data_9KY
# 
_chem_comp.id                                    9KY 
_chem_comp.name                                  "(2S)-N,2-dicyclohexyl-2-{2-[4-(hydroxymethyl)phenyl]-1H-benzimidazol-1-yl}acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H35 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.596 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9KY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q0L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9KY N3  N1  N 0 1 Y N N 12.930 15.710 -2.271 -1.464 -2.994 0.998  N3  9KY 1  
9KY C4  C1  C 0 1 N N N 12.495 19.697 -4.466 0.300  0.785  0.261  C4  9KY 2  
9KY C5  C2  C 0 1 N N S 13.289 18.418 -4.746 -0.783 0.172  -0.589 C5  9KY 3  
9KY C6  C3  C 0 1 Y N N 11.478 16.811 -3.672 -2.625 -1.152 0.553  C6  9KY 4  
9KY C7  C4  C 0 1 Y N N 11.604 15.816 -2.698 -2.691 -2.433 1.130  C7  9KY 5  
9KY C13 C5  C 0 1 Y N N 16.013 16.282 -3.624 1.413  -1.657 -0.899 C13 9KY 6  
9KY C15 C6  C 0 1 Y N N 16.739 18.073 -1.646 2.772  -3.681 0.425  C15 9KY 7  
9KY C17 C7  C 0 1 Y N N 17.728 17.495 -2.421 3.416  -2.919 -0.534 C17 9KY 8  
9KY C21 C8  C 0 1 N N N 19.170 17.845 -2.183 4.862  -3.189 -0.860 C21 9KY 9  
9KY C22 C9  C 0 1 N N N 13.003 16.621 -6.593 -1.295 2.484  -1.386 C22 9KY 10 
9KY C24 C10 C 0 1 N N N 12.779 21.972 -1.680 1.383  3.552  1.417  C24 9KY 11 
9KY C26 C11 C 0 1 Y N N 9.134  16.380 -3.843 -4.926 -0.796 1.105  C26 9KY 12 
9KY C28 C12 C 0 1 N N N 13.875 18.577 -8.668 -4.032 1.658  -2.025 C28 9KY 13 
9KY C1  C13 C 0 1 Y N N 13.591 16.612 -2.976 -0.661 -2.158 0.387  C1  9KY 14 
9KY N2  N2  N 0 1 Y N N 12.789 17.314 -3.842 -1.333 -1.003 0.091  N2  9KY 15 
9KY O10 O1  O 0 1 N N N 11.903 20.303 -5.347 0.482  0.385  1.392  O10 9KY 16 
9KY N8  N3  N 0 1 N N N 12.515 20.080 -3.188 1.067  1.776  -0.235 N8  9KY 17 
9KY C14 C14 C 0 1 N N N 11.844 21.260 -2.656 2.058  2.433  0.621  C14 9KY 18 
9KY C31 C15 C 0 1 N N N 12.099 23.162 -1.022 2.418  4.239  2.310  C31 9KY 19 
9KY C32 C16 C 0 1 N N N 10.823 22.742 -0.313 3.530  4.830  1.441  C32 9KY 20 
9KY C30 C17 C 0 1 N N N 9.860  22.056 -1.296 4.205  3.711  0.646  C30 9KY 21 
9KY C25 C18 C 0 1 N N N 10.531 20.858 -1.972 3.170  3.024  -0.248 C25 9KY 22 
9KY C11 C19 C 0 1 N N N 13.619 17.962 -6.197 -1.895 1.198  -0.814 C11 9KY 23 
9KY C29 C20 C 0 1 N N N 13.595 16.115 -7.921 -2.408 3.510  -1.611 C29 9KY 24 
9KY C33 C21 C 0 1 N N N 13.381 17.124 -9.060 -3.432 2.944  -2.596 C33 9KY 25 
9KY C23 C22 C 0 1 N N N 13.320 19.017 -7.270 -2.920 0.632  -1.800 C23 9KY 26 
9KY C19 C23 C 0 1 Y N N 10.478 15.097 -2.293 -3.894 -2.873 1.691  C19 9KY 27 
9KY C27 C24 C 0 1 Y N N 9.249  15.390 -2.874 -4.991 -2.060 1.674  C27 9KY 28 
9KY C18 C25 C 0 1 Y N N 10.255 17.114 -4.262 -3.751 -0.340 0.547  C18 9KY 29 
9KY C9  C26 C 0 1 Y N N 15.029 16.863 -2.834 0.758  -2.423 0.067  C9  9KY 30 
9KY C12 C27 C 0 1 Y N N 15.412 17.767 -1.846 1.448  -3.439 0.729  C12 9KY 31 
9KY C16 C28 C 0 1 Y N N 17.350 16.595 -3.415 2.737  -1.910 -1.194 C16 9KY 32 
9KY O20 O2  O 0 1 N N N 19.991 17.554 -3.296 4.940  -4.150 -1.915 O20 9KY 33 
9KY H1  H1  H 0 1 N N N 14.282 18.649 -4.333 -0.365 -0.127 -1.550 H1  9KY 34 
9KY H2  H2  H 0 1 N N N 15.738 15.586 -4.402 0.883  -0.872 -1.418 H2  9KY 35 
9KY H3  H3  H 0 1 N N N 17.012 18.775 -0.872 3.307  -4.468 0.936  H3  9KY 36 
9KY H4  H4  H 0 1 N N N 19.533 17.271 -1.318 5.342  -2.263 -1.176 H4  9KY 37 
9KY H5  H5  H 0 1 N N N 19.240 18.921 -1.965 5.368  -3.577 0.023  H5  9KY 38 
9KY H6  H6  H 0 1 N N N 11.916 16.744 -6.707 -0.566 2.888  -0.683 H6  9KY 39 
9KY H7  H7  H 0 1 N N N 13.208 15.883 -5.803 -0.805 2.266  -2.334 H7  9KY 40 
9KY H8  H8  H 0 1 N N N 13.089 21.261 -0.900 0.956  4.281  0.728  H8  9KY 41 
9KY H9  H9  H 0 1 N N N 13.665 22.325 -2.228 0.591  3.131  2.036  H9  9KY 42 
9KY H10 H10 H 0 1 N N N 8.168  16.588 -4.280 -5.803 -0.165 1.100  H10 9KY 43 
9KY H11 H11 H 0 1 N N N 14.974 18.583 -8.634 -4.523 1.876  -1.076 H11 9KY 44 
9KY H12 H12 H 0 1 N N N 13.528 19.290 -9.430 -4.762 1.254  -2.727 H12 9KY 45 
9KY H13 H13 H 0 1 N N N 13.030 19.514 -2.545 0.963  2.054  -1.158 H13 9KY 46 
9KY H14 H14 H 0 1 N N N 11.609 21.950 -3.480 2.484  1.704  1.310  H14 9KY 47 
9KY H15 H15 H 0 1 N N N 12.787 23.608 -0.289 1.937  5.036  2.877  H15 9KY 48 
9KY H16 H16 H 0 1 N N N 11.853 23.906 -1.794 2.844  3.509  2.999  H16 9KY 49 
9KY H17 H17 H 0 1 N N N 10.335 23.632 0.110  3.103  5.559  0.753  H17 9KY 50 
9KY H18 H18 H 0 1 N N N 11.073 22.041 0.497  4.267  5.319  2.078  H18 9KY 51 
9KY H19 H19 H 0 1 N N N 9.555  22.780 -2.066 4.997  4.132  0.027  H19 9KY 52 
9KY H20 H20 H 0 1 N N N 8.972  21.709 -0.747 4.631  2.982  1.335  H20 9KY 53 
9KY H21 H21 H 0 1 N N N 9.847  20.445 -2.727 3.651  2.227  -0.814 H21 9KY 54 
9KY H22 H22 H 0 1 N N N 10.744 20.092 -1.212 2.744  3.754  -0.937 H22 9KY 55 
9KY H23 H23 H 0 1 N N N 14.708 17.812 -6.219 -2.386 1.416  0.134  H23 9KY 56 
9KY H24 H24 H 0 1 N N N 13.108 15.166 -8.190 -2.898 3.728  -0.662 H24 9KY 57 
9KY H25 H25 H 0 1 N N N 14.674 15.949 -7.790 -1.980 4.427  -2.018 H25 9KY 58 
9KY H26 H26 H 0 1 N N N 12.308 17.166 -9.300 -2.941 2.726  -3.545 H26 9KY 59 
9KY H27 H27 H 0 1 N N N 13.941 16.785 -9.944 -4.225 3.675  -2.757 H27 9KY 60 
9KY H28 H28 H 0 1 N N N 13.792 19.967 -6.980 -3.347 -0.284 -1.393 H28 9KY 61 
9KY H29 H29 H 0 1 N N N 12.231 19.155 -7.344 -2.429 0.414  -2.749 H29 9KY 62 
9KY H30 H30 H 0 1 N N N 10.560 14.326 -1.541 -3.955 -3.855 2.137  H30 9KY 63 
9KY H31 H31 H 0 1 N N N 8.371  14.840 -2.568 -5.918 -2.404 2.109  H31 9KY 64 
9KY H32 H32 H 0 1 N N N 10.171 17.885 -5.014 -3.707 0.645  0.105  H32 9KY 65 
9KY H33 H33 H 0 1 N N N 14.658 18.234 -1.229 0.947  -4.035 1.477  H33 9KY 66 
9KY H34 H34 H 0 1 N N N 18.107 16.134 -4.032 3.245  -1.318 -1.941 H34 9KY 67 
9KY H35 H35 H 0 1 N N N 20.889 17.792 -3.098 5.844  -4.372 -2.178 H35 9KY 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9KY C33 C28 SING N N 1  
9KY C33 C29 SING N N 2  
9KY C28 C23 SING N N 3  
9KY C29 C22 SING N N 4  
9KY C23 C11 SING N N 5  
9KY C22 C11 SING N N 6  
9KY C11 C5  SING N N 7  
9KY O10 C4  DOUB N N 8  
9KY C5  C4  SING N N 9  
9KY C5  N2  SING N N 10 
9KY C4  N8  SING N N 11 
9KY C18 C26 DOUB Y N 12 
9KY C18 C6  SING Y N 13 
9KY C26 C27 SING Y N 14 
9KY N2  C6  SING Y N 15 
9KY N2  C1  SING Y N 16 
9KY C6  C7  DOUB Y N 17 
9KY C13 C16 DOUB Y N 18 
9KY C13 C9  SING Y N 19 
9KY C16 C17 SING Y N 20 
9KY O20 C21 SING N N 21 
9KY N8  C14 SING N N 22 
9KY C1  C9  SING N N 23 
9KY C1  N3  DOUB Y N 24 
9KY C27 C19 DOUB Y N 25 
9KY C9  C12 DOUB Y N 26 
9KY C7  C19 SING Y N 27 
9KY C7  N3  SING Y N 28 
9KY C14 C25 SING N N 29 
9KY C14 C24 SING N N 30 
9KY C17 C21 SING N N 31 
9KY C17 C15 DOUB Y N 32 
9KY C25 C30 SING N N 33 
9KY C12 C15 SING Y N 34 
9KY C24 C31 SING N N 35 
9KY C30 C32 SING N N 36 
9KY C31 C32 SING N N 37 
9KY C5  H1  SING N N 38 
9KY C13 H2  SING N N 39 
9KY C15 H3  SING N N 40 
9KY C21 H4  SING N N 41 
9KY C21 H5  SING N N 42 
9KY C22 H6  SING N N 43 
9KY C22 H7  SING N N 44 
9KY C24 H8  SING N N 45 
9KY C24 H9  SING N N 46 
9KY C26 H10 SING N N 47 
9KY C28 H11 SING N N 48 
9KY C28 H12 SING N N 49 
9KY N8  H13 SING N N 50 
9KY C14 H14 SING N N 51 
9KY C31 H15 SING N N 52 
9KY C31 H16 SING N N 53 
9KY C32 H17 SING N N 54 
9KY C32 H18 SING N N 55 
9KY C30 H19 SING N N 56 
9KY C30 H20 SING N N 57 
9KY C25 H21 SING N N 58 
9KY C25 H22 SING N N 59 
9KY C11 H23 SING N N 60 
9KY C29 H24 SING N N 61 
9KY C29 H25 SING N N 62 
9KY C33 H26 SING N N 63 
9KY C33 H27 SING N N 64 
9KY C23 H28 SING N N 65 
9KY C23 H29 SING N N 66 
9KY C19 H30 SING N N 67 
9KY C27 H31 SING N N 68 
9KY C18 H32 SING N N 69 
9KY C12 H33 SING N N 70 
9KY C16 H34 SING N N 71 
9KY O20 H35 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9KY SMILES           ACDLabs              12.01 "n3c5c(n(C(C(NC1CCCCC1)=O)C2CCCCC2)c3c4ccc(cc4)CO)cccc5"                                                                                                                                   
9KY InChI            InChI                1.03  "InChI=1S/C28H35N3O2/c32-19-20-15-17-22(18-16-20)27-30-24-13-7-8-14-25(24)31(27)26(21-9-3-1-4-10-21)28(33)29-23-11-5-2-6-12-23/h7-8,13-18,21,23,26,32H,1-6,9-12,19H2,(H,29,33)/t26-/m0/s1" 
9KY InChIKey         InChI                1.03  VNQAIQZVCULCDE-SANMLTNESA-N                                                                                                                                                                
9KY SMILES_CANONICAL CACTVS               3.385 "OCc1ccc(cc1)c2nc3ccccc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5"                                                                                                                                  
9KY SMILES           CACTVS               3.385 "OCc1ccc(cc1)c2nc3ccccc3n2[CH](C4CCCCC4)C(=O)NC5CCCCC5"                                                                                                                                    
9KY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)nc(n2[C@@H](C3CCCCC3)C(=O)NC4CCCCC4)c5ccc(cc5)CO"                                                                                                                              
9KY SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)nc(n2C(C3CCCCC3)C(=O)NC4CCCCC4)c5ccc(cc5)CO"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9KY "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-N,2-dicyclohexyl-2-{2-[4-(hydroxymethyl)phenyl]-1H-benzimidazol-1-yl}acetamide"    
9KY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N},2-dicyclohexyl-2-[2-[4-(hydroxymethyl)phenyl]benzimidazol-1-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9KY "Create component" 2017-05-19 RCSB 
9KY "Initial release"  2017-07-05 RCSB 
# 
