data_BYY
#

_chem_comp.id                                   BYY
_chem_comp.name                                 "5-[(3aS,4S,6aR)-2-oxohexahydro-1H-selenopheno[3,4-d]imidazol-4-yl]pentanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H16 N2 O3 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        selenobiotin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-04-18
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       291.206
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BYY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JD2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BYY  O3   O1   O   0  1  N  N  N  19.601   2.621   4.225   2.868  -2.872  -1.168  O3   BYY   1  
BYY  C3   C1   C   0  1  N  N  N  19.776   1.419   4.024   2.800  -1.933  -0.398  C3   BYY   2  
BYY  N1   N1   N   0  1  N  N  N  19.123   0.470   4.703   3.700  -0.940  -0.376  N1   BYY   3  
BYY  N2   N2   N   0  1  N  N  N  20.610   0.936   3.096   1.816  -1.794   0.501  N2   BYY   4  
BYY  C4   C2   C   0  1  N  N  S  20.652  -0.564   3.171   2.039  -0.555   1.264  C4   BYY   5  
BYY  C5   C3   C   0  1  N  N  R  19.555  -0.887   4.238   3.319   0.026   0.668  C5   BYY   6  
BYY  C6   C4   C   0  1  N  N  N  18.364  -1.593   3.576   3.179   1.426   0.030  C6   BYY   7  
BYY  SE1  SE1  SE  0  0  N  N  N  18.450  -0.853   1.772   1.245   1.457  -0.438  SE1  BYY   8  
BYY  C2   C5   C   0  1  N  N  S  20.330  -1.253   1.825   0.787   0.343   1.141  C2   BYY   9  
BYY  C7   C6   C   0  1  N  N  N  21.066  -0.579   0.654  -0.464  -0.497   0.876  C7   BYY  10  
BYY  C8   C7   C   0  1  N  N  N  20.634  -1.218  -0.667  -1.652   0.429   0.605  C8   BYY  11  
BYY  C9   C8   C   0  1  N  N  N  21.548  -0.800  -1.829  -2.903  -0.410   0.340  C9   BYY  12  
BYY  C10  C9   C   0  1  N  N  N  21.286  -1.672  -3.062  -4.090   0.516   0.069  C10  BYY  13  
BYY  C11  C10  C   0  1  N  N  N  22.141  -2.949  -3.054  -5.323  -0.311  -0.192  C11  BYY  14  
BYY  O11  O2   O   0  1  N  N  N  23.245  -2.900  -2.467  -6.493   0.292  -0.456  O11  BYY  15  
BYY  O12  O3   O   0  1  N  N  N  21.674  -3.939  -3.656  -5.258  -1.518  -0.165  O12  BYY  16  
BYY  H1   H1   H   0  1  N  N  N  18.445   0.641   5.418   4.476  -0.869  -0.953  H1   BYY  17  
BYY  H2   H2   H   0  1  N  N  N  21.129   1.492   2.447   1.079  -2.410   0.629  H2   BYY  18  
BYY  H3   H3   H   0  1  N  N  N  21.633  -0.902   3.537   2.200  -0.798   2.314  H3   BYY  19  
BYY  H4   H4   H   0  1  N  N  N  19.971  -1.489   5.059   4.095   0.060   1.433  H4   BYY  20  
BYY  H5   H5   H   0  1  N  N  N  17.416  -1.338   4.073   3.419   2.209   0.749  H5   BYY  21  
BYY  H6   H6   H   0  1  N  N  N  18.493  -2.685   3.571   3.799   1.513  -0.862  H6   BYY  22  
BYY  H7   H7   H   0  1  N  N  N  20.456  -2.345   1.852   0.661   0.959   2.031  H7   BYY  23  
BYY  H8   H8   H   0  1  N  N  N  22.151  -0.706   0.783  -0.296  -1.135   0.008  H8   BYY  24  
BYY  H9   H9   H   0  1  N  N  N  20.822   0.493   0.638  -0.678  -1.116   1.747  H9   BYY  25  
BYY  H10  H10  H   0  1  N  N  N  19.604  -0.905  -0.894  -1.820   1.067   1.472  H10  BYY  26  
BYY  H11  H11  H   0  1  N  N  N  20.670  -2.312  -0.562  -1.438   1.049  -0.266  H11  BYY  27  
BYY  H12  H12  H   0  1  N  N  N  22.598  -0.914  -1.522  -2.735  -1.049  -0.528  H12  BYY  28  
BYY  H13  H13  H   0  1  N  N  N  21.352   0.252  -2.082  -3.116  -1.030   1.211  H13  BYY  29  
BYY  H14  H14  H   0  1  N  N  N  21.523  -1.091  -3.965  -4.258   1.154   0.936  H14  BYY  30  
BYY  H15  H15  H   0  1  N  N  N  20.223  -1.956  -3.077  -3.877   1.135  -0.802  H15  BYY  31  
BYY  H16  H16  H   0  1  N  N  N  23.684  -3.739  -2.547  -7.255  -0.280  -0.617  H16  BYY  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BYY  O12  C11  DOUB  N  N   1  
BYY  C10  C11  SING  N  N   2  
BYY  C10  C9   SING  N  N   3  
BYY  C11  O11  SING  N  N   4  
BYY  C9   C8   SING  N  N   5  
BYY  C8   C7   SING  N  N   6  
BYY  C7   C2   SING  N  N   7  
BYY  SE1  C2   SING  N  N   8  
BYY  SE1  C6   SING  N  N   9  
BYY  C2   C4   SING  N  N  10  
BYY  N2   C4   SING  N  N  11  
BYY  N2   C3   SING  N  N  12  
BYY  C4   C5   SING  N  N  13  
BYY  C6   C5   SING  N  N  14  
BYY  C3   O3   DOUB  N  N  15  
BYY  C3   N1   SING  N  N  16  
BYY  C5   N1   SING  N  N  17  
BYY  N1   H1   SING  N  N  18  
BYY  N2   H2   SING  N  N  19  
BYY  C4   H3   SING  N  N  20  
BYY  C5   H4   SING  N  N  21  
BYY  C6   H5   SING  N  N  22  
BYY  C6   H6   SING  N  N  23  
BYY  C2   H7   SING  N  N  24  
BYY  C7   H8   SING  N  N  25  
BYY  C7   H9   SING  N  N  26  
BYY  C8   H10  SING  N  N  27  
BYY  C8   H11  SING  N  N  28  
BYY  C9   H12  SING  N  N  29  
BYY  C9   H13  SING  N  N  30  
BYY  C10  H14  SING  N  N  31  
BYY  C10  H15  SING  N  N  32  
BYY  O11  H16  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BYY  SMILES            ACDLabs               12.01  "O=C1NC2C(N1)C([Se]C2)CCCCC(O)=O"  
BYY  InChI             InChI                 1.03   "InChI=1S/C10H16N2O3Se/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/t6-,7-,9-/m0/s1"  
BYY  InChIKey          InChI                 1.03   HVUDXAKXEONARI-ZKWXMUAHSA-N  
BYY  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)CCCC[C@@H]1[Se]C[C@@H]2NC(=O)N[C@H]12"  
BYY  SMILES            CACTVS                3.385  "OC(=O)CCCC[CH]1[Se]C[CH]2NC(=O)N[CH]12"  
BYY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C1[C@H]2[C@@H]([C@@H]([Se]1)CCCCC(=O)O)NC(=O)N2"  
BYY  SMILES            "OpenEye OEToolkits"  2.0.4  "C1C2C(C([Se]1)CCCCC(=O)O)NC(=O)N2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BYY  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(3aS,4S,6aR)-2-oxohexahydro-1H-selenopheno[3,4-d]imidazol-4-yl]pentanoic acid"  
BYY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydroselenopheno[3,4-d]imidazol-4-yl]pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BYY  "Create component"  2016-04-18  RCSB  
BYY  "Initial release"   2016-11-16  RCSB  
BYY  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BYY
_pdbx_chem_comp_synonyms.name        selenobiotin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
