data_H6Y
# 
_chem_comp.id                                    H6Y 
_chem_comp.name                                  "8-OXO-ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-01-06 
_chem_comp.pdbx_modified_date                    2016-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.180 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H6Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FSK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H6Y PG     PG     P 0 1 N N N 3.827  20.782 2.542  -6.609 -1.598 0.823  PG     H6Y 1  
H6Y O1G    O1G    O 0 1 N N N 2.539  20.836 3.256  -7.595 -0.733 0.137  O1G    H6Y 2  
H6Y O2G    O2G    O 0 1 N N N 3.701  20.189 1.128  -6.973 -1.690 2.388  O2G    H6Y 3  
H6Y O3G    O3G    O 0 1 N N N 4.930  20.025 3.317  -6.646 -3.072 0.175  O3G    H6Y 4  
H6Y PB     PB     P 0 1 N N N 5.621  22.764 1.543  -4.358 -0.259 -0.566 PB     H6Y 5  
H6Y O1B    O1B    O 0 1 N N N 6.123  24.067 1.996  -5.253 0.728  -1.211 O1B    H6Y 6  
H6Y O2B    O2B    O 0 1 N N N 5.355  22.771 0.049  -3.916 -1.368 -1.646 O2B    H6Y 7  
H6Y O3B    O3B    O 0 1 N N N 4.358  22.276 2.375  -5.135 -0.974 0.650  O3B    H6Y 8  
H6Y PA     PA     P 0 1 N N N 8.017  21.037 1.390  -2.111 1.674  -0.558 PA     H6Y 9  
H6Y O1A    O1A    O 0 1 N N N 8.145  19.697 2.030  -1.906 1.496  -2.013 O1A    H6Y 10 
H6Y O2A    O2A    O 0 1 N N N 7.947  20.911 -0.141 -2.818 3.094  -0.285 O2A    H6Y 11 
H6Y O3A    O3A    O 0 1 N N N 6.669  21.649 1.966  -3.051 0.491  -0.001 O3A    H6Y 12 
H6Y "O5'"  "O5'"  O 0 1 N N N 9.127  22.101 1.729  -0.689 1.629  0.195  "O5'"  H6Y 13 
H6Y "C5'"  "C5'"  C 0 1 N N N 10.253 21.774 2.564  0.402  2.485  -0.151 "C5'"  H6Y 14 
H6Y "C4'"  "C4'"  C 0 1 N N R 11.483 21.683 1.699  1.596  2.182  0.756  "C4'"  H6Y 15 
H6Y "O4'"  "O4'"  O 0 1 N N N 12.655 21.614 2.538  2.093  0.861  0.484  "O4'"  H6Y 16 
H6Y "C3'"  "C3'"  C 0 1 N N S 11.563 20.487 0.739  2.740  3.171  0.465  "C3'"  H6Y 17 
H6Y "O3'"  "O3'"  O 0 1 N N N 11.910 20.964 -0.560 3.062  3.923  1.637  "O3'"  H6Y 18 
H6Y "C2'"  "C2'"  C 0 1 N N R 12.674 19.618 1.346  3.929  2.267  0.057  "C2'"  H6Y 19 
H6Y "O2'"  "O2'"  O 0 1 N N N 13.398 18.933 0.336  5.150  2.741  0.629  "O2'"  H6Y 20 
H6Y "C1'"  "C1'"  C 0 1 N N R 13.552 20.695 1.963  3.524  0.903  0.671  "C1'"  H6Y 21 
H6Y N9     N9     N 0 1 N N N 14.521 20.328 2.978  4.170  -0.198 -0.048 N9     H6Y 22 
H6Y C8     C8     C 0 1 N N N 14.275 19.481 4.091  4.015  -0.481 -1.356 C8     H6Y 23 
H6Y O8     O8     O 0 1 N N N 13.235 18.884 4.334  3.311  0.140  -2.129 O8     H6Y 24 
H6Y N7     N7     N 0 1 N N N 15.429 19.459 4.825  4.759  -1.559 -1.676 N7     H6Y 25 
H6Y C5     C5     C 0 1 Y N N 16.365 20.291 4.240  5.419  -1.985 -0.526 C5     H6Y 26 
H6Y C6     C6     C 0 1 Y N N 17.699 20.669 4.466  6.306  -3.021 -0.236 C6     H6Y 27 
H6Y N6     N6     N 0 1 N N N 18.379 20.197 5.508  6.709  -3.906 -1.225 N6     H6Y 28 
H6Y N1     N1     N 0 1 Y N N 18.324 21.506 3.608  6.758  -3.141 1.011  N1     H6Y 29 
H6Y C2     C2     C 0 1 Y N N 17.640 21.982 2.567  6.377  -2.302 1.954  C2     H6Y 30 
H6Y C4     C4     C 0 1 Y N N 15.793 20.853 3.061  5.047  -1.117 0.501  C4     H6Y 31 
H6Y N3     N3     N 0 1 Y N N 16.382 21.711 2.205  5.541  -1.311 1.719  N3     H6Y 32 
H6Y H2G    H2G    H 0 1 N N N 2.795  19.957 0.961  -7.849 -2.058 2.567  H2G    H6Y 33 
H6Y H3G    H3G    H 0 1 N N N 4.581  19.715 4.144  -6.024 -3.694 0.577  H3G    H6Y 34 
H6Y H2B    H2B    H 0 1 N N N 5.567  23.626 -0.307 -3.328 -2.049 -1.292 H2B    H6Y 35 
H6Y H2A    H2A    H 0 1 N N N 7.999  19.995 -0.387 -2.984 3.278  0.650  H2A    H6Y 36 
H6Y "H5'1" "H5'1" H 0 0 N N N 10.391 22.558 3.323  0.683  2.315  -1.190 "H5'1" H6Y 37 
H6Y "H5'2" "H5'2" H 0 0 N N N 10.078 20.809 3.061  0.102  3.525  -0.021 "H5'2" H6Y 38 
H6Y "H4'"  "H4'"  H 0 1 N N N 11.537 22.599 1.092  1.296  2.257  1.801  "H4'"  H6Y 39 
H6Y "H3'"  "H3'"  H 0 1 N N N 10.610 19.938 0.734  2.469  3.839  -0.353 "H3'"  H6Y 40 
H6Y "H1'"  "H1'"  H 0 1 N N N 14.088 21.191 1.141  3.774  0.869  1.731  "H1'"  H6Y 41 
H6Y "HO3'" "HO3'" H 0 0 N N N 11.962 20.232 -1.163 3.777  4.562  1.510  "HO3'" H6Y 42 
H6Y "H2'"  "H2'"  H 0 1 N N N 12.271 18.943 2.115  4.011  2.198  -1.027 "H2'"  H6Y 43 
H6Y "HO2'" "HO2'" H 0 0 N N N 14.078 18.404 0.737  5.398  3.631  0.344  "HO2'" H6Y 44 
H6Y H7     H7     H 0 1 N N N 15.573 18.923 5.657  4.822  -1.967 -2.554 H7     H6Y 45 
H6Y H61N   H61N   H 0 0 N N N 19.310 20.561 5.491  6.374  -3.809 -2.129 H61N   H6Y 46 
H6Y H62N   H62N   H 0 0 N N N 17.927 20.476 6.355  7.327  -4.623 -1.011 H62N   H6Y 47 
H6Y H2     H2     H 0 1 N N N 18.172 22.677 1.934  6.765  -2.431 2.954  H2     H6Y 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H6Y PG    O1G    DOUB N N 1  
H6Y PG    O2G    SING N N 2  
H6Y PG    O3G    SING N N 3  
H6Y PG    O3B    SING N N 4  
H6Y PB    O1B    DOUB N N 5  
H6Y PB    O2B    SING N N 6  
H6Y PB    O3B    SING N N 7  
H6Y PB    O3A    SING N N 8  
H6Y PA    O1A    DOUB N N 9  
H6Y PA    O2A    SING N N 10 
H6Y PA    O3A    SING N N 11 
H6Y PA    "O5'"  SING N N 12 
H6Y "O5'" "C5'"  SING N N 13 
H6Y "C5'" "C4'"  SING N N 14 
H6Y "C4'" "O4'"  SING N N 15 
H6Y "C4'" "C3'"  SING N N 16 
H6Y "O4'" "C1'"  SING N N 17 
H6Y "C3'" "O3'"  SING N N 18 
H6Y "C3'" "C2'"  SING N N 19 
H6Y "C2'" "O2'"  SING N N 20 
H6Y "C2'" "C1'"  SING N N 21 
H6Y "C1'" N9     SING N N 22 
H6Y N9    C8     SING N N 23 
H6Y N9    C4     SING N N 24 
H6Y C8    O8     DOUB N N 25 
H6Y C8    N7     SING N N 26 
H6Y N7    C5     SING N N 27 
H6Y C5    C6     DOUB Y N 28 
H6Y C5    C4     SING Y N 29 
H6Y N3    C4     DOUB Y N 30 
H6Y C6    N6     SING N N 31 
H6Y C6    N1     SING Y N 32 
H6Y N1    C2     DOUB Y N 33 
H6Y C2    N3     SING Y N 34 
H6Y O2G   H2G    SING N N 35 
H6Y O3G   H3G    SING N N 36 
H6Y O2B   H2B    SING N N 37 
H6Y O2A   H2A    SING N N 38 
H6Y "C5'" "H5'1" SING N N 39 
H6Y "C5'" "H5'2" SING N N 40 
H6Y "C4'" "H4'"  SING N N 41 
H6Y "C3'" "H3'"  SING N N 42 
H6Y "C1'" "H1'"  SING N N 43 
H6Y "O3'" "HO3'" SING N N 44 
H6Y "C2'" "H2'"  SING N N 45 
H6Y "O2'" "HO2'" SING N N 46 
H6Y N7    H7     SING N N 47 
H6Y N6    H61N   SING N N 48 
H6Y N6    H62N   SING N N 49 
H6Y C2    H2     SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H6Y InChI            InChI                1.03  
"InChI=1S/C10H16N5O14P3/c11-7-4-8(13-2-12-7)15(10(18)14-4)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,14,18)(H,22,23)(H,24,25)(H2,11,12,13)(H2,19,20,21)/t3-,5-,6-,9-/m1/s1" 
H6Y InChIKey         InChI                1.03  CAIHKAFUTAIAPY-UUOKFMHZSA-N 
H6Y SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2N([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)C(=O)Nc12" 
H6Y SMILES           CACTVS               3.385 "Nc1ncnc2N([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O)C(=O)Nc12" 
H6Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)N(C(=O)N2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N" 
H6Y SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)N(C(=O)N2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
H6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-azanyl-8-oxidanylidene-7H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H6Y "Create component" 2016-01-06 EBI  
H6Y "Initial release"  2016-07-20 RCSB 
# 
