data_IDY
#

_chem_comp.id                                   IDY
_chem_comp.name                                 "1-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid"
_chem_comp.type                                 "L-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H12 O10 S"
_chem_comp.mon_nstd_parent_comp_id              IDR
_chem_comp.pdbx_synonyms                        
;methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid; 1-O-methyl-2-O-sulfo-alpha-L-iduronic acid;
1-O-methyl-2-O-sulfo-L-iduronic acid; 1-O-methyl-2-O-sulfo-iduronic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-11-03
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       288.229
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    IDY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3UD7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  IDY  "methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid"  PDB  ?  
2  IDY  "1-O-methyl-2-O-sulfo-alpha-L-iduronic acid"        PDB  ?  
3  IDY  "1-O-methyl-2-O-sulfo-L-iduronic acid"              PDB  ?  
4  IDY  "1-O-methyl-2-O-sulfo-iduronic acid"                PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IDY  S     S     S  0  1  N  N  N  -27.334   -8.937  60.763   2.793   0.460   0.332  S     IDY   1  
IDY  C1    C1    C  0  1  N  N  R  -27.716  -11.289  62.913  -0.060  -1.189   0.575  C1    IDY   2  
IDY  O1    O1    O  0  1  N  N  N  -27.608  -11.265  64.332  -0.642  -2.417   0.133  O1    IDY   3  
IDY  C2    C2    C  0  1  N  N  R  -26.398  -10.852  62.261   0.725  -0.554  -0.576  C2    IDY   4  
IDY  O2    O2    O  0  1  N  N  N  -26.625  -10.295  60.959   1.352   0.647  -0.120  O2    IDY   5  
IDY  C3    C3    C  0  1  N  N  S  -25.348  -11.968  62.253  -0.238  -0.226  -1.721  C3    IDY   6  
IDY  O3    O3    O  0  1  N  N  N  -24.681  -11.857  63.516  -0.816  -1.434  -2.220  O3    IDY   7  
IDY  C4    C4    C  0  1  N  N  S  -25.875  -13.409  62.122  -1.345   0.693  -1.195  C4    IDY   8  
IDY  O4    O4    O  0  1  N  N  N  -25.614  -13.497  60.795  -0.773   1.927  -0.756  O4    IDY   9  
IDY  C5    C5    C  0  1  N  N  R  -27.238  -13.660  62.786  -2.050   0.009  -0.020  C5    IDY  10  
IDY  O5    O5    O  0  1  N  N  N  -28.169  -12.596  62.543  -1.092  -0.296   0.996  O5    IDY  11  
IDY  C6    C6    C  0  1  N  N  N  -27.905  -14.865  62.192  -3.101   0.932   0.541  C6    IDY  12  
IDY  C7    C7    C  0  1  N  N  N  -27.028  -12.083  64.881  -1.305  -3.150   1.166  C7    IDY  13  
IDY  O6A   O61   O  0  1  N  N  N  -27.860  -15.936  62.881  -2.990   1.362   1.664  O6A   IDY  14  
IDY  O6B   O62   O  0  1  N  N  N  -28.539  -14.780  61.077  -4.161   1.275  -0.208  O6B   IDY  15  
IDY  OS1   OS1   O  0  1  N  N  N  -27.901   -8.884  59.381   3.188   1.687   0.932  OS1   IDY  16  
IDY  OS2   OS2   O  0  1  N  N  N  -26.299   -7.905  60.895   2.842  -0.788   1.010  OS2   IDY  17  
IDY  OS3   OS3   O  0  1  N  N  N  -28.403   -8.700  61.794   3.642   0.301  -0.921  OS3   IDY  18  
IDY  H1    H1    H  0  1  N  N  N  -28.452  -10.562  62.540   0.614  -1.385   1.409  H1    IDY  19  
IDY  H2    H2    H  0  1  N  N  N  -25.973  -10.052  62.885   1.486  -1.251  -0.927  H2    IDY  20  
IDY  H3    H3    H  0  1  N  N  N  -24.722  -11.823  61.360   0.305   0.276  -2.521  H3    IDY  21  
IDY  HO3   HO3   H  0  1  N  Y  N  -24.010  -12.526  63.580  -1.438  -1.300  -2.948  HO3   IDY  22  
IDY  H4    H4    H  0  1  N  N  N  -25.452  -14.259  62.677  -2.065   0.888  -1.990  H4    IDY  23  
IDY  HO4   HO4   H  0  1  N  Y  N  -25.874  -14.354  60.477  -1.418   2.558  -0.409  HO4   IDY  24  
IDY  H5    H5    H  0  1  N  N  N  -27.016  -13.769  63.858  -2.520  -0.911  -0.365  H5    IDY  25  
IDY  H7    H7    H  0  1  N  N  N  -27.059  -11.891  65.964  -0.592  -3.397   1.952  H7    IDY  26  
IDY  H7A   H7A   H  0  1  N  N  N  -27.485  -13.061  64.669  -2.110  -2.544   1.582  H7A   IDY  27  
IDY  H7B   H7B   H  0  1  N  N  N  -25.983  -12.084  64.538  -1.720  -4.068   0.750  H7B   IDY  28  
IDY  HO6B  HO62  H  0  0  N  N  N  -28.943  -15.616  60.877  -4.809   1.869   0.195  HO6B  IDY  29  
IDY  HOS3  HOS3  H  0  0  N  N  N  -28.181   -7.934  62.310   4.584   0.175  -0.745  HOS3  IDY  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IDY  S    O2    SING  N  N   1  
IDY  S    OS1   DOUB  N  N   2  
IDY  S    OS2   DOUB  N  N   3  
IDY  S    OS3   SING  N  N   4  
IDY  C1   O1    SING  N  N   5  
IDY  C1   C2    SING  N  N   6  
IDY  C1   O5    SING  N  N   7  
IDY  O1   C7    SING  N  N   8  
IDY  C2   O2    SING  N  N   9  
IDY  C2   C3    SING  N  N  10  
IDY  C3   O3    SING  N  N  11  
IDY  C3   C4    SING  N  N  12  
IDY  C4   O4    SING  N  N  13  
IDY  C4   C5    SING  N  N  14  
IDY  C5   O5    SING  N  N  15  
IDY  C5   C6    SING  N  N  16  
IDY  C6   O6A   DOUB  N  N  17  
IDY  C6   O6B   SING  N  N  18  
IDY  C1   H1    SING  N  N  19  
IDY  C2   H2    SING  N  N  20  
IDY  C3   H3    SING  N  N  21  
IDY  O3   HO3   SING  N  N  22  
IDY  C4   H4    SING  N  N  23  
IDY  O4   HO4   SING  N  N  24  
IDY  C5   H5    SING  N  N  25  
IDY  C7   H7    SING  N  N  26  
IDY  C7   H7A   SING  N  N  27  
IDY  C7   H7B   SING  N  N  28  
IDY  O6B  HO6B  SING  N  N  29  
IDY  OS3  HOS3  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IDY  SMILES            ACDLabs               12.01  "O=C(O)C1OC(OC)C(OS(=O)(=O)O)C(O)C1O"  
IDY  InChI             InChI                 1.03   "InChI=1S/C7H12O10S/c1-15-7-5(17-18(12,13)14)3(9)2(8)4(16-7)6(10)11/h2-5,7-9H,1H3,(H,10,11)(H,12,13,14)/t2-,3-,4+,5+,7+/m0/s1"  
IDY  InChIKey          InChI                 1.03   OBWAEUUFHKKIQN-QVVHOTIMSA-N  
IDY  SMILES_CANONICAL  CACTVS                3.370  "CO[C@@H]1O[C@H]([C@@H](O)[C@H](O)[C@H]1O[S](O)(=O)=O)C(O)=O"  
IDY  SMILES            CACTVS                3.370  "CO[CH]1O[CH]([CH](O)[CH](O)[CH]1O[S](O)(=O)=O)C(O)=O"  
IDY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CO[C@H]1[C@@H]([C@H]([C@@H]([C@@H](O1)C(=O)O)O)O)OS(=O)(=O)O"  
IDY  SMILES            "OpenEye OEToolkits"  1.7.2  "COC1C(C(C(C(O1)C(=O)O)O)O)OS(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IDY  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid"  
IDY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2R,3S,4S,5R,6R)-6-methoxy-3,4-bis(oxidanyl)-5-sulfooxy-oxane-2-carboxylic acid"  
#
_pdbx_chem_comp_related.comp_id            IDY
_pdbx_chem_comp_related.related_comp_id    IDR
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  IDY  C1    IDR  C1    "Carbohydrate core"  
 2  IDY  C2    IDR  C2    "Carbohydrate core"  
 3  IDY  C3    IDR  C3    "Carbohydrate core"  
 4  IDY  C4    IDR  C4    "Carbohydrate core"  
 5  IDY  C5    IDR  C5    "Carbohydrate core"  
 6  IDY  C6    IDR  C6    "Carbohydrate core"  
 7  IDY  O1    IDR  O1    "Carbohydrate core"  
 8  IDY  O2    IDR  O2    "Carbohydrate core"  
 9  IDY  O3    IDR  O3    "Carbohydrate core"  
10  IDY  O4    IDR  O4    "Carbohydrate core"  
11  IDY  O5    IDR  O5    "Carbohydrate core"  
12  IDY  O6A   IDR  O6A   "Carbohydrate core"  
13  IDY  O6B   IDR  O6B   "Carbohydrate core"  
14  IDY  H1    IDR  H1    "Carbohydrate core"  
15  IDY  H2    IDR  H2    "Carbohydrate core"  
16  IDY  H3    IDR  H3    "Carbohydrate core"  
17  IDY  H4    IDR  H4    "Carbohydrate core"  
18  IDY  H5    IDR  H5    "Carbohydrate core"  
19  IDY  HO3   IDR  HO3   "Carbohydrate core"  
20  IDY  HO4   IDR  HO4   "Carbohydrate core"  
21  IDY  HO6B  IDR  HO6B  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
IDY  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
IDY  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
IDY  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
IDY  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IDY  "Create component"          2011-11-03  PDBJ  
IDY  "Initial release"           2012-11-23  RCSB  
IDY  "Other modification"        2020-07-03  RCSB  
IDY  "Modify parent residue"     2020-07-17  RCSB  
IDY  "Modify name"               2020-07-17  RCSB  
IDY  "Modify synonyms"           2020-07-17  RCSB  
IDY  "Modify linking type"       2020-07-17  RCSB  
IDY  "Modify atom id"            2020-07-17  RCSB  
IDY  "Modify component atom id"  2020-07-17  RCSB  
IDY  "Modify leaving atom flag"  2020-07-17  RCSB  
##
