data_9WY
# 
_chem_comp.id                                    9WY 
_chem_comp.name                                  "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H21 N4 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-20 
_chem_comp.pdbx_modified_date                    2018-06-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        456.344 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9WY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5W4Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9WY C10   C1  C 0 1 N N N -120.927 155.601 163.652 -1.970 -1.152 0.361  C10   9WY 1  
9WY C7    C2  C 0 1 Y N N -121.109 155.652 168.598 -3.050 3.618  -0.428 C7    9WY 2  
9WY O3P   O1  O 0 1 N N N -118.595 163.041 164.744 5.075  -0.088 1.209  O3P   9WY 3  
9WY P     P1  P 0 1 N N N -117.793 161.801 164.464 3.664  0.664  1.397  P     9WY 4  
9WY O1P   O2  O 0 1 N N N -116.710 162.120 163.467 2.833  -0.081 2.369  O1P   9WY 5  
9WY O2P   O3  O 0 1 N N N -117.183 161.266 165.733 3.920  2.157  1.943  O2P   9WY 6  
9WY "O5'" O4  O 0 1 N N N -118.759 160.357 159.649 4.996  -1.591 -1.029 "O5'" 9WY 7  
9WY "C5'" C3  C 0 1 N N N -118.274 160.471 160.958 4.632  -0.521 -1.904 "C5'" 9WY 8  
9WY "C4'" C4  C 0 1 N N R -118.999 159.473 161.861 3.112  -0.504 -2.083 "C4'" 9WY 9  
9WY "O4'" O5  O 0 1 N N N -118.936 158.194 161.291 2.697  -1.697 -2.751 "O4'" 9WY 10 
9WY "C3'" C5  C 0 1 N N S -118.346 159.534 163.247 2.438  -0.426 -0.712 "C3'" 9WY 11 
9WY "O3'" O6  O 0 1 N N N -118.833 160.690 163.856 2.901  0.735  -0.019 "O3'" 9WY 12 
9WY "C2'" C6  C 0 1 N N S -118.731 158.370 164.162 0.921  -0.341 -0.894 "C2'" 9WY 13 
9WY "O2'" O7  O 0 1 N N N -117.977 157.970 164.973 0.440  -1.561 -1.462 "O2'" 9WY 14 
9WY "C1'" C7  C 0 1 N N N -120.138 157.818 164.048 0.257  -0.115 0.466  "C1'" 9WY 15 
9WY N10   N1  N 0 1 N N N -120.577 156.528 164.567 -1.196 -0.033 0.292  N10   9WY 16 
9WY C9A   C8  C 0 1 Y N N -120.764 156.254 165.881 -1.811 1.178  0.053  C9A   9WY 17 
9WY C9    C9  C 0 1 Y N N -120.434 157.212 166.872 -1.052 2.343  -0.025 C9    9WY 18 
9WY C8    C10 C 0 1 Y N N -120.608 156.903 168.216 -1.670 3.550  -0.263 C8    9WY 19 
9WY C8M   C11 C 0 1 N N N -120.254 157.956 169.269 -0.845 4.808  -0.347 C8M   9WY 20 
9WY C7M   C12 C 0 1 N N N -121.314 155.297 170.072 -3.704 4.951  -0.689 C7M   9WY 21 
9WY C6    C13 C 0 1 Y N N -121.439 154.710 167.628 -3.817 2.495  -0.357 C6    9WY 22 
9WY C5A   C14 C 0 1 Y N N -121.253 155.015 166.261 -3.212 1.246  -0.114 C5A   9WY 23 
9WY N5    N2  N 0 1 N N N -121.587 154.080 165.335 -3.968 0.142  -0.045 N5    9WY 24 
9WY N1    N3  N 0 1 N N N -120.768 155.863 162.336 -1.459 -2.352 0.581  N1    9WY 25 
9WY C4A   C15 C 0 1 N N N -121.418 154.373 164.030 -3.425 -1.027 0.181  C4A   9WY 26 
9WY C4    C16 C 0 1 N N N -121.736 153.439 163.006 -4.228 -2.267 0.264  C4    9WY 27 
9WY O4    O8  O 0 1 N N N -122.248 152.199 163.327 -5.436 -2.250 0.125  O4    9WY 28 
9WY N3    N4  N 0 1 N N N -121.552 153.765 161.738 -3.561 -3.420 0.499  N3    9WY 29 
9WY C2    C17 C 0 1 N N N -121.077 154.952 161.414 -2.228 -3.436 0.641  C2    9WY 30 
9WY O2    O9  O 0 1 N N N -120.909 155.230 160.061 -1.689 -4.509 0.851  O2    9WY 31 
9WY H1    H1  H 0 1 N N N -118.250 163.764 164.233 5.672  0.346  0.584  H1    9WY 32 
9WY H2    H2  H 0 1 N N N -116.238 161.240 165.644 4.378  2.191  2.795  H2    9WY 33 
9WY H3    H3  H 0 1 N N N -118.308 160.977 159.089 5.947  -1.662 -0.870 H3    9WY 34 
9WY H4    H4  H 0 1 N N N -117.195 160.258 160.969 4.958  0.426  -1.476 H4    9WY 35 
9WY H5    H5  H 0 1 N N N -118.450 161.493 161.326 5.110  -0.666 -2.873 H5    9WY 36 
9WY H6    H6  H 0 1 N N N -120.047 159.792 161.959 2.827  0.364  -2.678 H6    9WY 37 
9WY H7    H7  H 0 1 N N N -119.387 157.574 161.852 1.765  -1.700 -3.007 H7    9WY 38 
9WY H8    H8  H 0 1 N N N -117.252 159.567 163.136 2.685  -1.317 -0.135 H8    9WY 39 
9WY H9    H9  H 0 1 N N N -120.785 158.564 164.532 0.497  -0.944 1.130  H9    9WY 40 
9WY H10   H10 H 0 1 N N N -120.355 157.789 162.970 0.623  0.816  0.899  H10   9WY 41 
9WY H11   H11 H 0 1 N N N -120.049 158.179 166.584 0.020  2.300  0.102  H11   9WY 42 
9WY H12   H12 H 0 1 N N N -121.137 158.578 169.477 -0.533 4.969  -1.379 H12   9WY 43 
9WY H13   H13 H 0 1 N N N -119.932 157.455 170.194 -1.441 5.656  -0.011 H13   9WY 44 
9WY H14   H14 H 0 1 N N N -119.439 158.591 168.893 0.035  4.708  0.287  H14   9WY 45 
9WY H15   H15 H 0 1 N N N -120.398 154.834 170.469 -3.748 5.130  -1.763 H15   9WY 46 
9WY H16   H16 H 0 1 N N N -121.539 156.211 170.641 -4.714 4.946  -0.279 H16   9WY 47 
9WY H17   H17 H 0 1 N N N -122.152 154.591 170.166 -3.122 5.740  -0.212 H17   9WY 48 
9WY H18   H18 H 0 1 N N N -121.836 153.749 167.919 -4.887 2.562  -0.486 H18   9WY 49 
9WY H20   H20 H 0 1 N N N -121.775 153.107 161.019 -4.056 -4.252 0.560  H20   9WY 50 
9WY H21   H21 H 0 1 N N N -118.364 157.642 163.424 0.681  0.489  -1.559 H21   9WY 51 
9WY H22   H22 H 0 1 N N N -118.375 157.251 165.449 0.620  -2.343 -0.922 H22   9WY 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9WY "O5'" "C5'" SING N N 1  
9WY O2    C2    DOUB N N 2  
9WY "C5'" "C4'" SING N N 3  
9WY "O4'" "C4'" SING N N 4  
9WY C2    N3    SING N N 5  
9WY C2    N1    SING N N 6  
9WY N3    C4    SING N N 7  
9WY "C4'" "C3'" SING N N 8  
9WY N1    C10   DOUB N N 9  
9WY C4    O4    DOUB N N 10 
9WY C4    C4A   SING N N 11 
9WY "C3'" "O3'" SING N N 12 
9WY "C3'" "C2'" SING N N 13 
9WY O1P   P     DOUB N N 14 
9WY C10   C4A   SING N N 15 
9WY C10   N10   SING N N 16 
9WY "O3'" P     SING N N 17 
9WY C4A   N5    DOUB N N 18 
9WY "C1'" "C2'" SING N N 19 
9WY "C1'" N10   SING N N 20 
9WY "C2'" "O2'" SING N N 21 
9WY P     O3P   SING N N 22 
9WY P     O2P   SING N N 23 
9WY N10   C9A   SING N N 24 
9WY N5    C5A   SING N N 25 
9WY C9A   C5A   DOUB Y N 26 
9WY C9A   C9    SING Y N 27 
9WY C5A   C6    SING Y N 28 
9WY C9    C8    DOUB Y N 29 
9WY C6    C7    DOUB Y N 30 
9WY C8    C7    SING Y N 31 
9WY C8    C8M   SING N N 32 
9WY C7    C7M   SING N N 33 
9WY O3P   H1    SING N N 34 
9WY O2P   H2    SING N N 35 
9WY "O5'" H3    SING N N 36 
9WY "C5'" H4    SING N N 37 
9WY "C5'" H5    SING N N 38 
9WY "C4'" H6    SING N N 39 
9WY "O4'" H7    SING N N 40 
9WY "C3'" H8    SING N N 41 
9WY "C1'" H9    SING N N 42 
9WY "C1'" H10   SING N N 43 
9WY C9    H11   SING N N 44 
9WY C8M   H12   SING N N 45 
9WY C8M   H13   SING N N 46 
9WY C8M   H14   SING N N 47 
9WY C7M   H15   SING N N 48 
9WY C7M   H16   SING N N 49 
9WY C7M   H17   SING N N 50 
9WY C6    H18   SING N N 51 
9WY N3    H20   SING N N 52 
9WY "C2'" H21   SING N N 53 
9WY "O2'" H22   SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9WY SMILES           ACDLabs              12.01 "C1=3C(=Nc2c(N1CC(C(C(CO)O)OP(O)(O)=O)O)cc(c(C)c2)C)C(=O)NC(N=3)=O"                                                                                                                              
9WY InChI            InChI                1.03  "InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(23)14(12(24)6-22)30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11?,12-,14+/m1/s1" 
9WY InChIKey         InChI                1.03  XTUPYSORVVXTTQ-AOUZGSJDSA-N                                                                                                                                                                      
9WY SMILES_CANONICAL CACTVS               3.385 "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O[P](O)(O)=O)[C@H](O)CO)c2cc1C"                                                                                                                       
9WY SMILES           CACTVS               3.385 "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O[P](O)(O)=O)[CH](O)CO)c2cc1C"                                                                                                                          
9WY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC([C@@H]([C@@H](CO)O)OP(=O)(O)O)O"                                                                                                                         
9WY SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)OP(=O)(O)O)O"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9WY "SYSTEMATIC NAME" ACDLabs              12.01 "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-3-O-phosphono-D-ribitol"                                   
9WY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(3~{S},4~{R})-1-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]-2,4,5-tris(oxidanyl)pentan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9WY "Create component" 2017-06-20 RCSB 
9WY "Initial release"  2018-06-13 RCSB 
# 
