data_C8Y
# 
_chem_comp.id                                    C8Y 
_chem_comp.name                                  "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H11 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "open form - WCK 4234" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        249.244 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B1H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8Y OAE O1  O 0 1 N N N N N N 9.174  -2.963 1.109  3.560  -1.209 -0.526 OAE C8Y 1  
C8Y SAP S1  S 0 1 N N N N N N 9.300  -1.679 0.504  3.299  -0.064 0.273  SAP C8Y 2  
C8Y OAC O2  O 0 1 N N N N N N 8.201  -1.432 -0.316 3.710  0.048  1.629  OAC C8Y 3  
C8Y OAD O3  O 0 1 N N N N N N 9.247  -0.549 1.452  3.912  1.120  -0.461 OAD C8Y 4  
C8Y OAL O4  O 0 1 N N N N N N 10.684 -1.643 -0.165 1.790  0.133  0.264  OAL C8Y 5  
C8Y NAK N1  N 0 1 N N N N N N 10.927 -2.605 -1.204 1.162  -0.144 -1.028 NAK C8Y 6  
C8Y CAN C1  C 0 1 N N R N N N 11.527 -2.069 -2.476 -0.290 0.066  -0.964 CAN C8Y 7  
C8Y CAI C2  C 0 1 N N N N N N 12.713 -1.108 -2.214 -0.580 1.518  -0.579 CAI C8Y 8  
C8Y CAH C3  C 0 1 N N N N N N 12.410 0.416  -2.037 -2.093 1.747  -0.544 CAH C8Y 9  
C8Y CAM C4  C 0 1 N N S N N N 11.476 0.894  -3.102 -2.718 0.832  0.515  CAM C8Y 10 
C8Y CAF C5  C 0 1 N N N N N N 12.131 0.865  -4.400 -4.185 0.951  0.465  CAF C8Y 11 
C8Y NAA N2  N 0 1 N N N N N N 12.630 0.839  -5.398 -5.316 1.043  0.427  NAA C8Y 12 
C8Y NAO N3  N 0 1 N N N N N N 10.335 -0.026 -3.159 -2.324 -0.555 0.235  NAO C8Y 13 
C8Y CAG C6  C 0 1 N N N N N N 9.090  0.475  -2.977 -3.254 -1.522 0.112  CAG C8Y 14 
C8Y OAB O5  O 0 1 N N N N N N 8.800  1.459  -2.313 -2.924 -2.644 -0.209 OAB C8Y 15 
C8Y CAJ C7  C 0 1 N N N N N N 10.539 -1.474 -3.401 -0.895 -0.868 0.090  CAJ C8Y 16 
C8Y H1  H1  H 0 1 N N N N N N 10.053 -3.032 -1.435 1.379  -1.078 -1.343 H1  C8Y 17 
C8Y H2  H2  H 0 1 N N N N N N 11.958 -2.936 -2.998 -0.733 -0.148 -1.936 H2  C8Y 18 
C8Y H3  H3  H 0 1 N N N N N N 13.211 -1.449 -1.295 -0.158 1.725  0.405  H3  C8Y 19 
C8Y H4  H4  H 0 1 N N N N N N 13.405 -1.206 -3.064 -0.130 2.185  -1.314 H4  C8Y 20 
C8Y H5  H5  H 0 1 N N N N N N 13.351 0.982  -2.101 -2.298 2.787  -0.293 H5  C8Y 21 
C8Y H6  H6  H 0 1 N N N N N N 11.950 0.581  -1.052 -2.519 1.517  -1.520 H6  C8Y 22 
C8Y H7  H7  H 0 1 N N N N N N 11.132 1.912  -2.868 -2.362 1.121  1.504  H7  C8Y 23 
C8Y H8  H8  H 0 1 N Y N N N N 8.278  -0.044 -3.464 -4.294 -1.298 0.301  H8  C8Y 24 
C8Y H9  H9  H 0 1 N N N N N N 9.577  -1.992 -3.271 -0.778 -1.903 -0.229 H9  C8Y 25 
C8Y H10 H10 H 0 1 N N N N N N 10.894 -1.613 -4.433 -0.390 -0.717 1.044  H10 C8Y 26 
C8Y H11 H11 H 0 1 N N N N N N 8.505  0.006  1.242  4.878  1.094  -0.512 H11 C8Y 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8Y NAA CAF TRIP N N 1  
C8Y CAF CAM SING N N 2  
C8Y CAJ NAO SING N N 3  
C8Y CAJ CAN SING N N 4  
C8Y NAO CAM SING N N 5  
C8Y NAO CAG SING N N 6  
C8Y CAM CAH SING N N 7  
C8Y CAG OAB DOUB N N 8  
C8Y CAN CAI SING N N 9  
C8Y CAN NAK SING N N 10 
C8Y CAI CAH SING N N 11 
C8Y NAK OAL SING N N 12 
C8Y OAC SAP DOUB N N 13 
C8Y OAL SAP SING N N 14 
C8Y SAP OAE DOUB N N 15 
C8Y SAP OAD SING N N 16 
C8Y NAK H1  SING N N 17 
C8Y CAN H2  SING N N 18 
C8Y CAI H3  SING N N 19 
C8Y CAI H4  SING N N 20 
C8Y CAH H5  SING N N 21 
C8Y CAH H6  SING N N 22 
C8Y CAM H7  SING N N 23 
C8Y CAG H8  SING N N 24 
C8Y CAJ H9  SING N N 25 
C8Y CAJ H10 SING N N 26 
C8Y OAD H11 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8Y SMILES           ACDLabs              12.01 "O=S(O)(=O)ONC1CCC(C#N)N(C=O)C1"                                                                          
C8Y InChI            InChI                1.03  "InChI=1S/C7H11N3O5S/c8-3-7-2-1-6(4-10(7)5-11)9-15-16(12,13)14/h5-7,9H,1-2,4H2,(H,12,13,14)/t6-,7+/m1/s1" 
C8Y InChIKey         InChI                1.03  QMRJJHLCVKRXGQ-RQJHMYQMSA-N                                                                               
C8Y SMILES_CANONICAL CACTVS               3.385 "O[S](=O)(=O)ON[C@@H]1CC[C@@H](C#N)N(C1)C=O"                                                              
C8Y SMILES           CACTVS               3.385 "O[S](=O)(=O)ON[CH]1CC[CH](C#N)N(C1)C=O"                                                                  
C8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C#N"                                                                 
C8Y SMILES           "OpenEye OEToolkits" 2.0.6 "C1CC(N(CC1NOS(=O)(=O)O)C=O)C#N"                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8Y "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile"              
C8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(3~{R},6~{S})-6-cyano-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8Y "Create component" 2017-09-19 RCSB 
C8Y "Initial release"  2018-08-01 RCSB 
C8Y "Modify synonyms"  2021-03-01 PDBE 
C8Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      C8Y 
_pdbx_chem_comp_synonyms.name         "open form - WCK 4234" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C8Y 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAG 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
