data_BDY
# 
_chem_comp.id                                    BDY 
_chem_comp.name                                  "N~3~-(2,6-dichlorobenzyl)-5-(4-{[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]carbonyl}phenyl)pyrazine-2,3-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H30 Cl2 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-20 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BDY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3LCD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BDY N1   N1   N  0 1 N N N -19.948 4.831  -17.470 4.697  3.751  0.353  N1   BDY 1  
BDY N3   N3   N  0 1 Y N N -20.139 2.706  -18.445 2.377  4.042  0.601  N3   BDY 2  
BDY C4   C4   C  0 1 Y N N -20.956 1.720  -18.819 1.149  3.553  0.645  C4   BDY 3  
BDY C5   C5   C  0 1 Y N N -22.316 1.773  -18.651 0.935  2.188  0.478  C5   BDY 4  
BDY C7   C7   C  0 1 Y N N -22.123 3.853  -17.724 3.196  1.857  0.229  C7   BDY 5  
BDY C10  C10  C  0 1 Y N N -24.687 4.461  -15.814 5.376  -1.122 -0.372 C10  BDY 6  
BDY C13  C13  C  0 1 Y N N -26.339 2.964  -14.859 7.302  -2.235 0.517  C13  BDY 7  
BDY C15  C15  C  0 1 Y N N -24.776 4.042  -13.447 7.088  -1.917 -1.847 C15  BDY 8  
BDY C20  C20  C  0 1 Y N N -25.186 -0.597 -18.717 -2.811 2.005  0.682  C20  BDY 9  
BDY C21  C21  C  0 1 Y N N -24.841 -1.423 -19.763 -3.020 0.625  0.619  C21  BDY 10 
BDY C22  C22  C  0 1 Y N N -23.670 -1.199 -20.455 -1.929 -0.241 0.511  C22  BDY 11 
BDY C24  C24  C  0 1 N N N -25.773 -2.516 -20.108 -4.392 0.083  0.669  C24  BDY 12 
BDY C28  C28  C  0 1 N N N -24.024 -5.696 -20.083 -4.274 -3.427 1.745  C28  BDY 13 
BDY C2   C2   C  0 1 Y N N -20.749 3.766  -17.893 3.408  3.235  0.398  C2   BDY 14 
BDY N6   N6   N  0 1 Y N N -22.914 2.842  -18.108 1.968  1.370  0.274  N6   BDY 15 
BDY N8   N8   N  0 1 N N N -22.648 5.026  -17.127 4.276  1.007  0.017  N8   BDY 16 
BDY C9   C9   C  0 1 N N N -24.107 5.131  -17.036 4.053  -0.430 -0.160 C9   BDY 17 
BDY C11  C11  C  0 1 Y N N -25.762 3.595  -15.940 6.088  -1.600 0.712  C11  BDY 18 
BDY CL12 CL12 CL 0 0 N N N -26.456 3.272  -17.478 5.460  -1.405 2.319  CL12 BDY 19 
BDY C14  C14  C  0 1 Y N N -25.840 3.183  -13.597 7.803  -2.390 -0.762 C14  BDY 20 
BDY C16  C16  C  0 1 Y N N -24.210 4.675  -14.533 5.874  -1.283 -1.652 C16  BDY 21 
BDY CL17 CL17 CL 0 0 N N N -22.893 5.739  -14.204 4.977  -0.689 -3.015 CL17 BDY 22 
BDY C18  C18  C  0 1 Y N N -23.175 0.677  -19.042 -0.442 1.644  0.528  C18  BDY 23 
BDY C19  C19  C  0 1 Y N N -24.356 0.445  -18.363 -1.531 2.510  0.637  C19  BDY 24 
BDY C23  C23  C  0 1 Y N N -22.842 -0.157 -20.091 -0.650 0.265  0.465  C23  BDY 25 
BDY O25  O25  O  0 1 N N N -26.958 -2.271 -19.923 -5.346 0.832  0.582  O25  BDY 26 
BDY N26  N26  N  0 1 N N N -25.287 -3.730 -20.608 -4.588 -1.243 0.810  N26  BDY 27 
BDY C27  C27  C  0 1 N N N -23.950 -4.204 -20.327 -3.537 -2.245 1.067  C27  BDY 28 
BDY C29  C29  C  0 1 N N N -25.469 -6.087 -20.230 -5.624 -3.431 0.982  C29  BDY 29 
BDY C30  C30  C  0 1 N N R -26.208 -4.849 -20.689 -5.886 -1.931 0.733  C30  BDY 30 
BDY C31  C31  C  0 1 N N N -26.774 -5.104 -22.077 -6.498 -1.732 -0.655 C31  BDY 31 
BDY N32  N32  N  0 1 N N N -27.285 -3.890 -22.706 -6.742 -0.302 -0.883 N32  BDY 32 
BDY C33  C33  C  0 1 N N N -27.239 -4.117 -24.151 -6.956 -0.024 -2.315 C33  BDY 33 
BDY C34  C34  C  0 1 N N N -28.555 -3.660 -24.739 -8.331 0.665  -2.447 C34  BDY 34 
BDY C35  C35  C  0 1 N N N -29.485 -3.422 -23.576 -8.566 1.250  -1.029 C35  BDY 35 
BDY C36  C36  C  0 1 N N N -28.686 -3.704 -22.326 -7.928 0.160  -0.131 C36  BDY 36 
BDY HN1  HN1  H  0 1 N N N -18.988 4.622  -17.657 4.843  4.703  0.469  HN1  BDY 37 
BDY HN1A HN1A H  0 0 N N N -20.210 5.661  -17.962 5.452  3.159  0.208  HN1A BDY 38 
BDY H4   H4   H  0 1 N N N -20.527 0.840  -19.275 0.311  4.214  0.810  H4   BDY 39 
BDY H13  H13  H  0 1 N N N -27.179 2.301  -15.003 7.859  -2.609 1.363  H13  BDY 40 
BDY H15  H15  H  0 1 N N N -24.377 4.224  -12.460 7.480  -2.038 -2.846 H15  BDY 41 
BDY H20  H20  H  0 1 N N N -26.105 -0.765 -18.175 -3.654 2.676  0.762  H20  BDY 42 
BDY H22  H22  H  0 1 N N N -23.401 -1.839 -21.282 -2.089 -1.308 0.462  H22  BDY 43 
BDY H28  H28  H  0 1 N N N -23.404 -6.235 -20.815 -3.735 -4.362 1.591  H28  BDY 44 
BDY H28A H28A H  0 0 N N N -23.662 -5.938 -19.073 -4.426 -3.236 2.807  H28A BDY 45 
BDY HN8  HN8  H  0 1 N N N -22.293 5.063  -16.193 5.177  1.365  -0.015 HN8  BDY 46 
BDY H9   H9   H  0 1 N N N -24.540 4.652  -17.926 3.414  -0.595 -1.027 H9   BDY 47 
BDY H9A  H9A  H  0 1 N N N -24.371 6.198  -16.999 3.571  -0.835 0.730  H9A  BDY 48 
BDY H14  H14  H  0 1 N N N -26.275 2.690  -12.740 8.751  -2.885 -0.914 H14  BDY 49 
BDY H19  H19  H  0 1 N N N -24.633 1.090  -17.542 -1.370 3.577  0.686  H19  BDY 50 
BDY H23  H23  H  0 1 N N N -21.923 0.008  -20.633 0.193  -0.404 0.381  H23  BDY 51 
BDY H27  H27  H  0 1 N N N -23.551 -3.697 -19.436 -2.780 -1.836 1.736  H27  BDY 52 
BDY H27A H27A H  0 0 N N N -23.290 -3.996 -21.182 -3.083 -2.567 0.130  H27A BDY 53 
BDY H29  H29  H  0 1 N N N -25.575 -6.894 -20.970 -5.532 -3.968 0.038  H29  BDY 54 
BDY H29A H29A H  0 0 N N N -25.871 -6.440 -19.269 -6.414 -3.863 1.597  H29A BDY 55 
BDY H30  H30  H  0 1 N N N -27.071 -4.602 -20.053 -6.558 -1.540 1.497  H30  BDY 56 
BDY H31  H31  H  0 1 N N N -25.973 -5.513 -22.710 -5.812 -2.109 -1.413 H31  BDY 57 
BDY H31A H31A H  0 0 N N N -27.600 -5.825 -21.989 -7.441 -2.276 -0.717 H31A BDY 58 
BDY H33  H33  H  0 1 N N N -26.411 -3.545 -24.595 -6.173 0.638  -2.685 H33  BDY 59 
BDY H33A H33A H  0 0 N N N -27.087 -5.186 -24.358 -6.953 -0.957 -2.878 H33A BDY 60 
BDY H34  H34  H  0 1 N N N -28.417 -2.734 -25.317 -8.294 1.460  -3.191 H34  BDY 61 
BDY H34A H34A H  0 0 N N N -28.965 -4.431 -25.408 -9.103 -0.063 -2.697 H34A BDY 62 
BDY H35  H35  H  0 1 N N N -29.845 -2.383 -23.577 -8.052 2.204  -0.910 H35  BDY 63 
BDY H35A H35A H  0 0 N N N -30.356 -4.091 -23.636 -9.631 1.353  -0.821 H35A BDY 64 
BDY H36  H36  H  0 1 N N N -29.065 -4.614 -21.838 -8.626 -0.664 0.020  H36  BDY 65 
BDY H36A H36A H  0 0 N N N -28.774 -2.859 -21.628 -7.629 0.585  0.827  H36A BDY 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BDY N1  C2   SING N N 1  
BDY N3  C4   DOUB Y N 2  
BDY N3  C2   SING Y N 3  
BDY C4  C5   SING Y N 4  
BDY C5  N6   DOUB Y N 5  
BDY C5  C18  SING Y N 6  
BDY C7  C2   DOUB Y N 7  
BDY C7  N6   SING Y N 8  
BDY C7  N8   SING N N 9  
BDY C10 C9   SING N N 10 
BDY C10 C11  DOUB Y N 11 
BDY C10 C16  SING Y N 12 
BDY C13 C11  SING Y N 13 
BDY C13 C14  DOUB Y N 14 
BDY C15 C14  SING Y N 15 
BDY C15 C16  DOUB Y N 16 
BDY C20 C21  DOUB Y N 17 
BDY C20 C19  SING Y N 18 
BDY C21 C22  SING Y N 19 
BDY C21 C24  SING N N 20 
BDY C22 C23  DOUB Y N 21 
BDY C24 O25  DOUB N N 22 
BDY C24 N26  SING N N 23 
BDY C28 C27  SING N N 24 
BDY C28 C29  SING N N 25 
BDY N8  C9   SING N N 26 
BDY C11 CL12 SING N N 27 
BDY C16 CL17 SING N N 28 
BDY C18 C19  DOUB Y N 29 
BDY C18 C23  SING Y N 30 
BDY N26 C27  SING N N 31 
BDY N26 C30  SING N N 32 
BDY C29 C30  SING N N 33 
BDY C30 C31  SING N N 34 
BDY C31 N32  SING N N 35 
BDY N32 C33  SING N N 36 
BDY N32 C36  SING N N 37 
BDY C33 C34  SING N N 38 
BDY C34 C35  SING N N 39 
BDY C35 C36  SING N N 40 
BDY N1  HN1  SING N N 41 
BDY N1  HN1A SING N N 42 
BDY C4  H4   SING N N 43 
BDY C13 H13  SING N N 44 
BDY C15 H15  SING N N 45 
BDY C20 H20  SING N N 46 
BDY C22 H22  SING N N 47 
BDY C28 H28  SING N N 48 
BDY C28 H28A SING N N 49 
BDY N8  HN8  SING N N 50 
BDY C9  H9   SING N N 51 
BDY C9  H9A  SING N N 52 
BDY C14 H14  SING N N 53 
BDY C19 H19  SING N N 54 
BDY C23 H23  SING N N 55 
BDY C27 H27  SING N N 56 
BDY C27 H27A SING N N 57 
BDY C29 H29  SING N N 58 
BDY C29 H29A SING N N 59 
BDY C30 H30  SING N N 60 
BDY C31 H31  SING N N 61 
BDY C31 H31A SING N N 62 
BDY C33 H33  SING N N 63 
BDY C33 H33A SING N N 64 
BDY C34 H34  SING N N 65 
BDY C34 H34A SING N N 66 
BDY C35 H35  SING N N 67 
BDY C35 H35A SING N N 68 
BDY C36 H36  SING N N 69 
BDY C36 H36A SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BDY SMILES_CANONICAL CACTVS               3.352 "Nc1ncc(nc1NCc2c(Cl)cccc2Cl)c3ccc(cc3)C(=O)N4CCC[C@@H]4CN5CCCC5"                                                                                                                                            
BDY SMILES           CACTVS               3.352 "Nc1ncc(nc1NCc2c(Cl)cccc2Cl)c3ccc(cc3)C(=O)N4CCC[CH]4CN5CCCC5"                                                                                                                                              
BDY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(c(c(c1)Cl)CNc2c(ncc(n2)c3ccc(cc3)C(=O)N4CCC[C@@H]4CN5CCCC5)N)Cl"                                                                                                                                      
BDY SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(c(c(c1)Cl)CNc2c(ncc(n2)c3ccc(cc3)C(=O)N4CCCC4CN5CCCC5)N)Cl"                                                                                                                                           
BDY InChI            InChI                1.03  "InChI=1S/C27H30Cl2N6O/c28-22-6-3-7-23(29)21(22)15-32-26-25(30)31-16-24(33-26)18-8-10-19(11-9-18)27(36)35-14-4-5-20(35)17-34-12-1-2-13-34/h3,6-11,16,20H,1-2,4-5,12-15,17H2,(H2,30,31)(H,32,33)/t20-/m1/s1" 
BDY InChIKey         InChI                1.03  PVBCEWZVPUKFNT-HXUWFJFHSA-N                                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[4-[5-azanyl-6-[(2,6-dichlorophenyl)methylamino]pyrazin-2-yl]phenyl]-[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidin-1-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BDY "Create component"     2010-01-20 RCSB 
BDY "Modify aromatic_flag" 2011-06-04 RCSB 
BDY "Modify descriptor"    2011-06-04 RCSB 
# 
