data_G3Y
# 
_chem_comp.id                                    G3Y 
_chem_comp.name                                  "(1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H15 N O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-16 
_chem_comp.pdbx_modified_date                    2024-06-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        253.317 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G3Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8S45 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G3Y C4  C1  C 0 1 Y N N N N N -17.727 -26.139 -33.750 3.468  0.914  0.679  C4  G3Y 1  
G3Y C5  C2  C 0 1 Y N N N N N -18.484 -27.236 -34.127 4.644  0.282  0.328  C5  G3Y 2  
G3Y C6  C3  C 0 1 N N R N N N -15.951 -23.783 -33.580 -0.494 0.343  -0.329 C6  G3Y 3  
G3Y C7  C4  C 0 1 N N S N N N -14.677 -24.582 -33.282 -1.867 0.998  -0.142 C7  G3Y 4  
G3Y C8  C5  C 0 1 N N S N N N -13.644 -23.831 -32.444 -2.946 0.095  -0.748 C8  G3Y 5  
G3Y C9  C6  C 0 1 N N R N N N -13.611 -22.339 -32.784 -2.779 -1.321 -0.172 C9  G3Y 6  
G3Y C10 C7  C 0 1 N N N N N N -14.619 -21.595 -31.964 -2.559 -1.186 1.353  C10 G3Y 7  
G3Y C11 C8  C 0 1 N N S N N N -15.538 -22.295 -33.928 -0.559 -1.101 0.194  C11 G3Y 8  
G3Y O2  O1  O 0 1 N N N N N N -14.077 -24.918 -34.529 -1.882 2.267  -0.799 O2  G3Y 9  
G3Y N   N1  N 0 1 N N N N N N -13.961 -24.017 -30.989 -4.276 0.614  -0.401 N   G3Y 10 
G3Y O1  O2  O 0 1 N N N N N N -14.139 -22.129 -34.121 -1.499 -1.821 -0.633 O1  G3Y 11 
G3Y O   O3  O 0 1 N N N N N N -15.834 -21.695 -32.704 -1.133 -1.076 1.514  O   G3Y 12 
G3Y S   S1  S 0 1 N N N N N N -17.194 -23.919 -32.233 0.755  1.271  0.603  S   G3Y 13 
G3Y C3  C9  C 0 1 Y N N N N N -18.084 -25.397 -32.632 2.260  0.472  0.153  C3  G3Y 14 
G3Y C2  C10 C 0 1 Y N N N N N -19.191 -25.782 -31.886 2.242  -0.601 -0.730 C2  G3Y 15 
G3Y C1  C11 C 0 1 Y N N N N N -19.945 -26.877 -32.270 3.423  -1.224 -1.081 C1  G3Y 16 
G3Y C   C12 C 0 1 Y N N N N N -19.596 -27.601 -33.393 4.622  -0.789 -0.547 C   G3Y 17 
G3Y H1  H1  H 0 1 N N N N N N -16.857 -25.860 -34.327 3.486  1.747  1.366  H1  G3Y 18 
G3Y H2  H2  H 0 1 N N N N N N -18.204 -27.809 -34.999 5.583  0.625  0.737  H2  G3Y 19 
G3Y H3  H3  H 0 1 N N N N N N -16.435 -24.216 -34.468 -0.232 0.339  -1.387 H3  G3Y 20 
G3Y H4  H4  H 0 1 N N N N N N -14.961 -25.499 -32.745 -2.062 1.136  0.922  H4  G3Y 21 
G3Y H5  H5  H 0 1 N N N N N N -12.651 -24.257 -32.649 -2.835 0.068  -1.832 H5  G3Y 22 
G3Y H6  H6  H 0 1 N N N N N N -12.600 -21.924 -32.662 -3.614 -1.975 -0.420 H6  G3Y 23 
G3Y H7  H7  H 0 1 N N N N N N -14.730 -22.058 -30.972 -3.052 -0.289 1.730  H7  G3Y 24 
G3Y H8  H8  H 0 1 N N N N N N -14.322 -20.542 -31.846 -2.933 -2.069 1.870  H8  G3Y 25 
G3Y H9  H9  H 0 1 N N N N N N -16.139 -21.910 -34.765 0.427  -1.566 0.197  H9  G3Y 26 
G3Y H10 H10 H 0 1 N N N N N N -13.282 -25.415 -34.375 -1.221 2.890  -0.467 H10 G3Y 27 
G3Y H11 H11 H 0 1 N N N N N N -13.288 -23.527 -30.435 -4.402 1.550  -0.756 H11 G3Y 28 
G3Y H12 H12 H 0 1 N N N N N N -14.874 -23.657 -30.798 -5.003 -0.001 -0.735 H12 G3Y 29 
G3Y H14 H14 H 0 1 N N N N N N -19.464 -25.224 -31.002 1.305  -0.947 -1.141 H14 G3Y 30 
G3Y H15 H15 H 0 1 N N N N N N -20.809 -27.166 -31.690 3.409  -2.058 -1.767 H15 G3Y 31 
G3Y H16 H16 H 0 1 N N N N N N -20.191 -28.450 -33.697 5.544  -1.281 -0.820 H16 G3Y 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G3Y O2  C7  SING N N 1  
G3Y C5  C4  DOUB Y N 2  
G3Y C5  C   SING Y N 3  
G3Y O1  C11 SING N N 4  
G3Y O1  C9  SING N N 5  
G3Y C11 C6  SING N N 6  
G3Y C11 O   SING N N 7  
G3Y C4  C3  SING Y N 8  
G3Y C6  C7  SING N N 9  
G3Y C6  S   SING N N 10 
G3Y C   C1  DOUB Y N 11 
G3Y C7  C8  SING N N 12 
G3Y C9  C8  SING N N 13 
G3Y C9  C10 SING N N 14 
G3Y O   C10 SING N N 15 
G3Y C3  S   SING N N 16 
G3Y C3  C2  DOUB Y N 17 
G3Y C8  N   SING N N 18 
G3Y C1  C2  SING Y N 19 
G3Y C4  H1  SING N N 20 
G3Y C5  H2  SING N N 21 
G3Y C6  H3  SING N N 22 
G3Y C7  H4  SING N N 23 
G3Y C8  H5  SING N N 24 
G3Y C9  H6  SING N N 25 
G3Y C10 H7  SING N N 26 
G3Y C10 H8  SING N N 27 
G3Y C11 H9  SING N N 28 
G3Y O2  H10 SING N N 29 
G3Y N   H11 SING N N 30 
G3Y N   H12 SING N N 31 
G3Y C2  H14 SING N N 32 
G3Y C1  H15 SING N N 33 
G3Y C   H16 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G3Y InChI            InChI                1.06  "InChI=1S/C12H15NO3S/c13-9-8-6-15-12(16-8)11(10(9)14)17-7-4-2-1-3-5-7/h1-5,8-12,14H,6,13H2/t8-,9+,10-,11+,12-/m0/s1" 
G3Y InChIKey         InChI                1.06  OFCUYBHPAYPQJR-MJDLHHQISA-N                                                                                          
G3Y SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1[C@@H]2CO[C@@H](O2)[C@H](Sc3ccccc3)[C@H]1O"                                                                 
G3Y SMILES           CACTVS               3.385 "N[CH]1[CH]2CO[CH](O2)[CH](Sc3ccccc3)[CH]1O"                                                                         
G3Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S[C@@H]2[C@H]([C@@H]([C@@H]3CO[C@H]2O3)N)O"                                                               
G3Y SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)SC2C(C(C3COC2O3)N)O"                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           G3Y 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G3Y "Create component" 2021-12-16 RCSB 
G3Y "Initial release"  2024-06-19 RCSB 
# 
