data_B8Y
# 
_chem_comp.id                                    B8Y 
_chem_comp.name                                  "N-{[2-chloro-5-(4-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-3-oxo-3,4-dihydropyrazin-2-yl)phenyl]methyl}-4-fluorobenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 Cl2 F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-07 
_chem_comp.pdbx_modified_date                    2017-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        663.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B8Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5QBZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B8Y C26  C1  C  0 1 N N N -23.962 -2.848 -8.186  -4.985  0.046  -0.368 C26  B8Y 1  
B8Y C29  C2  C  0 1 N N N -23.403 -5.695 -7.963  -5.650  -2.770 -0.512 C29  B8Y 2  
B8Y C30  C3  C  0 1 N N N -24.866 -5.248 -7.853  -6.636  -1.711 -1.015 C30  B8Y 3  
B8Y C1   C4  C  0 1 Y N N -23.891 -3.975 -13.073 -9.776  2.004  1.756  C1   B8Y 4  
B8Y C14  C5  C  0 1 N N N -27.127 -3.534 -9.890  -7.352  1.092  -1.994 C14  B8Y 5  
B8Y C2   C6  C  0 1 Y N N -23.992 -3.975 -11.665 -8.746  1.196  1.313  C2   B8Y 6  
B8Y C20  C7  C  0 1 N N N -25.078 -3.843 -8.448  -6.437  -0.417 -0.219 C20  B8Y 7  
B8Y C22  C8  C  0 1 N N N -28.779 -3.269 -11.710 -8.628  2.781  -3.331 C22  B8Y 8  
B8Y C27  C9  C  0 1 N N N -22.595 -3.498 -8.302  -4.048  -1.063 0.116  C27  B8Y 9  
B8Y C3   C10 C  0 1 Y N N -25.263 -3.791 -11.140 -8.322  1.279  -0.004 C3   B8Y 10 
B8Y C37  C11 C  0 1 N N N -22.645 -4.413 -6.027  -3.299  -3.321 -0.334 C37  B8Y 11 
B8Y C39  C12 C  0 1 N N N -22.147 -5.565 -5.164  -1.900  -2.865 -0.751 C39  B8Y 12 
B8Y C4   C13 C  0 1 Y N N -26.361 -3.618 -11.979 -8.937  2.177  -0.878 C4   B8Y 13 
B8Y C41  C14 C  0 1 N N N -21.441 -5.184 -3.860  -0.883  -3.951 -0.394 C41  B8Y 14 
B8Y C45  C15 C  0 1 N N N -22.541 -3.679 -2.271  1.237   -2.824 0.069  C45  B8Y 15 
B8Y C46  C16 C  0 1 N N N -23.498 -3.547 -1.193  2.573   -2.409 -0.377 C46  B8Y 16 
B8Y C48  C17 C  0 1 N N N -23.992 -5.819 -1.240  2.172   -3.403 -2.413 C48  B8Y 17 
B8Y C49  C18 C  0 1 N N N -23.116 -6.021 -2.244  0.934   -3.800 -2.034 C49  B8Y 18 
B8Y C5   C19 C  0 1 Y N N -26.237 -3.624 -13.354 -9.970  2.984  -0.425 C5   B8Y 19 
B8Y C6   C20 C  0 1 Y N N -24.989 -3.802 -13.898 -10.387 2.895  0.888  C6   B8Y 20 
B8Y C60  C21 C  0 1 Y N N -23.748 -2.225 -0.611  3.464   -1.650 0.530  C60  B8Y 21 
B8Y C62  C22 C  0 1 Y N N -22.734 -1.283 -0.488  2.922   -0.827 1.517  C62  B8Y 22 
B8Y C63  C23 C  0 1 Y N N -22.999 -0.042 0.046   3.758   -0.123 2.359  C63  B8Y 23 
B8Y C64  C24 C  0 1 Y N N -24.280 0.264  0.453   5.132   -0.232 2.226  C64  B8Y 24 
B8Y C65  C25 C  0 1 Y N N -25.330 -0.660 0.339   5.675   -1.048 1.247  C65  B8Y 25 
B8Y C66  C26 C  0 1 Y N N -25.028 -1.901 -0.208  4.850   -1.761 0.403  C66  B8Y 26 
B8Y C75  C27 C  0 1 N N N -26.736 -0.344 0.769   7.172   -1.161 1.107  C75  B8Y 27 
B8Y C79  C28 C  0 1 N N N -28.825 -0.679 -0.483  9.019   0.179  0.253  C79  B8Y 28 
B8Y C83  C29 C  0 1 Y N N -29.570 -0.421 -1.742  9.549   1.404  -0.379 C83  B8Y 29 
B8Y C85  C30 C  0 1 Y N N -30.959 -0.328 -1.758  10.919  1.535  -0.615 C85  B8Y 30 
B8Y C86  C31 C  0 1 Y N N -31.640 -0.090 -2.939  11.407  2.680  -1.206 C86  B8Y 31 
B8Y C87  C32 C  0 1 Y N N -30.913 0.048  -4.089  10.541  3.701  -1.566 C87  B8Y 32 
B8Y C88  C33 C  0 1 Y N N -29.547 -0.039 -4.122  9.180   3.577  -1.334 C88  B8Y 33 
B8Y C89  C34 C  0 1 Y N N -28.874 -0.272 -2.936  8.680   2.433  -0.749 C89  B8Y 34 
B8Y F96  F1  F  0 1 N N N -31.573 0.285  -5.255  11.025  4.822  -2.145 F96  B8Y 35 
B8Y N13  N1  N  0 1 N N N -27.454 -3.466 -11.216 -8.307  2.034  -2.112 N13  B8Y 36 
B8Y N15  N2  N  0 1 N N N -25.759 -3.740 -9.825  -7.337  0.618  -0.734 N15  B8Y 37 
B8Y N28  N3  N  0 1 N N N -22.488 -4.681 -7.463  -4.276  -2.278 -0.677 N28  B8Y 38 
B8Y N43  N4  N  0 1 N N N -22.400 -4.971 -2.753  0.458   -3.515 -0.793 N43  B8Y 39 
B8Y N47  N5  N  0 1 N N N -24.219 -4.579 -0.681  2.968   -2.722 -1.597 N47  B8Y 40 
B8Y N77  N6  N  0 1 N N N -27.589 -0.176 -0.403  7.696   0.055  0.480  N77  B8Y 41 
B8Y O56  O1  O  0 1 N N N -21.894 -2.749 -2.733  0.842   -2.556 1.190  O56  B8Y 42 
B8Y O58  O2  O  0 1 N N N -27.894 -3.433 -8.953  -6.615  0.725  -2.890 O58  B8Y 43 
B8Y O81  O3  O  0 1 N N N -29.338 -1.325 0.425   9.777   -0.718 0.570  O81  B8Y 44 
B8Y CL24 CL1 CL 0 0 N N N -22.336 -4.204 -13.826 -10.313 1.896  3.403  CL24 B8Y 45 
B8Y CL73 CL2 CL 0 0 N N N -24.559 1.854  1.133   6.177   0.657  3.289  CL73 B8Y 46 
B8Y H1   H1  H  0 1 N N N -24.032 -2.031 -8.920  -4.779  0.266  -1.416 H1   B8Y 47 
B8Y H2   H2  H  0 1 N N N -24.078 -2.440 -7.171  -4.827  0.943  0.230  H2   B8Y 48 
B8Y H3   H3  H  0 1 N N N -23.267 -6.616 -7.378  -5.839  -2.971 0.542  H3   B8Y 49 
B8Y H4   H4  H  0 1 N N N -23.170 -5.894 -9.019  -5.779  -3.687 -1.086 H4   B8Y 50 
B8Y H5   H5  H  0 1 N N N -25.156 -5.233 -6.792  -6.456  -1.518 -2.072 H5   B8Y 51 
B8Y H6   H6  H  0 1 N N N -25.500 -5.965 -8.396  -7.656  -2.069 -0.879 H6   B8Y 52 
B8Y H7   H7  H  0 1 N N N -23.128 -4.111 -11.032 -8.272  0.502  1.992  H7   B8Y 53 
B8Y H8   H8  H  0 1 N N N -25.870 -3.454 -7.792  -6.655  -0.600 0.833  H8   B8Y 54 
B8Y H9   H9  H  0 1 N N N -29.476 -3.175 -10.864 -8.027  3.690  -3.369 H9   B8Y 55 
B8Y H10  H10 H  0 1 N N N -28.812 -2.351 -12.315 -8.410  2.165  -4.203 H10  B8Y 56 
B8Y H11  H11 H  0 1 N N N -29.070 -4.129 -12.331 -9.686  3.045  -3.327 H11  B8Y 57 
B8Y H12  H12 H  0 1 N N N -22.426 -3.788 -9.350  -3.014  -0.741 -0.002 H12  B8Y 58 
B8Y H13  H13 H  0 1 N N N -21.828 -2.772 -7.994  -4.246  -1.273 1.167  H13  B8Y 59 
B8Y H14  H14 H  0 1 N N N -22.074 -3.508 -5.772  -3.553  -4.242 -0.859 H14  B8Y 60 
B8Y H15  H15 H  0 1 N N N -23.711 -4.246 -5.813  -3.319  -3.498 0.741  H15  B8Y 61 
B8Y H16  H16 H  0 1 N N N -23.015 -6.188 -4.904  -1.880  -2.688 -1.826 H16  B8Y 62 
B8Y H17  H17 H  0 1 N N N -21.440 -6.154 -5.767  -1.646  -1.944 -0.226 H17  B8Y 63 
B8Y H18  H18 H  0 1 N N N -20.750 -5.993 -3.581  -0.902  -4.128 0.681  H18  B8Y 64 
B8Y H19  H19 H  0 1 N N N -20.873 -4.256 -4.022  -1.136  -4.873 -0.919 H19  B8Y 65 
B8Y H21  H21 H  0 1 N N N -24.541 -6.666 -0.856  2.521   -3.645 -3.406 H21  B8Y 66 
B8Y H22  H22 H  0 1 N N N -22.979 -7.013 -2.648  0.317   -4.352 -2.727 H22  B8Y 67 
B8Y H24  H24 H  0 1 N N N -27.102 -3.492 -13.987 -10.447 3.681  -1.098 H24  B8Y 68 
B8Y H25  H25 H  0 1 N N N -24.864 -3.807 -14.971 -11.191 3.524  1.241  H25  B8Y 69 
B8Y H26  H26 H  0 1 N N N -21.733 -1.526 -0.813  1.851   -0.741 1.622  H26  B8Y 70 
B8Y H27  H27 H  0 1 N N N -22.208 0.687  0.145   3.340   0.515  3.124  H27  B8Y 71 
B8Y H28  H28 H  0 1 N N N -25.815 -2.631 -0.321  5.274   -2.400 -0.357 H28  B8Y 72 
B8Y H29  H29 H  0 1 N N N -26.737 0.586  1.357   7.620   -1.283 2.093  H29  B8Y 73 
B8Y H30  H30 H  0 1 N N N -27.123 -1.169 1.386   7.415   -2.024 0.488  H30  B8Y 74 
B8Y H31  H31 H  0 1 N N N -31.512 -0.443 -0.837  11.594  0.741  -0.335 H31  B8Y 75 
B8Y H32  H32 H  0 1 N N N -32.717 -0.015 -2.952  12.467  2.783  -1.389 H32  B8Y 76 
B8Y H33  H33 H  0 1 N N N -29.008 0.072  -5.051  8.509   4.375  -1.617 H33  B8Y 77 
B8Y H34  H34 H  0 1 N N N -27.796 -0.339 -2.938  7.619   2.337  -0.569 H34  B8Y 78 
B8Y H36  H36 H  0 1 N N N -27.232 0.339  -1.182  7.092   0.770  0.228  H36  B8Y 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B8Y C6   C5   DOUB Y N 1  
B8Y C6   C1   SING Y N 2  
B8Y CL24 C1   SING N N 3  
B8Y C5   C4   SING Y N 4  
B8Y C1   C2   DOUB Y N 5  
B8Y C4   N13  SING N N 6  
B8Y C4   C3   DOUB Y N 7  
B8Y C22  N13  SING N N 8  
B8Y C2   C3   SING Y N 9  
B8Y N13  C14  SING N N 10 
B8Y C3   N15  SING N N 11 
B8Y C14  N15  SING N N 12 
B8Y C14  O58  DOUB N N 13 
B8Y N15  C20  SING N N 14 
B8Y C20  C26  SING N N 15 
B8Y C20  C30  SING N N 16 
B8Y C27  C26  SING N N 17 
B8Y C27  N28  SING N N 18 
B8Y C29  C30  SING N N 19 
B8Y C29  N28  SING N N 20 
B8Y N28  C37  SING N N 21 
B8Y C37  C39  SING N N 22 
B8Y F96  C87  SING N N 23 
B8Y C39  C41  SING N N 24 
B8Y C88  C87  DOUB Y N 25 
B8Y C88  C89  SING Y N 26 
B8Y C87  C86  SING Y N 27 
B8Y C41  N43  SING N N 28 
B8Y C86  C85  DOUB Y N 29 
B8Y C89  C83  DOUB Y N 30 
B8Y N43  C45  SING N N 31 
B8Y N43  C49  SING N N 32 
B8Y O56  C45  DOUB N N 33 
B8Y C45  C46  SING N N 34 
B8Y C49  C48  DOUB N N 35 
B8Y C85  C83  SING Y N 36 
B8Y C83  C79  SING N N 37 
B8Y C48  N47  SING N N 38 
B8Y C46  N47  DOUB N N 39 
B8Y C46  C60  SING N N 40 
B8Y C60  C62  DOUB Y N 41 
B8Y C60  C66  SING Y N 42 
B8Y C62  C63  SING Y N 43 
B8Y C79  N77  SING N N 44 
B8Y C79  O81  DOUB N N 45 
B8Y N77  C75  SING N N 46 
B8Y C66  C65  DOUB Y N 47 
B8Y C63  C64  DOUB Y N 48 
B8Y C65  C64  SING Y N 49 
B8Y C65  C75  SING N N 50 
B8Y C64  CL73 SING N N 51 
B8Y C26  H1   SING N N 52 
B8Y C26  H2   SING N N 53 
B8Y C29  H3   SING N N 54 
B8Y C29  H4   SING N N 55 
B8Y C30  H5   SING N N 56 
B8Y C30  H6   SING N N 57 
B8Y C2   H7   SING N N 58 
B8Y C20  H8   SING N N 59 
B8Y C22  H9   SING N N 60 
B8Y C22  H10  SING N N 61 
B8Y C22  H11  SING N N 62 
B8Y C27  H12  SING N N 63 
B8Y C27  H13  SING N N 64 
B8Y C37  H14  SING N N 65 
B8Y C37  H15  SING N N 66 
B8Y C39  H16  SING N N 67 
B8Y C39  H17  SING N N 68 
B8Y C41  H18  SING N N 69 
B8Y C41  H19  SING N N 70 
B8Y C48  H21  SING N N 71 
B8Y C49  H22  SING N N 72 
B8Y C5   H24  SING N N 73 
B8Y C6   H25  SING N N 74 
B8Y C62  H26  SING N N 75 
B8Y C63  H27  SING N N 76 
B8Y C66  H28  SING N N 77 
B8Y C75  H29  SING N N 78 
B8Y C75  H30  SING N N 79 
B8Y C85  H31  SING N N 80 
B8Y C86  H32  SING N N 81 
B8Y C88  H33  SING N N 82 
B8Y C89  H34  SING N N 83 
B8Y N77  H36  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B8Y SMILES           ACDLabs              12.01 "C1C(CCN(C1)CCCN2C(C(=NC=C2)c4ccc(Cl)c(CNC(=O)c3ccc(cc3)F)c4)=O)N6C(=O)N(C)c5c6cc(cc5)Cl" 
B8Y InChI            InChI                1.03  
"InChI=1S/C34H33Cl2FN6O3/c1-40-29-10-6-25(35)20-30(29)43(34(40)46)27-11-16-41(17-12-27)14-2-15-42-18-13-38-31(33(42)45)23-5-9-28(36)24(19-23)21-39-32(44)22-3-7-26(37)8-4-22/h3-10,13,18-20,27H,2,11-12,14-17,21H2,1H3,(H,39,44)" 
B8Y InChIKey         InChI                1.03  MNEPYBOQUOAGHK-UHFFFAOYSA-N 
B8Y SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(C2CCN(CCCN3C=CN=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
B8Y SMILES           CACTVS               3.385 "CN1C(=O)N(C2CCN(CCCN3C=CN=C(C3=O)c4ccc(Cl)c(CNC(=O)c5ccc(F)cc5)c4)CC2)c6cc(Cl)ccc16" 
B8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C=CN=C(C4=O)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
B8Y SMILES           "OpenEye OEToolkits" 2.0.6 "CN1c2ccc(cc2N(C1=O)C3CCN(CC3)CCCN4C=CN=C(C4=O)c5ccc(c(c5)CNC(=O)c6ccc(cc6)F)Cl)Cl" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B8Y "SYSTEMATIC NAME" ACDLabs              12.01 "N-{[2-chloro-5-(4-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-3-oxo-3,4-dihydropyrazin-2-yl)phenyl]methyl}-4-fluorobenzamide"        
B8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[[2-chloranyl-5-[4-[3-[4-(6-chloranyl-3-methyl-2-oxidanylidene-benzimidazol-1-yl)piperidin-1-yl]propyl]-3-oxidanylidene-pyrazin-2-yl]phenyl]methyl]-4-fluoranyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B8Y "Create component" 2017-08-07 RCSB 
B8Y "Initial release"  2017-12-20 RCSB 
# 
