data_EBY
# 
_chem_comp.id                                    EBY 
_chem_comp.name                                  "N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-5-methyl-L-tryptophanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 Cl N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-12-19 
_chem_comp.pdbx_modified_date                    2018-10-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        464.002 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EBY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BVL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EBY N1  N1  N  0 1 N N N 42.835 29.487 21.444 4.416  2.081  0.392  N1  EBY 1  
EBY N3  N2  N  0 1 N N N 36.061 29.108 20.576 -2.378 0.639  -0.697 N3  EBY 2  
EBY C4  C1  C  0 1 Y N N 38.121 32.770 19.868 6.589  -1.393 -1.122 C4  EBY 3  
EBY C5  C2  C  0 1 Y N N 39.782 31.839 18.614 4.485  -1.222 -1.893 C5  EBY 4  
EBY C6  C3  C  0 1 Y N N 40.225 31.821 19.929 4.462  -0.656 -0.676 C6  EBY 5  
EBY C7  C4  C  0 1 N N N 41.529 31.351 20.452 3.265  -0.046 0.007  C7  EBY 6  
EBY C8  C5  C  0 1 N N S 41.482 29.985 21.183 3.247  1.463  -0.248 C8  EBY 7  
EBY C10 C6  C  0 1 N N N 38.564 27.577 20.274 -0.399 2.536  0.212  C10 EBY 8  
EBY C13 C7  C  0 1 N N N 35.383 30.362 21.062 -2.884 -0.556 -1.385 C13 EBY 9  
EBY C15 C8  C  0 1 Y N N 32.986 29.713 21.755 -3.332 -2.463 0.240  C15 EBY 10 
EBY C17 C9  C  0 1 Y N N 32.858 30.031 25.392 -6.753 -2.143 1.384  C17 EBY 11 
EBY C20 C10 C  0 1 Y N N 35.447 30.588 24.294 -6.051 -0.138 -0.419 C20 EBY 12 
EBY C21 C11 C  0 1 Y N N 34.397 30.240 23.451 -5.116 -1.111 -0.061 C21 EBY 13 
EBY C22 C12 C  0 1 N N N 36.649 28.343 21.740 -1.759 1.572  -1.647 C22 EBY 14 
EBY C24 C13 C  0 1 Y N N 39.177 32.405 20.753 5.821  -0.746 -0.136 C24 EBY 15 
EBY N   N3  N  0 1 Y N N 38.504 32.416 18.562 5.748  -1.665 -2.178 N   EBY 16 
EBY C   C14 C  0 1 N N N 37.664 33.521 24.067 8.393  -0.145 2.557  C   EBY 17 
EBY O   O1  O  0 1 N N N 41.043 28.570 19.229 2.017  2.615  1.404  O   EBY 18 
EBY C1  C15 C  0 1 Y N N 37.861 33.256 22.600 7.748  -0.580 1.267  C1  EBY 19 
EBY C11 C16 C  0 1 N N N 37.867 28.239 19.076 -1.050 1.526  1.161  C11 EBY 20 
EBY C12 C17 C  0 1 N N N 37.094 29.483 19.539 -1.443 0.273  0.374  C12 EBY 21 
EBY C14 C18 C  0 1 Y N N 34.290 30.090 22.032 -3.722 -1.368 -0.432 C14 EBY 22 
EBY C16 C19 C  0 1 Y N N 33.110 29.957 24.009 -5.469 -2.124 0.849  C16 EBY 23 
EBY C18 C20 C  0 1 Y N N 33.906 30.385 26.218 -7.661 -1.173 1.019  C18 EBY 24 
EBY C19 C21 C  0 1 Y N N 35.173 30.643 25.641 -7.308 -0.176 0.119  C19 EBY 25 
EBY C2  C22 C  0 1 Y N N 36.836 33.615 21.697 8.511  -1.216 0.297  C2  EBY 26 
EBY C23 C23 C  0 1 N N N 37.460 27.135 21.250 -1.376 2.863  -0.921 C23 EBY 27 
EBY C25 C24 C  0 1 Y N N 39.037 32.653 22.138 6.418  -0.343 1.060  C25 EBY 28 
EBY C3  C25 C  0 1 Y N N 36.947 33.382 20.337 7.941  -1.623 -0.890 C3  EBY 29 
EBY C9  C26 C  0 1 N N N 40.668 28.971 20.337 1.987  2.055  0.329  C9  EBY 30 
EBY N2  N4  N  0 1 N N N 39.480 28.531 20.925 0.826  1.960  -0.349 N2  EBY 31 
EBY N4  N5  N  0 1 Y N N 32.257 29.633 22.957 -4.363 -2.929 1.010  N4  EBY 32 
EBY CL  CL1 CL 0 0 N N N 36.483 31.018 26.710 -8.472 1.033  -0.327 CL  EBY 33 
EBY H1  H1  H  0 1 N N N 43.338 30.157 21.990 4.410  1.921  1.388  H1  EBY 34 
EBY H2  H2  H  0 1 N N N 42.781 28.623 21.944 5.273  1.748  -0.023 H2  EBY 35 
EBY H5  H5  H  0 1 N N N 40.334 31.467 17.764 3.634  -1.312 -2.551 H5  EBY 36 
EBY H6  H6  H  0 1 N N N 42.225 31.262 19.605 2.353  -0.492 -0.391 H6  EBY 37 
EBY H7  H7  H  0 1 N N N 41.906 32.105 21.159 3.323  -0.233 1.079  H7  EBY 38 
EBY H8  H8  H  0 1 N N N 40.959 30.128 22.140 3.278  1.651  -1.321 H8  EBY 39 
EBY H9  H9  H  0 1 N N N 39.120 26.693 19.929 -0.156 3.447  0.758  H9  EBY 40 
EBY H10 H10 H  0 1 N N N 36.134 31.001 21.550 -3.493 -0.254 -2.237 H10 EBY 41 
EBY H11 H11 H  0 1 N N N 34.960 30.890 20.195 -2.044 -1.157 -1.733 H11 EBY 42 
EBY H12 H12 H  0 1 N N N 32.590 29.512 20.770 -2.352 -2.913 0.177  H12 EBY 43 
EBY H13 H13 H  0 1 N N N 31.878 29.818 25.793 -7.037 -2.915 2.083  H13 EBY 44 
EBY H14 H14 H  0 1 N N N 36.432 30.805 23.909 -5.784 0.640  -1.117 H14 EBY 45 
EBY H15 H15 H  0 1 N N N 37.309 29.011 22.313 -0.865 1.116  -2.073 H15 EBY 46 
EBY H16 H16 H  0 1 N N N 35.833 27.990 22.388 -2.465 1.800  -2.445 H16 EBY 47 
EBY H17 H17 H  0 1 N N N 37.958 32.552 17.736 6.011  -2.107 -3.000 H17 EBY 48 
EBY H18 H18 H  0 1 N N N 37.184 32.649 24.536 8.775  0.871  2.449  H18 EBY 49 
EBY H19 H19 H  0 1 N N N 38.640 33.702 24.541 7.655  -0.171 3.359  H19 EBY 50 
EBY H20 H20 H  0 1 N N N 37.024 34.406 24.197 9.215  -0.818 2.798  H20 EBY 51 
EBY H21 H21 H  0 1 N N N 37.166 27.523 18.621 -0.344 1.256  1.946  H21 EBY 52 
EBY H22 H22 H  0 1 N N N 38.622 28.535 18.333 -1.941 1.969  1.608  H22 EBY 53 
EBY H23 H23 H  0 1 N N N 37.799 30.206 19.975 -1.920 -0.442 1.045  H23 EBY 54 
EBY H24 H24 H  0 1 N N N 36.590 29.939 18.674 -0.550 -0.177 -0.061 H24 EBY 55 
EBY H25 H25 H  0 1 N N N 33.762 30.464 27.285 -8.657 -1.190 1.436  H25 EBY 56 
EBY H26 H26 H  0 1 N N N 35.941 34.084 22.078 9.561  -1.395 0.475  H26 EBY 57 
EBY H27 H27 H  0 1 N N N 36.786 26.432 20.738 -2.271 3.327  -0.507 H27 EBY 58 
EBY H28 H28 H  0 1 N N N 37.922 26.636 22.115 -0.902 3.549  -1.623 H28 EBY 59 
EBY H29 H29 H  0 1 N N N 39.823 32.382 22.827 5.832  0.154  1.818  H29 EBY 60 
EBY H30 H30 H  0 1 N N N 36.155 33.662 19.658 8.542  -2.119 -1.638 H30 EBY 61 
EBY H31 H31 H  0 1 N N N 39.239 28.880 21.831 0.802  1.512  -1.209 H31 EBY 62 
EBY H32 H32 H  0 1 N N N 31.292 29.386 23.041 -4.321 -3.710 1.584  H32 EBY 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EBY N   C5  SING Y N 1  
EBY N   C4  SING Y N 2  
EBY C5  C6  DOUB Y N 3  
EBY C11 C12 SING N N 4  
EBY C11 C10 SING N N 5  
EBY O   C9  DOUB N N 6  
EBY C12 N3  SING N N 7  
EBY C4  C3  DOUB Y N 8  
EBY C4  C24 SING Y N 9  
EBY C6  C7  SING N N 10 
EBY C6  C24 SING Y N 11 
EBY C10 N2  SING N N 12 
EBY C10 C23 SING N N 13 
EBY C9  N2  SING N N 14 
EBY C9  C8  SING N N 15 
EBY C3  C2  SING Y N 16 
EBY C7  C8  SING N N 17 
EBY N3  C13 SING N N 18 
EBY N3  C22 SING N N 19 
EBY C24 C25 DOUB Y N 20 
EBY C13 C14 SING N N 21 
EBY C8  N1  SING N N 22 
EBY C23 C22 SING N N 23 
EBY C2  C1  DOUB Y N 24 
EBY C15 C14 DOUB Y N 25 
EBY C15 N4  SING Y N 26 
EBY C14 C21 SING Y N 27 
EBY C25 C1  SING Y N 28 
EBY C1  C   SING N N 29 
EBY N4  C16 SING Y N 30 
EBY C21 C16 DOUB Y N 31 
EBY C21 C20 SING Y N 32 
EBY C16 C17 SING Y N 33 
EBY C20 C19 DOUB Y N 34 
EBY C17 C18 DOUB Y N 35 
EBY C19 C18 SING Y N 36 
EBY C19 CL  SING N N 37 
EBY N1  H1  SING N N 38 
EBY N1  H2  SING N N 39 
EBY C5  H5  SING N N 40 
EBY C7  H6  SING N N 41 
EBY C7  H7  SING N N 42 
EBY C8  H8  SING N N 43 
EBY C10 H9  SING N N 44 
EBY C13 H10 SING N N 45 
EBY C13 H11 SING N N 46 
EBY C15 H12 SING N N 47 
EBY C17 H13 SING N N 48 
EBY C20 H14 SING N N 49 
EBY C22 H15 SING N N 50 
EBY C22 H16 SING N N 51 
EBY N   H17 SING N N 52 
EBY C   H18 SING N N 53 
EBY C   H19 SING N N 54 
EBY C   H20 SING N N 55 
EBY C11 H21 SING N N 56 
EBY C11 H22 SING N N 57 
EBY C12 H23 SING N N 58 
EBY C12 H24 SING N N 59 
EBY C18 H25 SING N N 60 
EBY C2  H26 SING N N 61 
EBY C23 H27 SING N N 62 
EBY C23 H28 SING N N 63 
EBY C25 H29 SING N N 64 
EBY C3  H30 SING N N 65 
EBY N2  H31 SING N N 66 
EBY N4  H32 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EBY SMILES           ACDLabs              12.01 "NC(Cc2cnc1ccc(C)cc12)C(=O)NC5CCN(Cc4cnc3ccc(cc34)Cl)CC5"                                                                                                                                           
EBY InChI            InChI                1.03  "InChI=1S/C26H30ClN5O/c1-16-2-4-24-21(10-16)17(13-29-24)11-23(28)26(33)31-20-6-8-32(9-7-20)15-18-14-30-25-5-3-19(27)12-22(18)25/h2-5,10,12-14,20,23,29-30H,6-9,11,15,28H2,1H3,(H,31,33)/t23-/m0/s1" 
EBY InChIKey         InChI                1.03  ORZWUMKDZDLNTJ-QHCPKHFHSA-N                                                                                                                                                                         
EBY SMILES_CANONICAL CACTVS               3.385 "Cc1ccc2[nH]cc(C[C@H](N)C(=O)NC3CCN(CC3)Cc4c[nH]c5ccc(Cl)cc45)c2c1"                                                                                                                                 
EBY SMILES           CACTVS               3.385 "Cc1ccc2[nH]cc(C[CH](N)C(=O)NC3CCN(CC3)Cc4c[nH]c5ccc(Cl)cc45)c2c1"                                                                                                                                  
EBY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)NC3CCN(CC3)Cc4c[nH]c5c4cc(cc5)Cl)N"                                                                                                                              
EBY SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc2c(c1)c(c[nH]2)CC(C(=O)NC3CCN(CC3)Cc4c[nH]c5c4cc(cc5)Cl)N"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EBY "SYSTEMATIC NAME" ACDLabs              12.01 "N-{1-[(5-chloro-1H-indol-3-yl)methyl]piperidin-4-yl}-5-methyl-L-tryptophanamide"                                         
EBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-~{N}-[1-[(5-chloranyl-1~{H}-indol-3-yl)methyl]piperidin-4-yl]-3-(5-methyl-1~{H}-indol-3-yl)propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EBY "Create component" 2017-12-19 RCSB 
EBY "Initial release"  2018-10-24 RCSB 
# 
