data_KXY
# 
_chem_comp.id                                    KXY 
_chem_comp.name                                  "(2R)-2-[4-[bis(fluoranyl)methyl]-6-[2-[4-[[4-(hydroxymethyl)piperidin-1-yl]methyl]phenyl]ethynyl]-7-methyl-indazol-2-yl]-2-spiro[6,7-dihydropyrrolo[1,2-c]imidazole-5,1'-cyclopropane]-1-yl-N-(1,3-thiazol-2-yl)ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H37 F2 N7 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-07 
_chem_comp.pdbx_modified_date                    2022-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        681.797 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KXY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A2D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KXY C2  C1  C 0 1 N N R -7.037  -9.636  22.104 4.749   -0.390 -0.954 C2  KXY 1  
KXY C1  C2  C 0 1 N N N -7.399  -10.415 23.327 5.580   0.864  -0.857 C1  KXY 2  
KXY C6  C3  C 0 1 N N N -9.829  -6.583  24.684 6.950   -4.559 -1.808 C6  KXY 3  
KXY C3  C4  C 0 1 Y N N -7.577  -8.242  22.134 5.444   -1.511 -0.226 C3  KXY 4  
KXY C4  C5  C 0 1 Y N N -8.460  -7.703  23.043 5.852   -2.674 -0.769 C4  KXY 5  
KXY C5  C6  C 0 1 N N N -9.268  -7.937  24.302 5.900   -3.453 -2.065 C5  KXY 6  
KXY C11 C7  C 0 1 N N N -10.753 -4.952  22.777 6.499   -6.007 0.384  C11 KXY 7  
KXY C17 C8  C 0 1 Y N N -2.565  -10.974 20.900 -0.141  -0.499 0.018  C17 KXY 8  
KXY O35 O1  O 0 1 N N N -6.776  -10.341 24.396 6.633   0.848  -0.256 O35 KXY 9  
KXY C33 C9  C 0 1 N N N -2.809  -12.168 19.968 -0.801  -1.387 -1.005 C33 KXY 10 
KXY C37 C10 C 0 1 Y N N -8.997  -11.946 24.271 5.919   3.158  -1.348 C37 KXY 11 
KXY C44 C11 C 0 1 N N N 6.387   -13.850 14.177 -11.564 0.862  -1.648 C44 KXY 12 
KXY C40 C12 C 0 1 Y N N -10.430 -13.328 25.311 7.650   4.428  -0.746 C40 KXY 13 
KXY C16 C13 C 0 1 Y N N -3.623  -10.321 21.482 1.250   -0.284 -0.019 C16 KXY 14 
KXY C15 C14 C 0 1 Y N N -3.462  -9.191  22.373 1.857   0.595  0.993  C15 KXY 15 
KXY C14 C15 C 0 1 Y N N -4.742  -8.769  22.728 3.212   0.624  0.722  C14 KXY 16 
KXY C20 C16 C 0 1 Y N N -2.108  -8.772  22.717 1.029   1.195  1.968  C20 KXY 17 
KXY C26 C17 C 0 1 Y N N 1.974   -12.431 19.774 -4.886  -0.500 1.102  C26 KXY 18 
KXY C27 C18 C 0 1 Y N N 3.195   -11.798 19.816 -5.667  0.115  2.085  C27 KXY 19 
KXY C28 C19 C 0 1 Y N N 4.362   -12.462 19.328 -7.028  -0.101 2.115  C28 KXY 20 
KXY C7  C20 C 0 1 N N N -9.600  -5.703  23.477 6.902   -4.692 -0.275 C7  KXY 21 
KXY N8  N1  N 0 1 Y N N -8.676  -6.410  22.631 6.431   -3.402 0.235  N8  KXY 22 
KXY C9  C21 C 0 1 Y N N -7.991  -6.219  21.486 6.357   -2.653 1.360  C9  KXY 23 
KXY N10 N2  N 0 1 Y N N -7.313  -7.332  21.153 5.766   -1.526 1.075  N10 KXY 24 
KXY C12 C22 C 0 1 N N N -9.622  -4.201  23.492 7.946   -5.515 0.473  C12 KXY 25 
KXY N13 N3  N 0 1 Y N N -5.575  -9.588  22.015 3.436   -0.154 -0.347 N13 KXY 26 
KXY C18 C23 C 0 1 Y N N -1.294  -10.570 21.259 -0.897  0.117  0.998  C18 KXY 27 
KXY C19 C24 C 0 1 Y N N -1.130  -9.474  22.129 -0.302  0.958  1.961  C19 KXY 28 
KXY C21 C25 C 0 1 N N N -1.872  -7.712  23.698 1.629   2.099  3.015  C21 KXY 29 
KXY F22 F1  F 0 1 N N N -2.634  -6.596  23.441 2.761   2.732  2.491  F22 KXY 30 
KXY F23 F2  F 0 1 N N N -2.318  -8.071  24.924 0.689   3.062  3.394  F23 KXY 31 
KXY C24 C26 C 0 1 N N N -0.116  -11.234 20.741 -2.312  -0.102 1.035  C24 KXY 32 
KXY C25 C27 C 0 1 N N N 0.856   -11.736 20.343 -3.472  -0.281 1.065  C25 KXY 33 
KXY C29 C28 C 0 1 Y N N 4.219   -13.758 18.853 -7.622  -0.924 1.174  C29 KXY 34 
KXY C30 C29 C 0 1 Y N N 2.982   -14.415 18.835 -6.857  -1.536 0.198  C30 KXY 35 
KXY C31 C30 C 0 1 Y N N 1.858   -13.747 19.328 -5.493  -1.334 0.158  C31 KXY 36 
KXY C32 C31 C 0 1 N N N 5.465   -14.460 18.289 -9.111  -1.156 1.214  C32 KXY 37 
KXY N34 N4  N 0 1 Y N N -4.935  -10.566 21.292 2.232   -0.707 -0.796 N34 KXY 38 
KXY N36 N5  N 0 1 N N N -8.497  -11.216 23.229 5.152   2.002  -1.437 N36 KXY 39 
KXY S38 S1  S 0 1 Y N N -8.304  -12.061 25.842 5.499   4.667  -2.034 S38 KXY 40 
KXY C39 C32 C 0 1 Y N N -9.573  -13.171 26.350 6.984   5.378  -1.406 C39 KXY 41 
KXY N41 N6  N 0 1 Y N N -10.076 -12.660 24.155 7.053   3.251  -0.727 N41 KXY 42 
KXY C42 C33 C 0 1 N N N 6.460   -15.284 16.165 -11.241 -0.185 0.595  C42 KXY 43 
KXY C43 C34 C 0 1 N N N 6.117   -15.271 14.666 -11.896 0.975  -0.158 C43 KXY 44 
KXY C45 C35 C 0 1 N N N 5.471   -12.814 14.854 -10.043 0.861  -1.826 C45 KXY 45 
KXY C46 C36 C 0 1 N N N 5.673   -12.927 16.366 -9.441  -0.296 -1.024 C46 KXY 46 
KXY N47 N7  N 0 1 N N N 5.506   -14.340 16.812 -9.787  -0.141 0.395  N47 KXY 47 
KXY C48 C37 C 0 1 N N N 7.775   -13.551 14.700 -12.144 -0.441 -2.204 C48 KXY 48 
KXY O49 O2  O 0 1 N N N 8.351   -12.566 13.857 -11.936 -0.491 -3.617 O49 KXY 49 
KXY H1  H1  H 0 1 N N N -7.438  -10.154 21.220 4.621   -0.660 -2.002 H1  KXY 50 
KXY H2  H2  H 0 1 N N N -9.301  -6.180  25.561 6.659   -5.492 -2.289 H2  KXY 51 
KXY H3  H3  H 0 1 N N N -10.903 -6.660  24.907 7.939   -4.243 -2.141 H3  KXY 52 
KXY H4  H4  H 0 1 N N N -10.083 -8.650  24.108 6.218   -2.809 -2.885 H4  KXY 53 
KXY H5  H5  H 0 1 N N N -8.624  -8.326  25.105 4.927   -3.894 -2.281 H5  KXY 54 
KXY H6  H6  H 0 1 N N N -10.820 -4.939  21.679 5.891   -5.951 1.287  H6  KXY 55 
KXY H7  H7  H 0 1 N N N -11.766 -4.968  23.206 6.295   -6.856 -0.269 H7  KXY 56 
KXY H8  H8  H 0 1 N N N -2.856  -13.093 20.561 -1.097  -0.790 -1.868 H8  KXY 57 
KXY H9  H9  H 0 1 N N N -3.759  -12.027 19.433 -0.100  -2.160 -1.322 H9  KXY 58 
KXY H10 H10 H 0 1 N N N -1.986  -12.240 19.242 -1.683  -1.854 -0.567 H10 KXY 59 
KXY H11 H11 H 0 1 N N N 6.336   -13.779 13.080 -11.994 1.709  -2.183 H11 KXY 60 
KXY H12 H12 H 0 1 N N N -11.323 -13.931 25.382 8.599   4.609  -0.264 H12 KXY 61 
KXY H13 H13 H 0 1 N N N -5.014  -7.977  23.410 3.958   1.176  1.275  H13 KXY 62 
KXY H14 H14 H 0 1 N N N 3.271   -10.799 20.218 -5.204  0.757  2.820  H14 KXY 63 
KXY H15 H15 H 0 1 N N N 5.324   -11.971 19.329 -7.633  0.373  2.874  H15 KXY 64 
KXY H16 H16 H 0 1 N N N -7.987  -5.302  20.916 6.727   -2.941 2.333  H16 KXY 65 
KXY H17 H17 H 0 1 N N N -8.883  -3.637  22.904 8.290   -5.135 1.435  H17 KXY 66 
KXY H18 H18 H 0 1 N N N -9.829  -3.666  24.431 8.694   -6.040 -0.121 H18 KXY 67 
KXY H19 H19 H 0 1 N N N -0.116  -9.170  22.343 -0.924  1.422  2.712  H19 KXY 68 
KXY H20 H20 H 0 1 N N N -0.801  -7.461  23.720 1.914   1.507  3.885  H20 KXY 69 
KXY H21 H21 H 0 1 N N N 2.899   -15.419 18.447 -7.327  -2.177 -0.533 H21 KXY 70 
KXY H22 H22 H 0 1 N N N 0.902   -14.249 19.363 -4.896  -1.811 -0.605 H22 KXY 71 
KXY H23 H23 H 0 1 N N N 5.437   -15.524 18.565 -9.335  -2.148 0.822  H23 KXY 72 
KXY H24 H24 H 0 1 N N N 6.366   -13.995 18.715 -9.462  -1.084 2.244  H24 KXY 73 
KXY H25 H25 H 0 1 N N N -8.963  -11.273 22.346 4.310   2.015  -1.918 H25 KXY 74 
KXY H26 H26 H 0 1 N N N -9.654  -13.643 27.318 7.301   6.402  -1.536 H26 KXY 75 
KXY H27 H27 H 0 1 N N N 6.335   -16.296 16.577 -11.463 -0.099 1.659  H27 KXY 76 
KXY H28 H28 H 0 1 N N N 7.496   -14.949 16.323 -11.631 -1.130 0.218  H28 KXY 77 
KXY H29 H29 H 0 1 N N N 5.059   -15.531 14.515 -11.517 1.921  0.228  H29 KXY 78 
KXY H30 H30 H 0 1 N N N 6.752   -15.987 14.124 -12.977 0.933  -0.022 H30 KXY 79 
KXY H31 H31 H 0 1 N N N 5.737   -11.802 14.516 -9.800  0.737  -2.881 H31 KXY 80 
KXY H32 H32 H 0 1 N N N 4.421   -13.021 14.600 -9.634  1.805  -1.466 H32 KXY 81 
KXY H33 H33 H 0 1 N N N 6.686   -12.584 16.622 -9.840  -1.240 -1.394 H33 KXY 82 
KXY H34 H34 H 0 1 N N N 4.932   -12.296 16.878 -8.357  -0.290 -1.137 H34 KXY 83 
KXY H36 H36 H 0 1 N N N 8.387   -14.465 14.681 -11.648 -1.289 -1.733 H36 KXY 84 
KXY H37 H37 H 0 1 N N N 7.713   -13.172 15.731 -13.213 -0.482 -1.993 H37 KXY 85 
KXY H38 H38 H 0 1 N N N 9.226   -12.359 14.163 -12.279 -1.291 -4.037 H38 KXY 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KXY O49 C48 SING N N 1  
KXY C44 C43 SING N N 2  
KXY C44 C48 SING N N 3  
KXY C44 C45 SING N N 4  
KXY C43 C42 SING N N 5  
KXY C45 C46 SING N N 6  
KXY C42 N47 SING N N 7  
KXY C46 N47 SING N N 8  
KXY N47 C32 SING N N 9  
KXY C32 C29 SING N N 10 
KXY C30 C29 DOUB Y N 11 
KXY C30 C31 SING Y N 12 
KXY C29 C28 SING Y N 13 
KXY C31 C26 DOUB Y N 14 
KXY C28 C27 DOUB Y N 15 
KXY C26 C27 SING Y N 16 
KXY C26 C25 SING N N 17 
KXY C33 C17 SING N N 18 
KXY C25 C24 TRIP N N 19 
KXY C24 C18 SING N N 20 
KXY C17 C18 DOUB Y N 21 
KXY C17 C16 SING Y N 22 
KXY N10 C9  DOUB Y N 23 
KXY N10 C3  SING Y N 24 
KXY C18 C19 SING Y N 25 
KXY N34 C16 DOUB Y N 26 
KXY N34 N13 SING Y N 27 
KXY C16 C15 SING Y N 28 
KXY C9  N8  SING Y N 29 
KXY N13 C2  SING N N 30 
KXY N13 C14 SING Y N 31 
KXY C2  C3  SING N N 32 
KXY C2  C1  SING N N 33 
KXY C19 C20 DOUB Y N 34 
KXY C3  C4  DOUB Y N 35 
KXY C15 C20 SING Y N 36 
KXY C15 C14 DOUB Y N 37 
KXY N8  C4  SING Y N 38 
KXY N8  C7  SING N N 39 
KXY C20 C21 SING N N 40 
KXY C11 C7  SING N N 41 
KXY C11 C12 SING N N 42 
KXY C4  C5  SING N N 43 
KXY N36 C1  SING N N 44 
KXY N36 C37 SING N N 45 
KXY C1  O35 DOUB N N 46 
KXY F22 C21 SING N N 47 
KXY C7  C12 SING N N 48 
KXY C7  C6  SING N N 49 
KXY C21 F23 SING N N 50 
KXY N41 C37 DOUB Y N 51 
KXY N41 C40 SING Y N 52 
KXY C37 S38 SING Y N 53 
KXY C5  C6  SING N N 54 
KXY C40 C39 DOUB Y N 55 
KXY S38 C39 SING Y N 56 
KXY C2  H1  SING N N 57 
KXY C6  H2  SING N N 58 
KXY C6  H3  SING N N 59 
KXY C5  H4  SING N N 60 
KXY C5  H5  SING N N 61 
KXY C11 H6  SING N N 62 
KXY C11 H7  SING N N 63 
KXY C33 H8  SING N N 64 
KXY C33 H9  SING N N 65 
KXY C33 H10 SING N N 66 
KXY C44 H11 SING N N 67 
KXY C40 H12 SING N N 68 
KXY C14 H13 SING N N 69 
KXY C27 H14 SING N N 70 
KXY C28 H15 SING N N 71 
KXY C9  H16 SING N N 72 
KXY C12 H17 SING N N 73 
KXY C12 H18 SING N N 74 
KXY C19 H19 SING N N 75 
KXY C21 H20 SING N N 76 
KXY C30 H21 SING N N 77 
KXY C31 H22 SING N N 78 
KXY C32 H23 SING N N 79 
KXY C32 H24 SING N N 80 
KXY N36 H25 SING N N 81 
KXY C39 H26 SING N N 82 
KXY C42 H27 SING N N 83 
KXY C42 H28 SING N N 84 
KXY C43 H29 SING N N 85 
KXY C43 H30 SING N N 86 
KXY C45 H31 SING N N 87 
KXY C45 H32 SING N N 88 
KXY C46 H33 SING N N 89 
KXY C46 H34 SING N N 90 
KXY C48 H36 SING N N 91 
KXY C48 H37 SING N N 92 
KXY O49 H38 SING N N 93 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KXY InChI            InChI                1.06  "InChI=1S/C37H37F2N7O2S/c1-23-27(7-6-24-2-4-25(5-3-24)19-44-15-9-26(21-47)10-16-44)18-28(34(38)39)29-20-46(43-31(23)29)33(35(48)42-36-40-14-17-49-36)32-30-8-11-37(12-13-37)45(30)22-41-32/h2-5,14,17-18,20,22,26,33-34,47H,8-13,15-16,19,21H2,1H3,(H,40,42,48)/t33-/m1/s1" 
KXY InChIKey         InChI                1.06  XGCQKFFIRIFVIZ-MGBGTMOVSA-N                                                                                                                                                                                                                                                 
KXY SMILES_CANONICAL CACTVS               3.385 "Cc1c(cc(C(F)F)c2cn(nc12)[C@@H](C(=O)Nc3sccn3)c4ncn5c4CCC56CC6)C#Cc7ccc(CN8CCC(CO)CC8)cc7"                                                                                                                                                                                  
KXY SMILES           CACTVS               3.385 "Cc1c(cc(C(F)F)c2cn(nc12)[CH](C(=O)Nc3sccn3)c4ncn5c4CCC56CC6)C#Cc7ccc(CN8CCC(CO)CC8)cc7"                                                                                                                                                                                    
KXY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(c2c1nn(c2)[C@H](c3c4n(cn3)C5(CC4)CC5)C(=O)Nc6nccs6)C(F)F)C#Cc7ccc(cc7)CN8CCC(CC8)CO"                                                                                                                                                                               
KXY SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(c2c1nn(c2)C(c3c4n(cn3)C5(CC4)CC5)C(=O)Nc6nccs6)C(F)F)C#Cc7ccc(cc7)CN8CCC(CC8)CO"                                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           KXY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[4-[bis(fluoranyl)methyl]-6-[2-[4-[[4-(hydroxymethyl)piperidin-1-yl]methyl]phenyl]ethynyl]-7-methyl-indazol-2-yl]-2-spiro[6,7-dihydropyrrolo[1,2-c]imidazole-5,1'-cyclopropane]-1-yl-~{N}-(1,3-thiazol-2-yl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KXY "Create component"  2022-06-07 PDBE 
KXY "Modify descriptor" 2022-08-22 RCSB 
KXY "Initial release"   2022-10-19 RCSB 
# 
