data_G4Y
# 
_chem_comp.id                                    G4Y 
_chem_comp.name                                  "N-[(1S)-6-(5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]imidoformamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        353.420 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G4Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DB4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G4Y N3  N1  N 0 1 Y N N N N N 1.257  12.154 -3.569 -4.576 1.286  -0.614 N3  G4Y 1  
G4Y C4  C1  C 0 1 Y N N N N N -2.867 18.106 -5.292 2.096  -1.144 0.879  C4  G4Y 2  
G4Y N2  N2  N 0 1 Y N N N N N 2.644  14.119 -3.256 -3.255 3.260  0.123  N2  G4Y 3  
G4Y C7  C2  C 0 1 N N N N N N -3.768 18.997 -5.980 3.399  -1.916 0.896  C7  G4Y 4  
G4Y C6  C3  C 0 1 Y N N N N N -0.507 17.608 -5.298 1.210  0.926  0.062  C6  G4Y 5  
G4Y C9  C4  C 0 1 N N S N N N -1.576 19.713 -6.437 3.705  0.169  -0.265 C9  G4Y 6  
G4Y C13 C5  C 0 1 Y N N N N N 0.306  14.182 -4.100 -2.427 1.061  -0.027 C13 G4Y 7  
G4Y C20 C6  C 0 1 Y N N N N N -3.383 14.143 -6.809 -2.117 -3.859 0.167  C20 G4Y 8  
G4Y C21 C7  C 0 1 Y N N N N N -2.130 14.016 -6.216 -2.797 -2.659 0.185  C21 G4Y 9  
G4Y C8  C8  C 0 1 N N N N N N -3.074 19.881 -6.692 4.489  -0.876 0.556  C8  G4Y 10 
G4Y N5  N3  N 0 1 N N N N N N -0.029 22.104 -7.283 5.761  1.304  -1.703 N5  G4Y 11 
G4Y C18 C9  C 0 1 Y N N N N N -4.310 12.634 -5.206 -0.336 -2.842 -1.078 C18 G4Y 12 
G4Y C16 C10 C 0 1 Y N N N N N -1.961 13.209 -5.093 -2.245 -1.538 -0.432 C16 G4Y 13 
G4Y C19 C11 C 0 1 Y N N N N N -4.468 13.453 -6.302 -0.889 -3.951 -0.463 C19 G4Y 14 
G4Y C1  C12 C 0 1 Y N N N N N -0.715 16.494 -4.478 -0.040 0.600  0.587  C1  G4Y 15 
G4Y C2  C13 C 0 1 Y N N N N N -2.013 16.238 -4.027 -0.208 -0.603 1.271  C2  G4Y 16 
G4Y C3  C14 C 0 1 Y N N N N N -3.079 17.018 -4.438 0.857  -1.469 1.406  C3  G4Y 17 
G4Y C5  C15 C 0 1 Y N N N N N -1.563 18.428 -5.707 2.271  0.052  0.206  C5  G4Y 18 
G4Y C10 C16 C 0 1 Y N N N N N 0.415  15.589 -4.135 -1.183 1.527  0.419  C10 G4Y 19 
G4Y N1  N4  N 0 1 Y N N N N N 1.569  16.200 -3.815 -1.054 2.826  0.688  N1  G4Y 20 
G4Y C11 C17 C 0 1 Y N N N N N 2.598  15.445 -3.411 -2.070 3.654  0.539  C11 G4Y 21 
G4Y C12 C18 C 0 1 Y N N N N N 1.494  13.496 -3.591 -3.483 1.983  -0.171 C12 G4Y 22 
G4Y C14 C19 C 0 1 Y N N N N N 0.001  11.907 -4.071 -4.268 -0.038 -0.755 C14 G4Y 23 
G4Y C15 C20 C 0 1 Y N N N N N -0.632 13.105 -4.425 -2.971 -0.245 -0.415 C15 G4Y 24 
G4Y C17 C21 C 0 1 Y N N N N N -3.068 12.512 -4.594 -1.007 -1.637 -1.066 C17 G4Y 25 
G4Y N4  N5  N 0 1 N N N N N N -0.646 19.723 -7.562 4.219  1.515  0.000  N4  G4Y 26 
G4Y C22 C22 C 0 1 N N N N N N 0.038  20.916 -7.873 5.246  2.018  -0.755 C22 G4Y 27 
G4Y H1  H1  H 0 1 N N N N N N 1.896  11.459 -3.240 -5.444 1.676  -0.798 H1  G4Y 28 
G4Y H2  H2  H 0 1 N N N N N N -4.389 19.528 -5.244 3.575  -2.339 1.885  H2  G4Y 29 
G4Y H3  H3  H 0 1 N N N N N N -4.415 18.414 -6.652 3.381  -2.705 0.145  H3  G4Y 30 
G4Y H4  H4  H 0 1 N N N N N N 0.496  17.841 -5.624 1.345  1.857  -0.468 H4  G4Y 31 
G4Y H5  H5  H 0 1 N N N N N N -1.273 20.504 -5.735 3.774  -0.058 -1.329 H5  G4Y 32 
G4Y H6  H6  H 0 1 N N N N N N -3.508 14.784 -7.669 -2.542 -4.727 0.649  H6  G4Y 33 
G4Y H7  H7  H 0 1 N N N N N N -1.284 14.546 -6.629 -3.756 -2.588 0.677  H7  G4Y 34 
G4Y H8  H8  H 0 1 N N N N N N -3.379 20.898 -6.404 4.891  -0.431 1.466  H8  G4Y 35 
G4Y H9  H9  H 0 1 N N N N N N -3.279 19.726 -7.762 5.282  -1.324 -0.042 H9  G4Y 36 
G4Y H10 H10 H 0 1 N N N N N N -0.668 22.105 -6.514 5.421  0.413  -1.878 H10 G4Y 37 
G4Y H11 H11 H 0 1 N N N N N N -5.155 12.084 -4.820 0.624  -2.920 -1.568 H11 G4Y 38 
G4Y H12 H12 H 0 1 N N N N N N -5.438 13.556 -6.765 -0.359 -4.893 -0.475 H12 G4Y 39 
G4Y H13 H13 H 0 1 N N N N N N -2.187 15.418 -3.346 -1.173 -0.863 1.681  H13 G4Y 40 
G4Y H14 H14 H 0 1 N N N N N N -4.078 16.787 -4.099 0.724  -2.406 1.927  H14 G4Y 41 
G4Y H15 H15 H 0 1 N N N N N N 3.509  15.977 -3.180 -1.923 4.699  0.768  H15 G4Y 42 
G4Y H16 H16 H 0 1 N N N N N N -0.437 10.925 -4.178 -4.953 -0.804 -1.087 H16 G4Y 43 
G4Y H17 H17 H 0 1 N N N N N N -2.956 11.876 -3.728 -0.574 -0.771 -1.545 H17 G4Y 44 
G4Y H18 H18 H 0 1 N N N N N N -0.496 18.896 -8.104 3.833  2.051  0.711  H18 G4Y 45 
G4Y H19 H19 H 0 1 N N N N N N 0.714  20.855 -8.713 5.625  3.010  -0.560 H19 G4Y 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G4Y C22 N4  SING N N 1  
G4Y C22 N5  DOUB N N 2  
G4Y N4  C9  SING N N 3  
G4Y C20 C19 DOUB Y N 4  
G4Y C20 C21 SING Y N 5  
G4Y C8  C9  SING N N 6  
G4Y C8  C7  SING N N 7  
G4Y C9  C5  SING N N 8  
G4Y C19 C18 SING Y N 9  
G4Y C21 C16 DOUB Y N 10 
G4Y C7  C4  SING N N 11 
G4Y C5  C6  DOUB Y N 12 
G4Y C5  C4  SING Y N 13 
G4Y C6  C1  SING Y N 14 
G4Y C4  C3  DOUB Y N 15 
G4Y C18 C17 DOUB Y N 16 
G4Y C16 C17 SING Y N 17 
G4Y C16 C15 SING N N 18 
G4Y C1  C10 SING N N 19 
G4Y C1  C2  DOUB Y N 20 
G4Y C3  C2  SING Y N 21 
G4Y C15 C13 SING Y N 22 
G4Y C15 C14 DOUB Y N 23 
G4Y C10 C13 DOUB Y N 24 
G4Y C10 N1  SING Y N 25 
G4Y C13 C12 SING Y N 26 
G4Y C14 N3  SING Y N 27 
G4Y N1  C11 DOUB Y N 28 
G4Y C12 N3  SING Y N 29 
G4Y C12 N2  DOUB Y N 30 
G4Y C11 N2  SING Y N 31 
G4Y N3  H1  SING N N 32 
G4Y C7  H2  SING N N 33 
G4Y C7  H3  SING N N 34 
G4Y C6  H4  SING N N 35 
G4Y C9  H5  SING N N 36 
G4Y C20 H6  SING N N 37 
G4Y C21 H7  SING N N 38 
G4Y C8  H8  SING N N 39 
G4Y C8  H9  SING N N 40 
G4Y N5  H10 SING N N 41 
G4Y C18 H11 SING N N 42 
G4Y C19 H12 SING N N 43 
G4Y C2  H13 SING N N 44 
G4Y C3  H14 SING N N 45 
G4Y C11 H15 SING N N 46 
G4Y C14 H16 SING N N 47 
G4Y C17 H17 SING N N 48 
G4Y N4  H18 SING N N 49 
G4Y C22 H19 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G4Y SMILES           ACDLabs              12.01 "n3c1ncnc(c1c(c2ccccc2)c3)c4cc5c(cc4)CCC5NC=[N@H]"                                                                                                                 
G4Y InChI            InChI                1.03  "InChI=1S/C22H19N5/c23-12-25-19-9-8-15-6-7-16(10-17(15)19)21-20-18(14-4-2-1-3-5-14)11-24-22(20)27-13-26-21/h1-7,10-13,19H,8-9H2,(H2,23,25)(H,24,26,27)/t19-/m0/s1" 
G4Y InChIKey         InChI                1.03  HLJVDQSXUUSDJP-IBGZPJMESA-N                                                                                                                                        
G4Y SMILES_CANONICAL CACTVS               3.385 "N=CN[C@H]1CCc2ccc(cc12)c3ncnc4[nH]cc(c5ccccc5)c34"                                                                                                                
G4Y SMILES           CACTVS               3.385 "N=CN[CH]1CCc2ccc(cc12)c3ncnc4[nH]cc(c5ccccc5)c34"                                                                                                                 
G4Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C/N[C@H]1CCc2c1cc(cc2)c3c4c(c[nH]c4ncn3)c5ccccc5"                                                                                                           
G4Y SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2c[nH]c3c2c(ncn3)c4ccc5c(c4)C(CC5)NC=N"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G4Y "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1S)-6-(5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]imidoformamide"              
G4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(1~{S})-6-(5-phenyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-2,3-dihydro-1~{H}-inden-1-yl]methanimidamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G4Y "Create component" 2018-05-04 RCSB 
G4Y "Initial release"  2018-11-28 RCSB 
G4Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            G4Y 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
