data_A4Y
# 
_chem_comp.id                                    A4Y 
_chem_comp.name                                  "(2S,3S)-2,3-dihydroxy-3-[(7S,8R,9aS)-8-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2,7-dimethyl-5,7,8,10-tetrahydro-9aH-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-9a-yl]-2-methylbutanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H28 N4 O11 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-06 
_chem_comp.pdbx_modified_date                    2018-07-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.437 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A4Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WDG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A4Y C10  C1  C 0 1 N N N -7.764  10.807 -13.108 1.993  -1.053 -1.027 C10  A4Y 1  
A4Y C13  C2  C 0 1 N N S -8.392  7.710  -12.032 -1.565 -0.047 -2.174 C13  A4Y 2  
A4Y C17  C3  C 0 1 Y N N -7.428  4.976  -10.219 -3.181 2.212  -0.725 C17  A4Y 3  
A4Y C20  C4  C 0 1 Y N N -5.334  4.748  -8.598  -2.340 4.360  0.632  C20  A4Y 4  
A4Y C21  C5  C 0 1 N N N -4.149  4.605  -7.650  -1.874 5.574  1.393  C21  A4Y 5  
A4Y C26  C6  C 0 1 N N S -7.365  4.836  -14.161 -3.576 -0.844 0.940  C26  A4Y 6  
A4Y C28  C7  C 0 1 N N S -8.796  4.878  -14.758 -4.333 -1.934 0.180  C28  A4Y 7  
A4Y O01  O1  O 0 1 N N N -5.311  12.715 -11.835 5.130  -1.844 -1.566 O01  A4Y 8  
A4Y P02  P1  P 0 1 N N N -6.625  13.066 -12.490 4.577  -0.937 -0.356 P02  A4Y 9  
A4Y O03  O2  O 0 1 N N N -6.448  13.194 -14.109 5.638  0.230  -0.033 O03  A4Y 10 
A4Y P04  P2  P 0 1 N N N -7.544  13.969 -15.041 7.065  0.270  0.711  P04  A4Y 11 
A4Y O05  O3  O 0 1 N N N -6.880  15.037 -15.875 7.388  1.778  1.174  O05  A4Y 12 
A4Y O06  O4  O 0 1 N N N -8.136  12.915 -15.938 7.027  -0.613 1.898  O06  A4Y 13 
A4Y O07  O5  O 0 1 N N N -8.561  14.610 -14.126 8.211  -0.239 -0.299 O07  A4Y 14 
A4Y O08  O6  O 0 1 N N N -7.026  14.389 -11.887 4.388  -1.778 0.846  O08  A4Y 15 
A4Y O09  O7  O 0 1 N N N -7.752  11.892 -12.233 3.169  -0.280 -0.779 O09  A4Y 16 
A4Y C11  C8  C 0 1 N N N -6.801  9.754  -12.567 0.840  -0.120 -1.405 C11  A4Y 17 
A4Y C12  C9  C 0 1 N N R -7.295  8.352  -12.890 -0.419 -0.948 -1.670 C12  A4Y 18 
A4Y C14  C10 C 0 1 N N N -8.739  8.368  -10.695 -1.073 1.402  -2.218 C14  A4Y 19 
A4Y N15  N1  N 0 1 N N N -8.166  6.225  -11.947 -2.747 -0.117 -1.323 N15  A4Y 20 
A4Y C16  C11 C 0 1 N N N -8.567  5.126  -11.137 -3.659 1.006  -1.481 C16  A4Y 21 
A4Y C18  C12 C 0 1 Y N N -7.600  4.924  -8.824  -3.655 3.471  -1.036 C18  A4Y 22 
A4Y N19  N2  N 0 1 Y N N -6.537  4.811  -8.066  -3.214 4.512  -0.342 N19  A4Y 23 
A4Y N22  N3  N 0 1 Y N N -5.134  4.801  -9.902  -1.861 3.176  0.960  N22  A4Y 24 
A4Y C23  C13 C 0 1 Y N N -6.181  4.928  -10.741 -2.253 2.088  0.306  C23  A4Y 25 
A4Y N24  N4  N 0 1 N N N -5.991  4.998  -12.238 -1.761 0.851  0.636  N24  A4Y 26 
A4Y C25  C14 C 0 1 N N S -6.986  5.779  -12.972 -2.391 -0.365 0.098  C25  A4Y 27 
A4Y C27  C15 C 0 1 N N N -6.318  5.023  -15.256 -3.063 -1.408 2.266  C27  A4Y 28 
A4Y C29  C16 C 0 1 N N N -8.830  4.706  -16.280 -3.390 -3.103 -0.110 C29  A4Y 29 
A4Y C30  C17 C 0 1 N N N -9.604  3.667  -14.304 -5.490 -2.418 1.016  C30  A4Y 30 
A4Y O31  O8  O 0 1 N N N -9.722  2.675  -15.077 -5.437 -2.344 2.221  O31  A4Y 31 
A4Y O32  O9  O 0 1 N N N -10.167 3.647  -13.183 -6.579 -2.930 0.422  O32  A4Y 32 
A4Y O33  O10 O 0 1 N N N -9.433  6.066  -14.400 -4.825 -1.403 -1.052 O33  A4Y 33 
A4Y O34  O11 O 0 1 N N N -7.173  3.527  -13.701 -4.453 0.255  1.197  O34  A4Y 34 
A4Y S35  S1  S 0 1 N N N -6.359  7.299  -13.477 -1.078 -1.644 -0.103 S35  A4Y 35 
A4Y H101 H1  H 0 0 N N N -7.440  11.130 -14.108 2.181  -1.748 -1.845 H101 A4Y 36 
A4Y H102 H2  H 0 0 N N N -8.779  10.388 -13.169 1.730  -1.612 -0.129 H102 A4Y 37 
A4Y H1   H3  H 0 1 N N N -9.306  7.817  -12.634 -1.838 -0.357 -3.182 H1   A4Y 38 
A4Y H213 H4  H 0 0 N N N -3.216  4.562  -8.232  -2.530 5.742  2.247  H213 A4Y 39 
A4Y H211 H5  H 0 0 N N N -4.118  5.469  -6.970  -0.855 5.414  1.744  H211 A4Y 40 
A4Y H212 H6  H 0 0 N N N -4.258  3.681  -7.064  -1.900 6.445  0.738  H212 A4Y 41 
A4Y H2   H7  H 0 1 N N N -5.070  13.399 -11.221 5.278  -1.357 -2.388 H2   A4Y 42 
A4Y H3   H8  H 0 1 N N N -6.973  14.823 -16.796 8.235  1.876  1.630  H3   A4Y 43 
A4Y H4   H9  H 0 1 N N N -9.415  14.225 -14.282 8.293  0.294  -1.102 H4   A4Y 44 
A4Y H112 H10 H 0 0 N N N -5.811  9.902  -13.024 0.652  0.575  -0.586 H112 A4Y 45 
A4Y H111 H11 H 0 0 N N N -6.721  9.865  -11.476 1.104  0.438  -2.303 H111 A4Y 46 
A4Y H5   H12 H 0 1 N N N -7.888  8.578  -13.788 -0.211 -1.741 -2.388 H5   A4Y 47 
A4Y H142 H13 H 0 0 N N N -9.538  7.796  -10.200 -0.822 1.731  -1.210 H142 A4Y 48 
A4Y H143 H14 H 0 0 N N N -7.847  8.384  -10.052 -0.189 1.466  -2.853 H143 A4Y 49 
A4Y H141 H15 H 0 0 N N N -9.082  9.398  -10.872 -1.858 2.040  -2.624 H141 A4Y 50 
A4Y H161 H17 H 0 0 N N N -9.493  5.353  -10.588 -4.644 0.721  -1.110 H161 A4Y 51 
A4Y H162 H18 H 0 0 N N N -8.713  4.219  -11.742 -3.737 1.256  -2.539 H162 A4Y 52 
A4Y H181 H19 H 0 0 N N N -8.586  4.976  -8.387  -4.372 3.606  -1.832 H181 A4Y 53 
A4Y H241 H20 H 0 0 N N N -6.012  4.064  -12.594 -0.982 0.771  1.209  H241 A4Y 54 
A4Y H273 H21 H 0 0 N N N -5.312  4.990  -14.812 -3.906 -1.591 2.933  H273 A4Y 55 
A4Y H272 H22 H 0 0 N N N -6.417  4.218  -15.999 -2.536 -2.345 2.083  H272 A4Y 56 
A4Y H271 H23 H 0 0 N N N -6.470  5.996  -15.747 -2.383 -0.692 2.727  H271 A4Y 57 
A4Y H293 H24 H 0 0 N N N -8.326  3.768  -16.555 -2.668 -2.808 -0.872 H293 A4Y 58 
A4Y H291 H25 H 0 0 N N N -9.875  4.675  -16.622 -2.862 -3.379 0.803  H291 A4Y 59 
A4Y H292 H26 H 0 0 N N N -8.313  5.552  -16.756 -3.967 -3.956 -0.468 H292 A4Y 60 
A4Y H7   H27 H 0 1 N N N -10.633 2.826  -13.077 -7.296 -3.227 1.000  H7   A4Y 61 
A4Y H331 H28 H 0 0 N N N -9.409  6.167  -13.456 -5.431 -0.657 -0.944 H331 A4Y 62 
A4Y H341 H29 H 0 0 N N N -7.797  3.339  -13.010 -4.930 0.568  0.416  H341 A4Y 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A4Y C29 C28  SING N N 1  
A4Y O06 P04  DOUB N N 2  
A4Y O05 P04  SING N N 3  
A4Y C27 C26  SING N N 4  
A4Y O31 C30  DOUB N N 5  
A4Y P04 O07  SING N N 6  
A4Y P04 O03  SING N N 7  
A4Y C28 O33  SING N N 8  
A4Y C28 C30  SING N N 9  
A4Y C28 C26  SING N N 10 
A4Y C30 O32  SING N N 11 
A4Y C26 O34  SING N N 12 
A4Y C26 C25  SING N N 13 
A4Y O03 P02  SING N N 14 
A4Y S35 C25  SING N N 15 
A4Y S35 C12  SING N N 16 
A4Y C10 C11  SING N N 17 
A4Y C10 O09  SING N N 18 
A4Y C25 N24  SING N N 19 
A4Y C25 N15  SING N N 20 
A4Y C12 C11  SING N N 21 
A4Y C12 C13  SING N N 22 
A4Y P02 O09  SING N N 23 
A4Y P02 O08  DOUB N N 24 
A4Y P02 O01  SING N N 25 
A4Y N24 C23  SING N N 26 
A4Y C13 N15  SING N N 27 
A4Y C13 C14  SING N N 28 
A4Y N15 C16  SING N N 29 
A4Y C16 C17  SING N N 30 
A4Y C23 C17  DOUB Y N 31 
A4Y C23 N22  SING Y N 32 
A4Y C17 C18  SING Y N 33 
A4Y N22 C20  DOUB Y N 34 
A4Y C18 N19  DOUB Y N 35 
A4Y C20 N19  SING Y N 36 
A4Y C20 C21  SING N N 37 
A4Y C10 H101 SING N N 38 
A4Y C10 H102 SING N N 39 
A4Y C13 H1   SING N N 40 
A4Y C21 H213 SING N N 41 
A4Y C21 H211 SING N N 42 
A4Y C21 H212 SING N N 43 
A4Y O01 H2   SING N N 44 
A4Y O05 H3   SING N N 45 
A4Y O07 H4   SING N N 46 
A4Y C11 H112 SING N N 47 
A4Y C11 H111 SING N N 48 
A4Y C12 H5   SING N N 49 
A4Y C14 H142 SING N N 50 
A4Y C14 H143 SING N N 51 
A4Y C14 H141 SING N N 52 
A4Y C16 H161 SING N N 53 
A4Y C16 H162 SING N N 54 
A4Y C18 H181 SING N N 55 
A4Y N24 H241 SING N N 56 
A4Y C27 H273 SING N N 57 
A4Y C27 H272 SING N N 58 
A4Y C27 H271 SING N N 59 
A4Y C29 H293 SING N N 60 
A4Y C29 H291 SING N N 61 
A4Y C29 H292 SING N N 62 
A4Y O32 H7   SING N N 63 
A4Y O33 H331 SING N N 64 
A4Y O34 H341 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A4Y SMILES           ACDLabs              12.01 "C(CC3C(N2Cc1cnc(C)nc1NC2(C(O)(C(O)(C(O)=O)C)C)S3)C)OP(O)(=O)OP(O)(O)=O" 
A4Y InChI            InChI                1.03  
"InChI=1S/C17H28N4O11P2S/c1-9-12(5-6-31-34(29,30)32-33(26,27)28)35-17(16(4,25)15(3,24)14(22)23)20-13-11(8-21(9)17)7-18-10(2)19-13/h7,9,12,24-25H,5-6,8H2,1-4H3,(H,22,23)(H,29,30)(H,18,19,20)(H2,26,27,28)/t9-,12+,15+,16-,17-/m0/s1" 
A4Y InChIKey         InChI                1.03  AMCOUTJLRZHMEE-PLEBXABZSA-N 
A4Y SMILES_CANONICAL CACTVS               3.385 "C[C@H]1[C@@H](CCO[P](O)(=O)O[P](O)(O)=O)S[C@]2(Nc3nc(C)ncc3CN12)[C@@](C)(O)[C@](C)(O)C(O)=O" 
A4Y SMILES           CACTVS               3.385 "C[CH]1[CH](CCO[P](O)(=O)O[P](O)(O)=O)S[C]2(Nc3nc(C)ncc3CN12)[C](C)(O)[C](C)(O)C(O)=O" 
A4Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc2c(n1)N[C@]3(N(C2)[C@H]([C@H](S3)CCOP(=O)(O)OP(=O)(O)O)C)[C@](C)([C@@](C)(C(=O)O)O)O" 
A4Y SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ncc2c(n1)NC3(N(C2)C(C(S3)CCOP(=O)(O)OP(=O)(O)O)C)C(C)(C(C)(C(=O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A4Y "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,3S)-2,3-dihydroxy-3-[(7S,8R,9aS)-8-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2,7-dimethyl-5,7,8,10-tetrahydro-9aH-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-9a-yl]-2-methylbutanoic acid" 
A4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"(2~{S},3~{S})-3-[(3~{S},5~{R},6~{S})-6,12-dimethyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-4-thia-2,7,11,13-tetrazatricyclo[7.4.0.0^{3,7}]trideca-1(9),10,12-trien-3-yl]-2-methyl-2,3-bis(oxidanyl)butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A4Y "Create component" 2017-07-06 RCSB 
A4Y "Initial release"  2018-07-11 RCSB 
# 
