  14.273    7.295   2.031  -1.781  C14  LKY   5  
LKY  C15  C6   C  0  1  N  N  N  11.870  -23.718  13.811    6.249   1.290  -0.912  C15  LKY   6  
LKY  C16  C7   C  0  1  N  N  S   7.786  -24.973  15.139    3.930  -2.042   0.863  C16  LKY   7  
LKY  C18  C8   C  0  1  N  N  N   7.147  -24.010  14.168    5.120  -2.758   1.506  C18  LKY   8  
LKY  C19  C9   C  0  1  N  N  N   7.045  -26.271  15.007    3.184  -1.228   1.924  C19  LKY   9  
LKY  C2   C10  C  0  1  N  N  N   5.191  -27.931  13.460   -0.967  -1.427   1.572  C2   LKY  10  
LKY  C20  C11  C  0  1  Y  N  N   5.298  -28.633  17.137    0.068   2.194   1.304  C20  LKY  11  
LKY  C21  C12  C  0  1  Y  N  N   3.976  -28.485  17.491   -1.032   2.755   0.676  C21  LKY  12  
LKY  C23  C13  C  0  1  Y  N  N   3.040  -28.158  16.532   -2.112   1.962   0.334  C23  LKY  13  
LKY  C24  C14  C  0  1  Y  N  N   3.421  -27.975  15.220   -2.093   0.604   0.622  C24  LKY  14  
LKY  C26  C15  C  0  1  N  N  N   1.452  -26.766  14.579   -4.402   0.352   0.109  C26  LKY  15  
LKY  C28  C16  C  0  1  Y  N  N   0.502  -26.473  13.510   -5.533  -0.480  -0.354  C28  LKY  16  
LKY  C29  C17  C  0  1  Y  N  N   0.803  -26.783  12.207   -5.342  -1.839  -0.612  C29  LKY  17  
LKY  C3   C18  C  0  1  Y  N  N   5.679  -28.450  15.828    0.089   0.842   1.591  C3   LKY  18  
LKY  C30  C19  C  0  1  Y  N  N  -0.115  -26.487  11.225   -6.399  -2.619  -1.040  C30  LKY  19  
LKY  C31  C20  C  0  1  Y  N  N  -1.316  -25.898  11.552   -7.649  -2.061  -1.216  C31  LKY  20  
LKY  C32  C21  C  0  1  Y  N  N  -1.606  -25.599  12.865   -7.854  -0.702  -0.961  C32  LKY  21  
LKY  C33  C22  C  0  1  N  N  N  -2.856  -24.992  13.211   -9.152  -0.126  -1.144  C33  LKY  22  
LKY  C35  C23  C  0  1  Y  N  N  -0.689  -25.886  13.849   -6.793   0.090  -0.529  C35  LKY  23  
LKY  C4   C24  C  0  1  N  N  N   7.109  -28.622  15.451    1.287   0.236   2.274  C4   LKY  24  
LKY  C6   C25  C  0  1  N  N  N   9.214  -27.547  14.942    2.714   0.551   0.344  C6   LKY  25  
LKY  C7   C26  C  0  1  N  N  N   9.565  -26.336  14.115    3.449  -0.193  -0.787  C7   LKY  26  
LKY  C9   C27  C  0  1  N  N  N  10.111  -24.313  15.372    5.702  -1.137  -0.571  C9   LKY  27  
LKY  F22  F1   F  0  1  N  N  N   3.596  -28.669  18.781   -1.049   4.077   0.398  F22  LKY  28  
LKY  N25  N1   N  0  1  N  N  N   2.459  -27.642  14.252   -3.184  -0.200   0.278  N25  LKY  29  
LKY  N34  N2   N  0  1  N  N  N  -3.874  -24.515  13.505  -10.182   0.332  -1.289  N34  LKY  30  
LKY  N5   N3   N  0  1  N  N  N   7.873  -27.366  15.545    2.137  -0.427   1.276  N5   LKY  31  
LKY  N8   N4   N  0  1  N  N  N   9.179  -25.153  14.826    4.412  -1.125  -0.182  N8   LKY  32  
LKY  O10  O1   O  0  1  N  N  N   9.853  -23.388  16.127    6.463  -1.969  -0.124  O10  LKY  33  
LKY  O27  O2   O  0  1  N  N  N   1.283  -26.224  15.659   -4.570   1.534   0.338  O27  LKY  34  
LKY  H1   H1   H  0  1  N  N  N  11.600  -25.701  14.651    5.566  -0.106  -2.448  H1   LKY  35  
LKY  H2   H2   H  0  1  N  N  N  11.808  -24.096  17.002    8.147  -0.993  -1.166  H2   LKY  36  
LKY  H3   H3   H  0  1  N  N  N  14.290  -23.286  15.917    9.182   1.034  -1.374  H3   LKY  37  
LKY  H4   H4   H  0  1  N  N  N  13.904  -23.026  13.700    7.735   2.859  -1.225  H4   LKY  38  
LKY  H5   H5   H  0  1  N  N  N  10.996  -23.112  13.530    5.277   1.780  -0.976  H5   LKY  39  
LKY  H6   H6   H  0  1  N  N  N   7.671  -24.588  16.163    3.256  -2.776   0.423  H6   LKY  40  
LKY  H7   H7   H  0  1  N  N  N   6.084  -23.884  14.421    4.775  -3.336   2.364  H7   LKY  41  
LKY  H8   H8   H  0  1  N  N  N   7.656  -23.037  14.229    5.578  -3.427   0.778  H8   LKY  42  
LKY  H9   H9   H  0  1  N  N  N   7.236  -24.407  13.146    5.853  -2.021   1.835  H9   LKY  43  
LKY  H10  H10  H  0  1  N  N  N   6.102  -26.214  15.570    2.728  -1.905   2.648  H10  LKY  44  
LKY  H11  H11  H  0  1  N  N  N   6.828  -26.463  13.946    3.884  -0.567   2.435  H11  LKY  45  
LKY  H12  H12  H  0  1  N  N  N   5.462  -26.877  13.299   -0.537  -1.974   0.733  H12  LKY  46  
LKY  H13  H13  H  0  1  N  N  N   6.065  -28.568  13.262   -0.364  -1.596   2.464  H13  LKY  47  
LKY  H14  H14  H  0  1  N  N  N   4.373  -28.207  12.778   -1.985  -1.775   1.750  H14  LKY  48  
LKY  H15  H15  H  0  1  N  N  N   6.033  -28.892  17.884    0.911   2.814   1.570  H15  LKY  49  
LKY  H16  H16  H  0  1  N  N  N   2.003  -28.045  16.811   -2.970   2.399  -0.155  H16  LKY  50  
LKY  H17  H17  H  0  1  N  N  N   1.744  -27.251  11.957   -4.366  -2.281  -0.477  H17  LKY  51  
LKY  H18  H18  H  0  1  N  N  N   0.108  -26.718  10.194   -6.246  -3.669  -1.239  H18  LKY  52  
LKY  H19  H19  H  0  1  N  N  N  -2.033  -25.670  10.777   -8.471  -2.677  -1.551  H19  LKY  53  
LKY  H20  H20  H  0  1  N  N  N  -0.906  -25.651  14.881   -6.946   1.140  -0.327  H20  LKY  54  
LKY  H21  H21  H  0  1  N  N  N   7.159  -28.988  14.415    1.856   1.020   2.773  H21  LKY  55  
LKY  H22  H22  H  0  1  N  N  N   7.565  -29.363  16.124    0.954  -0.496   3.011  H22  LKY  56  
LKY  H23  H23  H  0  1  N  N  N   9.209  -28.440  14.300    3.421   1.187   0.877  H23  LKY  57  
LKY  H24  H24  H  0  1  N  N  N   9.960  -27.674  15.740    1.919   1.165  -0.078  H24  LKY  58  
LKY  H25  H25  H  0  1  N  N  N   9.031  -26.379  13.154    2.727  -0.750  -1.386  H25  LKY  59  
LKY  H26  H26  H  0  1  N  N  N  10.649  -26.318  13.931    3.977   0.522  -1.417  H26  LKY  60  
LKY  H27  H27  H  0  1  N  N  N   2.506  -28.038  13.335   -3.064  -1.156   0.161  H27  LKY  61  
LKY  H29  H29  H  0  1  N  N  N  13.084  -25.156  16.312    7.701  -0.944  -2.895  H29  LKY  62  
LKY  H30  H30  H  0  1  N  N  N  12.899  -22.231  16.340    8.737   1.084  -3.103  H30  LKY  63  
LKY  H31  H31  H  0  1  N  N  N  12.704  -21.761  14.132    6.841   2.391  -2.704  H31  LKY  64  
LKY  H32  H32  H  0  1  N  N  N  12.203  -24.307  12.943    6.583   1.225   0.123  H32  LKY  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LKY  C30  C31  DOUB  Y  N   1  
LKY  C30  C29  SING  Y  N   2  
LKY  C31  C32  SING  Y  N   3  
LKY  C29  C28  DOUB  Y  N   4  
LKY  C32  C33  SING  N  N   5  
LKY  C32  C35  DOUB  Y  N   6  
LKY  C33  N34  TRIP  N  N   7  
LKY  C2   C1   SING  N  N   8  
LKY  C28  C35  SING  Y  N   9  
LKY  C28  C26  SING  N  N  10  
LKY  C15  C14  SING  N  N  11  
LKY  C15  C11  SING  N  N  12  
LKY  C7   N8   SING  N  N  13  
LKY  C7   C6   SING  N  N  14  
LKY  C18  C16  SING  N  N  15  
LKY  N25  C26  SING  N  N  16  
LKY  N25  C24  SING  N  N  17  
LKY  C14  C13  SING  N  N  18  
LKY  C26  O27  DOUB  N  N  19  
LKY  N8   C16  SING  N  N  20  
LKY  N8   C9   SING  N  N  21  
LKY  C1   C24  DOUB  Y  N  22  
LKY  C1   C3   SING  Y  N  23  
LKY  C6   N5   SING  N  N  24  
LKY  C11  C9   SING  N  N  25  
LKY  C11  C12  SING  N  N  26  
LKY  C19  C16  SING  N  N  27  
LKY  C19  N5   SING  N  N  28  
LKY  C24  C23  SING  Y  N  29  
LKY  C9   O10  DOUB  N  N  30  
LKY  C4   N5   SING  N  N  31  
LKY  C4   C3   SING  N  N  32  
LKY  C13  C12  SING  N  N  33  
LKY  C3   C20  DOUB  Y  N  34  
LKY  C23  C21  DOUB  Y  N  35  
LKY  C20  C21  SING  Y  N  36  
LKY  C21  F22  SING  N  N  37  
LKY  C11  H1   SING  N  N  38  
LKY  C12  H2   SING  N  N  39  
LKY  C13  H3   SING  N  N  40  
LKY  C14  H4   SING  N  N  41  
LKY  C15  H5   SING  N  N  42  
LKY  C16  H6   SING  N  N  43  
LKY  C18  H7   SING  N  N  44  
LKY  C18  H8   SING  N  N  45  
LKY  C18  H9   SING  N  N  46  
LKY  C19  H10  SING  N  N  47  
LKY  C19  H11  SING  N  N  48  
LKY  C2   H12  SING  N  N  49  
LKY  C2   H13  SING  N  N  50  
LKY  C2   H14  SING  N  N  51  
LKY  C20  H15  SING  N  N  52  
LKY  C23  H16  SING  N  N  53  
LKY  C29  H17  SING  N  N  54  
LKY  C30  H18  SING  N  N  55  
LKY  C31  H19  SING  N  N  56  
LKY  C35  H20  SING  N  N  57  
LKY  C4   H21  SING  N  N  58  
LKY  C4   H22  SING  N  N  59  
LKY  C6   H23  SING  N  N  60  
LKY  C6   H24  SING  N  N  61  
LKY  C7   H25  SING  N  N  62  
LKY  C7   H26  SING  N  N  63  
LKY  N25  H27  SING  N  N  64  
LKY  C12  H29  SING  N  N  65  
LKY  C13  H30  SING  N  N  66  
LKY  C14  H31  SING  N  N  67  
LKY  C15  H32  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LKY  SMILES            ACDLabs               12.01  "c1(c(cc(cc1CN2CC(C)N(CC2)C(C3CCCC3)=O)F)NC(=O)c4cc(ccc4)C#N)C"  
LKY  InChI             InChI                 1.03   "InChI=1S/C27H31FN4O2/c1-18-16-31(10-11-32(18)27(34)21-7-3-4-8-21)17-23-13-24(28)14-25(19(23)2)30-26(33)22-9-5-6-20(12-22)15-29/h5-6,9,12-14,18,21H,3-4,7-8,10-11,16-17H2,1-2H3,(H,30,33)/t18-/m0/s1"  
LKY  InChIKey          InChI                 1.03   AQGBWBMWWNRWNU-SFHVURJKSA-N  
LKY  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1CN(CCN1C(=O)C2CCCC2)Cc3cc(F)cc(NC(=O)c4cccc(c4)C#N)c3C"  
LKY  SMILES            CACTVS                3.385  "C[CH]1CN(CCN1C(=O)C2CCCC2)Cc3cc(F)cc(NC(=O)c4cccc(c4)C#N)c3C"  
LKY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(cc(cc1NC(=O)c2cccc(c2)C#N)F)CN3CCN([C@H](C3)C)C(=O)C4CCCC4"  
LKY  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(cc(cc1NC(=O)c2cccc(c2)C#N)F)CN3CCN(C(C3)C)C(=O)C4CCCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LKY  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide"  
LKY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-cyano-~{N}-[3-[[(3~{S})-4-cyclopentylcarbonyl-3-methyl-piperazin-1-yl]methyl]-5-fluoranyl-2-methyl-phenyl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LKY  "Create component"  2019-02-28  RCSB  
LKY  "Initial release"   2020-03-04  RCSB  
##
