data_B6Y
# 
_chem_comp.id                                    B6Y 
_chem_comp.name                                  "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H46 N4 O10 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        606.729 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B6Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WKM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B6Y C02 C1  C 0 1 N N N N N N -21.560 -5.493 2.041  -1.004 -1.417 0.479  C02 B6Y 1  
B6Y C04 C2  C 0 1 N N S N N N -20.941 -3.107 1.898  1.374  -0.941 0.709  C04 B6Y 2  
B6Y C05 C3  C 0 1 N N N N N N -20.959 -1.993 0.850  2.027  -2.311 0.903  C05 B6Y 3  
B6Y C06 C4  C 0 1 N N N N N N -20.470 -2.427 -0.542 1.095  -3.209 1.720  C06 B6Y 4  
B6Y C07 C5  C 0 1 N N N N N N -18.940 -2.453 -0.604 1.690  -4.615 1.808  C07 B6Y 5  
B6Y C08 C6  C 0 1 N N N N N N -21.038 -1.525 -1.638 0.937  -2.632 3.128  C08 B6Y 6  
B6Y C09 C7  C 0 1 N N N N N N -21.482 -2.563 3.229  2.341  -0.019 0.012  C09 B6Y 7  
B6Y C11 C8  C 0 1 N N S N N N -21.082 -1.377 5.418  4.422  1.247  -0.043 C11 B6Y 8  
B6Y C12 C9  C 0 1 N N N N N N -20.445 -2.139 6.589  4.747  0.808  -1.472 C12 B6Y 9  
B6Y C13 C10 C 0 1 N N S N N N -20.821 -3.622 6.641  5.482  -0.533 -1.440 C13 B6Y 10 
B6Y C14 C11 C 0 1 N N N N N N -20.130 -4.294 7.903  5.807  -0.993 -2.844 C14 B6Y 11 
B6Y C16 C12 C 0 1 N N N N N N -22.460 -4.862 7.741  7.733  -1.345 -1.594 C16 B6Y 12 
B6Y C17 C13 C 0 1 N N N N N N -22.327 -3.803 6.882  6.863  -0.378 -0.762 C17 B6Y 13 
B6Y C19 C14 C 0 1 N N R N N N -20.707 0.092  5.412  3.735  2.613  -0.072 C19 B6Y 14 
B6Y C23 C15 C 0 1 N N N N N N -22.100 -7.794 2.237  -3.316 -2.006 0.409  C23 B6Y 15 
B6Y N03 N1  N 0 1 N N N N N N -21.797 -4.188 1.478  0.165  -1.087 -0.105 N03 B6Y 16 
B6Y N10 N2  N 0 1 N N N N N N -20.584 -1.900 4.165  3.530  0.264  0.578  N10 B6Y 17 
B6Y N15 N3  N 0 1 N N N N N N -21.094 -5.007 8.550  7.075  -1.437 -2.903 N15 B6Y 18 
B6Y O01 O1  O 0 1 N N N N N N -20.715 -5.630 2.877  -1.055 -1.594 1.680  O01 B6Y 19 
B6Y O18 O2  O 0 1 N N N N N N -18.989 -4.173 8.211  5.037  -0.965 -3.780 O18 B6Y 20 
B6Y O20 O3  O 0 1 N N N N N N -21.346 0.676  4.315  4.626  3.583  -0.626 O20 B6Y 21 
B6Y O21 O4  O 0 1 N N N N N N -22.624 -2.673 3.510  2.048  0.469  -1.060 O21 B6Y 22 
B6Y O22 O5  O 0 1 N N N N N N -22.340 -6.566 1.581  -2.117 -1.546 -0.268 O22 B6Y 23 
B6Y S1  S1  S 0 1 N Y N N N N -18.933 0.233  5.160  3.286  3.100  1.617  S1  B6Y 24 
B6Y H1  H1  H 0 1 N N N N N N -19.909 -3.460 2.040  1.110  -0.523 1.681  H1  B6Y 25 
B6Y H2  H2  H 0 1 N N N N N N -20.312 -1.177 1.204  2.210  -2.767 -0.070 H2  B6Y 26 
B6Y H3  H3  H 0 1 N N N N N N -21.992 -1.627 0.754  2.972  -2.192 1.432  H3  B6Y 27 
B6Y H4  H4  H 0 1 N N N N N N -20.833 -3.449 -0.723 0.119  -3.256 1.236  H4  B6Y 28 
B6Y H5  H5  H 0 1 N N N N N N -18.551 -3.106 0.191  2.665  -4.568 2.292  H5  B6Y 29 
B6Y H6  H6  H 0 1 N N N N N N -18.619 -2.837 -1.584 1.026  -5.255 2.390  H6  B6Y 30 
B6Y H7  H7  H 0 1 N N N N N N -18.550 -1.434 -0.464 1.802  -5.026 0.805  H7  B6Y 31 
B6Y H8  H8  H 0 1 N N N N N N -22.136 -1.520 -1.577 0.513  -1.630 3.066  H8  B6Y 32 
B6Y H9  H9  H 0 1 N N N N N N -20.658 -0.501 -1.504 0.274  -3.272 3.711  H9  B6Y 33 
B6Y H10 H10 H 0 1 N N N N N N -20.728 -1.905 -2.623 1.913  -2.585 3.613  H10 B6Y 34 
B6Y H11 H11 H 0 1 N N N N N N -22.176 -1.478 5.471  5.344  1.316  0.534  H11 B6Y 35 
B6Y H12 H12 H 0 1 N N N N N N -19.351 -2.062 6.499  3.822  0.703  -2.039 H12 B6Y 36 
B6Y H13 H13 H 0 1 N N N N N N -20.770 -1.666 7.528  5.380  1.558  -1.947 H13 B6Y 37 
B6Y H14 H14 H 0 1 N N N N N N -20.509 -4.137 5.721  4.884  -1.282 -0.920 H14 B6Y 38 
B6Y H15 H15 H 0 1 N N N N N N -23.290 -4.676 8.438  8.741  -0.945 -1.706 H15 B6Y 39 
B6Y H16 H16 H 0 1 N N N N N N -22.658 -5.783 7.172  7.768  -2.326 -1.120 H16 B6Y 40 
B6Y H17 H17 H 0 1 N N N N N N -22.752 -2.893 7.332  7.227  0.646  -0.848 H17 B6Y 41 
B6Y H18 H18 H 0 1 N N N N N N -22.841 -4.017 5.933  6.822  -0.690 0.282  H18 B6Y 42 
B6Y H19 H19 H 0 1 N N N N N N -20.954 0.575  6.369  2.835  2.554  -0.684 H19 B6Y 43 
B6Y H23 H23 H 0 1 N N N N N N -22.532 -4.037 0.817  0.205  -0.946 -1.064 H23 B6Y 44 
B6Y H24 H24 H 0 1 N N N N N N -19.614 -1.806 3.939  3.796  -0.182 1.398  H24 B6Y 45 
B6Y H25 H25 H 0 1 N N N N N N -20.966 -5.533 9.391  7.499  -1.774 -3.707 H25 B6Y 46 
B6Y H26 H26 H 0 1 N N N N N N -21.133 1.601  4.279  4.908  3.386  -1.530 H26 B6Y 47 
B6Y O1  O6  O 0 1 N N N N N N ?       ?      ?      4.393  2.939  2.493  O1  B6Y 48 
B6Y O2  O7  O 0 1 N N N N N N ?       ?      ?      2.531  4.304  1.605  O2  B6Y 49 
B6Y O3  O8  O 0 1 N N N N N N ?       ?      ?      2.293  2.039  2.067  O3  B6Y 50 
B6Y C1  C16 C 0 1 N N N N N N ?       ?      ?      -3.724 -0.984 1.474  C1  B6Y 51 
B6Y C2  C17 C 0 1 N N N N N N ?       ?      ?      -3.967 0.373  0.807  C2  B6Y 52 
B6Y N1  N4  N 0 1 N N N N N N ?       ?      ?      -4.949 0.201  -0.272 N1  B6Y 53 
B6Y C4  C18 C 0 1 N N N N N N ?       ?      ?      -4.699 -0.818 -1.299 C4  B6Y 54 
B6Y C5  C19 C 0 1 N N N N N N ?       ?      ?      -4.448 -2.163 -0.609 C5  B6Y 55 
B6Y C3  C20 C 0 1 N N N N N N ?       ?      ?      -6.059 0.964  -0.317 C3  B6Y 56 
B6Y O4  O9  O 0 1 N N N N N N ?       ?      ?      -6.255 1.804  0.539  O4  B6Y 57 
B6Y O5  O10 O 0 1 N N N N N N ?       ?      ?      -6.951 0.796  -1.312 O5  B6Y 58 
B6Y C10 C21 C 0 1 N N N N N N ?       ?      ?      -3.039 -3.354 1.076  C10 B6Y 59 
B6Y H21 H21 H 0 1 N Y N N N N ?       ?      ?      1.959  2.168  2.965  H21 B6Y 60 
B6Y H22 H22 H 0 1 N N N N N N ?       ?      ?      -4.638 -1.317 1.966  H22 B6Y 61 
B6Y H27 H27 H 0 1 N N N N N N ?       ?      ?      -2.927 -0.890 2.211  H27 B6Y 62 
B6Y H28 H28 H 0 1 N N N N N N ?       ?      ?      -4.352 1.078  1.544  H28 B6Y 63 
B6Y H29 H29 H 0 1 N N N N N N ?       ?      ?      -3.031 0.749  0.393  H29 B6Y 64 
B6Y H30 H30 H 0 1 N N N N N N ?       ?      ?      -5.568 -0.900 -1.953 H30 B6Y 65 
B6Y H31 H31 H 0 1 N N N N N N ?       ?      ?      -3.823 -0.539 -1.885 H31 B6Y 66 
B6Y H32 H32 H 0 1 N N N N N N ?       ?      ?      -4.166 -2.907 -1.354 H32 B6Y 67 
B6Y H33 H33 H 0 1 N N N N N N ?       ?      ?      -5.355 -2.484 -0.098 H33 B6Y 68 
B6Y C6  C22 C 0 1 N N N N N N ?       ?      ?      -8.123 1.653  -1.298 C6  B6Y 69 
B6Y C7  C23 C 0 1 N N N N N N ?       ?      ?      -7.686 3.117  -1.381 C7  B6Y 70 
B6Y C8  C24 C 0 1 N N N N N N ?       ?      ?      -9.014 1.318  -2.496 C8  B6Y 71 
B6Y C9  C25 C 0 1 N N N N N N ?       ?      ?      -8.905 1.427  -0.002 C9  B6Y 72 
B6Y H34 H34 H 0 1 N N N N N N ?       ?      ?      -7.130 3.278  -2.304 H34 B6Y 73 
B6Y H35 H35 H 0 1 N N N N N N ?       ?      ?      -8.566 3.760  -1.371 H35 B6Y 74 
B6Y H36 H36 H 0 1 N N N N N N ?       ?      ?      -7.052 3.355  -0.528 H36 B6Y 75 
B6Y H37 H37 H 0 1 N N N N N N ?       ?      ?      -9.326 0.275  -2.437 H37 B6Y 76 
B6Y H38 H38 H 0 1 N N N N N N ?       ?      ?      -9.894 1.961  -2.485 H38 B6Y 77 
B6Y H39 H39 H 0 1 N N N N N N ?       ?      ?      -8.458 1.479  -3.419 H39 B6Y 78 
B6Y H40 H40 H 0 1 N N N N N N ?       ?      ?      -8.270 1.665  0.851  H40 B6Y 79 
B6Y H41 H41 H 0 1 N N N N N N ?       ?      ?      -9.785 2.070  0.008  H41 B6Y 80 
B6Y H42 H42 H 0 1 N N N N N N ?       ?      ?      -9.216 0.384  0.057  H42 B6Y 81 
B6Y C15 C26 C 0 1 N N N N N N ?       ?      ?      -2.581 -4.361 0.019  C15 B6Y 82 
B6Y H20 H20 H 0 1 N N N N N N ?       ?      ?      -2.258 -3.235 1.827  H20 B6Y 83 
B6Y H43 H43 H 0 1 N N N N N N ?       ?      ?      -3.950 -3.717 1.553  H43 B6Y 84 
B6Y H44 H44 H 0 1 N N N N N N ?       ?      ?      -2.463 -5.343 0.479  H44 B6Y 85 
B6Y H45 H45 H 0 1 N N N N N N ?       ?      ?      -3.326 -4.419 -0.774 H45 B6Y 86 
B6Y H46 H46 H 0 1 N N N N N N ?       ?      ?      -1.628 -4.040 -0.400 H46 B6Y 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B6Y C08 C06 SING N N 1  
B6Y C07 C06 SING N N 2  
B6Y C06 C05 SING N N 3  
B6Y C05 C04 SING N N 4  
B6Y N03 C04 SING N N 5  
B6Y N03 C02 SING N N 6  
B6Y O22 C02 SING N N 7  
B6Y O22 C23 SING N N 8  
B6Y C04 C09 SING N N 9  
B6Y C02 O01 DOUB N N 10 
B6Y C09 O21 DOUB N N 11 
B6Y C09 N10 SING N N 12 
B6Y N10 C11 SING N N 13 
B6Y O20 C19 SING N N 14 
B6Y C19 C11 SING N N 15 
B6Y C11 C12 SING N N 16 
B6Y C12 C13 SING N N 17 
B6Y C13 C17 SING N N 18 
B6Y C13 C14 SING N N 19 
B6Y C17 C16 SING N N 20 
B6Y C16 N15 SING N N 21 
B6Y C14 O18 DOUB N N 22 
B6Y C14 N15 SING N N 23 
B6Y C19 S1  SING N N 24 
B6Y C04 H1  SING N N 25 
B6Y C05 H2  SING N N 26 
B6Y C05 H3  SING N N 27 
B6Y C06 H4  SING N N 28 
B6Y C07 H5  SING N N 29 
B6Y C07 H6  SING N N 30 
B6Y C07 H7  SING N N 31 
B6Y C08 H8  SING N N 32 
B6Y C08 H9  SING N N 33 
B6Y C08 H10 SING N N 34 
B6Y C11 H11 SING N N 35 
B6Y C12 H12 SING N N 36 
B6Y C12 H13 SING N N 37 
B6Y C13 H14 SING N N 38 
B6Y C16 H15 SING N N 39 
B6Y C16 H16 SING N N 40 
B6Y C17 H17 SING N N 41 
B6Y C17 H18 SING N N 42 
B6Y C19 H19 SING N N 43 
B6Y N03 H23 SING N N 44 
B6Y N10 H24 SING N N 45 
B6Y N15 H25 SING N N 46 
B6Y O20 H26 SING N N 47 
B6Y S1  O1  DOUB N N 48 
B6Y S1  O2  DOUB N N 49 
B6Y S1  O3  SING N N 50 
B6Y C23 C1  SING N N 51 
B6Y C1  C2  SING N N 52 
B6Y C2  N1  SING N N 53 
B6Y N1  C4  SING N N 54 
B6Y C4  C5  SING N N 55 
B6Y C5  C23 SING N N 56 
B6Y N1  C3  SING N N 57 
B6Y C3  O4  DOUB N N 58 
B6Y C3  O5  SING N N 59 
B6Y C23 C10 SING N N 60 
B6Y O3  H21 SING N N 61 
B6Y C1  H22 SING N N 62 
B6Y C1  H27 SING N N 63 
B6Y C2  H28 SING N N 64 
B6Y C2  H29 SING N N 65 
B6Y C4  H30 SING N N 66 
B6Y C4  H31 SING N N 67 
B6Y C5  H32 SING N N 68 
B6Y C5  H33 SING N N 69 
B6Y O5  C6  SING N N 70 
B6Y C6  C7  SING N N 71 
B6Y C6  C8  SING N N 72 
B6Y C6  C9  SING N N 73 
B6Y C7  H34 SING N N 74 
B6Y C7  H35 SING N N 75 
B6Y C7  H36 SING N N 76 
B6Y C8  H37 SING N N 77 
B6Y C8  H38 SING N N 78 
B6Y C8  H39 SING N N 79 
B6Y C9  H40 SING N N 80 
B6Y C9  H41 SING N N 81 
B6Y C9  H42 SING N N 82 
B6Y C10 C15 SING N N 83 
B6Y C10 H20 SING N N 84 
B6Y C10 H43 SING N N 85 
B6Y C15 H44 SING N N 86 
B6Y C15 H45 SING N N 87 
B6Y C15 H46 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B6Y SMILES           ACDLabs              12.01 "C(=O)(NC(C(=O)NC(CC1CCNC1=O)C(S(=O)(=O)O)O)CC(C)C)OC2(CCN(CC2)C(=O)OC(C)(C)C)CC"                                                                                                                                                          
B6Y InChI            InChI                1.03  "InChI=1S/C26H46N4O10S/c1-7-26(9-12-30(13-10-26)24(35)40-25(4,5)6)39-23(34)29-18(14-16(2)3)21(32)28-19(22(33)41(36,37)38)15-17-8-11-27-20(17)31/h16-19,22,33H,7-15H2,1-6H3,(H,27,31)(H,28,32)(H,29,34)(H,36,37,38)/t17-,18-,19-,22+/m0/s1" 
B6Y InChIKey         InChI                1.03  XQPCHNVZRFSEQT-ZVVDCOBXSA-N                                                                                                                                                                                                                
B6Y SMILES_CANONICAL CACTVS               3.385 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                       
B6Y SMILES           CACTVS               3.385 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                              
B6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)S(=O)(=O)O"                                                                                                                                         
B6Y SMILES           "OpenEye OEToolkits" 2.0.6 "CCC1(CCN(CC1)C(=O)OC(C)(C)C)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B6Y "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-{[N-({[1-(tert-butoxycarbonyl)-4-ethylpiperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                                       
B6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},2~{S})-2-[[(2~{S})-2-[[4-ethyl-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-4-yl]oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B6Y "Create component" 2017-08-02 RCSB 
B6Y "Initial release"  2018-04-04 RCSB 
B6Y "Modify synonyms"  2021-03-01 PDBE 
B6Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      B6Y 
_pdbx_chem_comp_synonyms.name         "bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            B6Y 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
