data_DKY
# 
_chem_comp.id                                    DKY 
_chem_comp.name                                  "1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)-4-[(phenylcarbonyl)amino]pyrimidin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 F N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-12 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        379.340 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DKY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3L7A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DKY C1  C1  C 0 1 N N R 33.505 23.012 27.813 -2.422 0.267  0.795  C1  DKY 1  
DKY N1  N1  N 0 1 N N N 34.398 23.619 28.829 -0.958 0.258  0.837  N1  DKY 2  
DKY C2  C2  C 0 1 N N S 33.908 23.172 26.334 -2.898 1.375  -0.149 C2  DKY 3  
DKY N2  N2  N 0 1 N N N 34.588 24.695 30.950 1.074  -0.061 -0.262 N2  DKY 4  
DKY O2  O2  O 0 1 N N N 34.005 24.564 25.992 -2.476 2.644  0.353  O2  DKY 5  
DKY C3  C3  C 0 1 N N S 32.900 22.448 25.412 -4.427 1.339  -0.234 C3  DKY 6  
DKY F3  F3  F 0 1 N N N 33.389 22.389 24.118 -4.867 2.302  -1.150 F3  DKY 7  
DKY N3  N3  N 0 1 N N N 36.604 25.324 31.853 3.127  0.201  0.844  N3  DKY 8  
DKY C4  C4  C 0 1 N N R 32.558 21.027 25.922 -4.870 -0.051 -0.700 C4  DKY 9  
DKY O4  O4  O 0 1 N N N 31.381 20.543 25.273 -6.298 -0.118 -0.713 O4  DKY 10 
DKY C5  C5  C 0 1 N N R 32.366 20.955 27.462 -4.318 -1.104 0.265  C5  DKY 11 
DKY O5  O5  O 0 1 N N N 33.462 21.593 28.144 -2.894 -0.996 0.321  O5  DKY 12 
DKY C6  C6  C 0 1 N N N 32.318 19.500 27.933 -4.705 -2.500 -0.226 C6  DKY 13 
DKY O6  O6  O 0 1 N N N 33.438 18.802 27.363 -4.291 -3.474 0.733  O6  DKY 14 
DKY C7  C7  C 0 1 N N N 35.799 23.664 28.680 -0.311 0.554  1.998  C7  DKY 15 
DKY C8  C8  C 0 1 N N N 36.568 24.239 29.695 1.043  0.541  2.024  C8  DKY 16 
DKY C9  C9  C 0 1 N N N 35.928 24.769 30.831 1.746  0.221  0.846  C9  DKY 17 
DKY C10 C10 C 0 1 N N N 33.812 24.143 29.998 -0.258 -0.050 -0.271 C10 DKY 18 
DKY O10 O10 O 0 1 N N N 32.589 24.113 30.151 -0.853 -0.317 -1.301 O10 DKY 19 
DKY C11 C11 C 0 1 N N N 37.859 25.797 31.785 3.795  -0.106 -0.285 C11 DKY 20 
DKY O11 O11 O 0 1 N N N 38.548 25.801 30.762 3.183  -0.366 -1.302 O11 DKY 21 
DKY C12 C12 C 0 1 Y N N 38.421 26.366 33.104 5.273  -0.128 -0.287 C12 DKY 22 
DKY C13 C13 C 0 1 Y N N 39.785 26.667 33.204 5.968  -0.446 -1.455 C13 DKY 23 
DKY C14 C14 C 0 1 Y N N 40.319 27.173 34.392 7.348  -0.464 -1.449 C14 DKY 24 
DKY C15 C15 C 0 1 Y N N 39.477 27.378 35.488 8.042  -0.168 -0.289 C15 DKY 25 
DKY C16 C16 C 0 1 Y N N 38.119 27.076 35.397 7.359  0.147  0.872  C16 DKY 26 
DKY C17 C17 C 0 1 Y N N 37.593 26.570 34.207 5.980  0.175  0.879  C17 DKY 27 
DKY H1  H1  H 0 1 N N N 32.543 23.543 27.868 -2.813 0.449  1.796  H1  DKY 28 
DKY H2  H2  H 0 1 N N N 34.895 22.709 26.188 -2.475 1.216  -1.140 H2  DKY 29 
DKY HO2 HO2 H 0 1 N N N 34.254 24.650 25.079 -2.744 3.393  -0.197 HO2 DKY 30 
DKY H3  H3  H 0 1 N N N 31.968 23.033 25.422 -4.852 1.548  0.748  H3  DKY 31 
DKY HN3 HN3 H 0 1 N N N 36.135 25.390 32.734 3.616  0.408  1.656  HN3 DKY 32 
DKY H4  H4  H 0 1 N N N 33.422 20.393 25.675 -4.486 -0.239 -1.702 H4  DKY 33 
DKY HO4 HO4 H 0 1 N N N 31.179 19.671 25.592 -6.716 0.525  -1.301 HO4 DKY 34 
DKY H5  H5  H 0 1 N N N 31.420 21.466 27.694 -4.734 -0.939 1.259  H5  DKY 35 
DKY H6  H6  H 0 1 N N N 32.373 19.461 29.031 -5.786 -2.553 -0.355 H6  DKY 36 
DKY H6A H6A H 0 1 N N N 31.379 19.032 27.603 -4.216 -2.698 -1.180 H6A DKY 37 
DKY HO6 HO6 H 0 1 N N N 33.424 17.895 27.646 -4.504 -4.385 0.487  HO6 DKY 38 
DKY H7  H7  H 0 1 N N N 36.270 23.261 27.796 -0.872 0.797  2.889  H7  DKY 39 
DKY H8  H8  H 0 1 N N N 37.644 24.276 29.609 1.577  0.774  2.934  H8  DKY 40 
DKY H13 H13 H 0 1 N N N 40.431 26.506 32.354 5.427  -0.677 -2.360 H13 DKY 41 
DKY H14 H14 H 0 1 N N N 41.372 27.403 34.462 7.887  -0.710 -2.352 H14 DKY 42 
DKY H15 H15 H 0 1 N N N 39.880 27.772 36.409 9.122  -0.184 -0.291 H15 DKY 43 
DKY H16 H16 H 0 1 N N N 37.473 27.234 36.248 7.907  0.377  1.774  H16 DKY 44 
DKY H17 H17 H 0 1 N N N 36.541 26.336 34.141 5.448  0.426  1.784  H17 DKY 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DKY C2  C1  SING N N 1  
DKY C1  O5  SING N N 2  
DKY C1  N1  SING N N 3  
DKY C1  H1  SING N N 4  
DKY C7  N1  SING N N 5  
DKY N1  C10 SING N N 6  
DKY C3  C2  SING N N 7  
DKY O2  C2  SING N N 8  
DKY C2  H2  SING N N 9  
DKY C10 N2  SING N N 10 
DKY C9  N2  DOUB N N 11 
DKY O2  HO2 SING N N 12 
DKY F3  C3  SING N N 13 
DKY C3  C4  SING N N 14 
DKY C3  H3  SING N N 15 
DKY C9  N3  SING N N 16 
DKY C11 N3  SING N N 17 
DKY N3  HN3 SING N N 18 
DKY O4  C4  SING N N 19 
DKY C4  C5  SING N N 20 
DKY C4  H4  SING N N 21 
DKY O4  HO4 SING N N 22 
DKY C5  C6  SING N N 23 
DKY C5  O5  SING N N 24 
DKY C5  H5  SING N N 25 
DKY O6  C6  SING N N 26 
DKY C6  H6  SING N N 27 
DKY C6  H6A SING N N 28 
DKY O6  HO6 SING N N 29 
DKY C7  C8  DOUB N N 30 
DKY C7  H7  SING N N 31 
DKY C8  C9  SING N N 32 
DKY C8  H8  SING N N 33 
DKY C10 O10 DOUB N N 34 
DKY O11 C11 DOUB N N 35 
DKY C11 C12 SING N N 36 
DKY C12 C13 DOUB Y N 37 
DKY C12 C17 SING Y N 38 
DKY C13 C14 SING Y N 39 
DKY C13 H13 SING N N 40 
DKY C14 C15 DOUB Y N 41 
DKY C14 H14 SING N N 42 
DKY C16 C15 SING Y N 43 
DKY C15 H15 SING N N 44 
DKY C17 C16 DOUB Y N 45 
DKY C16 H16 SING N N 46 
DKY C17 H17 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DKY SMILES_CANONICAL CACTVS               3.352 "OC[C@H]1O[C@H]([C@H](O)[C@@H](F)[C@@H]1O)N2C=CC(=NC2=O)NC(=O)c3ccccc3"                                                                                                        
DKY SMILES           CACTVS               3.352 "OC[CH]1O[CH]([CH](O)[CH](F)[CH]1O)N2C=CC(=NC2=O)NC(=O)c3ccccc3"                                                                                                               
DKY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)F)O"                                                                                                  
DKY SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)C3C(C(C(C(O3)CO)O)F)O"                                                                                                                        
DKY InChI            InChI                1.03  "InChI=1S/C17H18FN3O6/c18-12-13(23)10(8-22)27-16(14(12)24)21-7-6-11(20-17(21)26)19-15(25)9-4-2-1-3-5-9/h1-7,10,12-14,16,22-24H,8H2,(H,19,20,25,26)/t10-,12+,13-,14-,16-/m1/s1" 
DKY InChIKey         InChI                1.03  PUCZITRLESUWFB-PBEGBBSFSA-N                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DKY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[1-[(2R,3S,4S,5R,6R)-4-fluoro-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]-2-oxo-pyrimidin-4-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DKY "Create component"     2010-01-12 RCSB 
DKY "Modify aromatic_flag" 2011-06-04 RCSB 
DKY "Modify descriptor"    2011-06-04 RCSB 
# 
