data_C1Y
#

_chem_comp.id                                   C1Y
_chem_comp.name                                 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propylpyrrolidin-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H21 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-deoxy-5'-Propyl-DADMe-Immucillin-A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       275.349
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C1Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6AYO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C1Y  C4     C1   C  0  1  Y  N  N  -31.766   8.347  94.688   2.233  -0.506  -0.343  C4     C1Y   1  
C1Y  C5     C2   C  0  1  Y  N  N  -32.262   9.545  94.033   3.377   0.303  -0.223  C5     C1Y   2  
C1Y  C6     C3   C  0  1  Y  N  N  -31.984  10.809  94.731   4.494  -0.227   0.434  C6     C1Y   3  
C1Y  C10    C4   C  0  1  N  N  N  -31.878   5.747  93.984  -0.151  -0.123  -1.430  C10    C1Y   4  
C1Y  C20    C5   C  0  1  N  N  N  -35.047   6.322  97.200  -4.738   0.021   0.070  C20    C1Y   5  
C1Y  C21    C6   C  0  1  N  N  N  -36.578   6.448  97.054  -5.225  -1.429   0.044  C21    C1Y   6  
C1Y  C8     C7   C  0  1  Y  N  N  -32.807   7.813  92.761   1.821   1.487  -1.318  C8     C1Y   7  
C1Y  C22    C8   C  0  1  N  N  N  -37.364   6.334  98.351  -6.684  -1.469  -0.415  C22    C1Y   8  
C1Y  "O3'"  O1   O  0  1  N  N  N  -33.011   3.151  97.144  -2.757   2.010   1.905  "O3'"  C1Y   9  
C1Y  "C3'"  C9   C  0  1  N  N  R  -33.170   4.576  97.209  -2.753   1.514   0.565  "C3'"  C1Y  10  
C1Y  "C2'"  C10  C  0  1  N  N  N  -32.075   5.204  96.384  -1.312   1.436   0.028  "C2'"  C1Y  11  
C1Y  "N1'"  N1   N  0  1  N  N  N  -32.611   5.022  95.020  -1.033   0.013  -0.263  "N1'"  C1Y  12  
C1Y  "C1'"  C11  C  0  1  N  N  N  -34.082   5.246  95.087  -2.355  -0.614  -0.519  "C1'"  C1Y  13  
C1Y  "C4'"  C12  C  0  1  N  N  S  -34.462   5.050  96.555  -3.279   0.061   0.529  "C4'"  C1Y  14  
C1Y  C9     C13  C  0  1  Y  N  N  -32.153   7.223  93.831   1.246   0.299  -1.055  C9     C1Y  15  
C1Y  N3     N2   N  0  1  Y  N  N  -31.097   8.396  95.866   2.252  -1.740   0.169  N3     C1Y  16  
C1Y  N7     N3   N  0  1  Y  N  N  -32.874   9.169  92.908   3.093   1.505  -0.826  N7     C1Y  17  
C1Y  N6     N4   N  0  1  N  N  N  -32.399  11.979  94.203   5.649   0.523   0.583  N6     C1Y  18  
C1Y  N1     N5   N  0  1  Y  N  N  -31.314  10.753  95.910   4.422  -1.466   0.912  N1     C1Y  19  
C1Y  C2     C14  C  0  1  Y  N  N  -30.885   9.588  96.441   3.326  -2.192   0.778  C2     C1Y  20  
C1Y  H1     H1   H  0  1  N  N  N  -32.110   5.268  93.021  -0.141  -1.163  -1.758  H1     C1Y  21  
C1Y  H2     H2   H  0  1  N  N  N  -30.805   5.634  94.200  -0.517   0.510  -2.238  H2     C1Y  22  
C1Y  H3     H3   H  0  1  N  N  N  -34.801   6.312  98.272  -4.816   0.449  -0.930  H3     C1Y  23  
C1Y  H4     H4   H  0  1  N  N  N  -34.580   7.198  96.725  -5.352   0.598   0.761  H4     C1Y  24  
C1Y  H5     H5   H  0  1  N  N  N  -36.798   7.429  96.608  -4.611  -2.006  -0.647  H5     C1Y  25  
C1Y  H6     H6   H  0  1  N  N  N  -36.922   5.652  96.377  -5.147  -1.857   1.043  H6     C1Y  26  
C1Y  H7     H7   H  0  1  N  N  N  -33.212   7.270  91.919   1.345   2.305  -1.839  H7     C1Y  27  
C1Y  H8     H8   H  0  1  N  N  N  -38.439   6.437  98.139  -7.298  -0.892   0.276  H8     C1Y  28  
C1Y  H9     H9   H  0  1  N  N  N  -37.173   5.353  98.810  -6.762  -1.041  -1.415  H9     C1Y  29  
C1Y  H10    H10  H  0  1  N  N  N  -37.049   7.130  99.042  -7.031  -2.502  -0.434  H10    C1Y  30  
C1Y  H11    H11  H  0  1  N  N  N  -33.692   2.732  97.658  -2.416   2.911   1.992  H11    C1Y  31  
C1Y  H12    H12  H  0  1  N  N  N  -33.119   4.937  98.247  -3.361   2.153  -0.075  H12    C1Y  32  
C1Y  H13    H13  H  0  1  N  N  N  -31.118   4.678  96.516  -1.223   2.026  -0.885  H13    C1Y  33  
C1Y  H14    H14  H  0  1  N  N  N  -31.945   6.269  96.628  -0.615   1.808   0.779  H14    C1Y  34  
C1Y  H16    H16  H  0  1  N  N  N  -34.330   6.266  94.759  -2.697  -0.393  -1.530  H16    C1Y  35  
C1Y  H17    H17  H  0  1  N  N  N  -34.610   4.518  94.453  -2.309  -1.690  -0.355  H17    C1Y  36  
C1Y  H18    H18  H  0  1  N  N  N  -35.210   4.246  96.623  -3.169  -0.415   1.503  H18    C1Y  37  
C1Y  H19    H19  H  0  1  N  N  N  -33.318   9.792  92.264   3.706   2.254  -0.893  H19    C1Y  38  
C1Y  H20    H20  H  0  1  N  N  N  -32.134  12.731  94.807   5.690   1.426   0.230  H20    C1Y  39  
C1Y  H21    H21  H  0  1  N  N  N  -31.977  12.108  93.306   6.417   0.145   1.040  H21    C1Y  40  
C1Y  H22    H22  H  0  1  N  N  N  -30.344   9.618  97.375   3.312  -3.193   1.182  H22    C1Y  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C1Y  C8     N7     SING  Y  N   1  
C1Y  C8     C9     DOUB  Y  N   2  
C1Y  N7     C5     SING  Y  N   3  
C1Y  C9     C10    SING  N  N   4  
C1Y  C9     C4     SING  Y  N   5  
C1Y  C10    "N1'"  SING  N  N   6  
C1Y  C5     C4     DOUB  Y  N   7  
C1Y  C5     C6     SING  Y  N   8  
C1Y  N6     C6     SING  N  N   9  
C1Y  C4     N3     SING  Y  N  10  
C1Y  C6     N1     DOUB  Y  N  11  
C1Y  "N1'"  "C1'"  SING  N  N  12  
C1Y  "N1'"  "C2'"  SING  N  N  13  
C1Y  "C1'"  "C4'"  SING  N  N  14  
C1Y  N3     C2     DOUB  Y  N  15  
C1Y  N1     C2     SING  Y  N  16  
C1Y  "C2'"  "C3'"  SING  N  N  17  
C1Y  "C4'"  C20    SING  N  N  18  
C1Y  "C4'"  "C3'"  SING  N  N  19  
C1Y  C21    C20    SING  N  N  20  
C1Y  C21    C22    SING  N  N  21  
C1Y  "O3'"  "C3'"  SING  N  N  22  
C1Y  C10    H1     SING  N  N  23  
C1Y  C10    H2     SING  N  N  24  
C1Y  C20    H3     SING  N  N  25  
C1Y  C20    H4     SING  N  N  26  
C1Y  C21    H5     SING  N  N  27  
C1Y  C21    H6     SING  N  N  28  
C1Y  C8     H7     SING  N  N  29  
C1Y  C22    H8     SING  N  N  30  
C1Y  C22    H9     SING  N  N  31  
C1Y  C22    H10    SING  N  N  32  
C1Y  "O3'"  H11    SING  N  N  33  
C1Y  "C3'"  H12    SING  N  N  34  
C1Y  "C2'"  H13    SING  N  N  35  
C1Y  "C2'"  H14    SING  N  N  36  
C1Y  "C1'"  H16    SING  N  N  37  
C1Y  "C1'"  H17    SING  N  N  38  
C1Y  "C4'"  H18    SING  N  N  39  
C1Y  N7     H19    SING  N  N  40  
C1Y  N6     H20    SING  N  N  41  
C1Y  N6     H21    SING  N  N  42  
C1Y  C2     H22    SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C1Y  SMILES            ACDLabs               12.01  "c12ncnc(c1ncc2CN3CC(O)C(CCC)C3)N"  
C1Y  InChI             InChI                 1.03   "InChI=1S/C14H21N5O/c1-2-3-9-5-19(7-11(9)20)6-10-4-16-13-12(10)17-8-18-14(13)15/h4,8-9,11,16,20H,2-3,5-7H2,1H3,(H2,15,17,18)/t9-,11-/m0/s1"  
C1Y  InChIKey          InChI                 1.03   XCPKSVNKJHKGNS-ONGXEEELSA-N  
C1Y  SMILES_CANONICAL  CACTVS                3.385  "CCC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23"  
C1Y  SMILES            CACTVS                3.385  "CCC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23"  
C1Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c2ncnc3N"  
C1Y  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C1Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propylpyrrolidin-3-ol"  
C1Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-propyl-pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C1Y  "Create component"  2017-09-11  RCSB  
C1Y  "Initial release"   2018-09-12  RCSB  
C1Y  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     C1Y
_pdbx_chem_comp_synonyms.name        "5'-deoxy-5'-Propyl-DADMe-Immucillin-A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
