data_8CY
# 
_chem_comp.id                                    8CY 
_chem_comp.name                                  "ruthenocenyl-7-aminodesacetoxycephalosporanic acid, bound form" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H15 N2 O6 Ru S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-01-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.499 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8CY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5UJO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8CY C1  C1  C  0 1 N N N N N N 4.906  -1.828 -13.462 4.906  -1.828 -13.462 C1  8CY 1  
8CY C11 C2  C  0 1 N N N N N N 11.495 7.078  -10.317 11.495 7.078  -10.317 C11 8CY 2  
8CY C12 C3  C  0 1 N N N N N N 11.499 6.720  -11.646 11.499 6.720  -11.646 C12 8CY 3  
8CY C13 C4  C  0 1 N N N N N N 12.812 6.731  -12.065 12.812 6.731  -12.065 C13 8CY 4  
8CY C14 C5  C  0 1 N N N N N N 13.622 7.058  -10.974 13.622 7.058  -10.974 C14 8CY 5  
8CY C15 C6  C  0 1 N N N N N N 12.774 7.265  -9.908  12.774 7.265  -9.908  C15 8CY 6  
8CY C16 C7  C  0 1 N N N N N N 13.538 3.217  -10.448 13.538 3.217  -10.448 C16 8CY 7  
8CY C17 C8  C  0 1 N N N N N N 12.245 3.094  -10.917 12.245 3.094  -10.917 C17 8CY 8  
8CY C18 C9  C  0 1 N N N N N N 11.346 3.521  -9.932  11.346 3.521  -9.932  C18 8CY 9  
8CY C20 C10 C  0 1 N N N N N N 13.504 3.742  -9.196  13.504 3.742  -9.196  C20 8CY 10 
8CY C31 C11 C  0 1 N N R N N N 5.104  2.234  -13.923 5.104  2.234  -13.923 C31 8CY 11 
8CY C34 C12 C  0 1 N N R N N N 4.704  0.820  -14.018 4.704  0.820  -14.018 C34 8CY 12 
8CY O67 O1  O  0 1 N N N N N N 3.535  3.634  -13.546 3.535  3.634  -13.546 O67 8CY 13 
8CY C32 C13 C  0 1 N N N N N N 4.097  3.138  -14.467 4.097  3.138  -14.467 C32 8CY 14 
8CY S49 S1  S  0 1 N N N N N N 5.933  -0.405 -13.516 5.933  -0.405 -13.516 S49 8CY 15 
8CY C50 C14 C  0 1 N N N N N N 3.506  -1.528 -12.925 3.506  -1.528 -12.925 C50 8CY 16 
8CY C52 C15 C  0 1 N N N N N N 2.679  -2.774 -12.703 2.679  -2.774 -12.703 C52 8CY 17 
8CY C51 C16 C  0 1 N N N N N N 2.997  -0.295 -12.739 2.997  -0.295 -12.739 C51 8CY 18 
8CY C63 C17 C  0 1 N N N N N N 1.636  -0.076 -12.268 1.636  -0.076 -12.268 C63 8CY 19 
8CY O65 O2  O  0 1 N N N N N N 1.325  -0.355 -11.166 1.325  -0.355 -11.166 O65 8CY 20 
8CY O64 O3  O  0 1 N N N N N N 0.853  0.356  -13.077 0.853  0.356  -13.077 O64 8CY 21 
8CY N33 N1  N  0 1 N N N N N N 3.637  0.776  -13.072 3.637  0.776  -13.072 N33 8CY 22 
8CY N30 N2  N  0 1 N N N N N N 6.088  2.677  -12.969 6.088  2.677  -12.969 N30 8CY 23 
8CY C27 C18 C  0 1 N N N N N N 7.388  2.609  -12.859 7.388  2.609  -12.859 C27 8CY 24 
8CY O29 O4  O  0 1 N N N N N N 8.088  2.170  -13.635 8.088  2.170  -13.635 O29 8CY 25 
8CY C26 C19 C  0 1 N N N N N N 7.835  3.191  -11.538 7.835  3.191  -11.538 C26 8CY 26 
8CY C25 C20 C  0 1 N N N N N N 9.364  3.348  -11.491 9.364  3.348  -11.491 C25 8CY 27 
8CY C24 C21 C  0 1 N N N N N N 9.837  3.615  -10.103 9.837  3.615  -10.103 C24 8CY 28 
8CY O28 O5  O  0 1 N N N N N N 9.159  3.923  -9.244  9.159  3.923  -9.244  O28 8CY 29 
8CY RU  RU1 RU 0 0 N N N N N N 12.558 5.192  -10.530 12.558 5.192  -10.530 RU  8CY 30 
8CY C19 C22 C  0 1 N N N N N N 12.154 3.922  -8.842  12.154 3.922  -8.842  C19 8CY 31 
8CY H1  H1  H  0 1 N N N N N N 4.813  -2.233 -14.480 4.812  -2.233 -14.481 H1  8CY 32 
8CY H2  H2  H  0 1 N N N N N N 5.379  -2.578 -12.811 5.379  -2.578 -12.811 H2  8CY 33 
8CY H11 H11 H  0 1 N N N N N N 5.766  2.237  -14.802 5.766  2.237  -14.802 H11 8CY 34 
8CY H12 H12 H  0 1 N N N N N N 4.373  0.559  -15.034 4.373  0.559  -15.034 H12 8CY 35 
8CY H16 H16 H  0 1 N N N N N N 1.688  -2.493 -12.318 1.688  -2.493 -12.318 H16 8CY 36 
8CY H17 H17 H  0 1 N N N N N N 2.563  -3.312 -13.656 2.563  -3.312 -13.656 H17 8CY 37 
8CY H18 H18 H  0 1 N N N N N N 3.184  -3.424 -11.974 3.184  -3.424 -11.974 H18 8CY 38 
8CY H19 H19 H  0 1 N N N N N N -0.008 0.424  -12.681 -0.008 0.424  -12.681 H19 8CY 39 
8CY H20 H20 H  0 1 N N N N N N 4.018  1.137  -12.221 4.018  1.137  -12.221 H20 8CY 40 
8CY H21 H21 H  0 1 N N N N N N 5.671  3.157  -12.197 5.672  3.157  -12.197 H21 8CY 41 
8CY H22 H22 H  0 1 N N N N N N 7.368  4.178  -11.404 7.368  4.178  -11.404 H22 8CY 42 
8CY H23 H23 H  0 1 N N N N N N 7.517  2.522  -10.725 7.517  2.522  -10.725 H23 8CY 43 
8CY H24 H24 H  0 1 N N N N N N 9.831  2.422  -11.857 9.831  2.422  -11.857 H24 8CY 44 
8CY H25 H25 H  0 1 N N N N N N 9.658  4.188  -12.138 9.658  4.188  -12.138 H25 8CY 45 
8CY O1  O6  O  0 1 N Y N N N N 3.590  3.082  -15.764 3.590  3.082  -15.764 O1  8CY 46 
8CY H3  H3  H  0 1 N Y N N N N 2.736  3.498  -15.789 2.737  3.498  -15.789 H3  8CY 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8CY C1  S49 SING N N 1  
8CY C1  C50 SING N N 2  
8CY C11 C12 SING N N 3  
8CY C11 C15 SING N N 4  
8CY C11 RU  SING N N 5  
8CY C12 C13 SING N N 6  
8CY C12 RU  SING N N 7  
8CY C13 C14 SING N N 8  
8CY C13 RU  SING N N 9  
8CY C14 C15 SING N N 10 
8CY C14 RU  SING N N 11 
8CY C15 RU  SING N N 12 
8CY C16 C17 SING N N 13 
8CY C16 C20 SING N N 14 
8CY C16 RU  SING N N 15 
8CY C17 C18 SING N N 16 
8CY C17 RU  SING N N 17 
8CY C18 C24 SING N N 18 
8CY C18 RU  SING N N 19 
8CY C18 C19 SING N N 20 
8CY C20 RU  SING N N 21 
8CY C20 C19 SING N N 22 
8CY C31 C34 SING N N 23 
8CY C31 C32 SING N N 24 
8CY C31 N30 SING N N 25 
8CY C34 S49 SING N N 26 
8CY C34 N33 SING N N 27 
8CY O67 C32 DOUB N N 28 
8CY C50 C52 SING N N 29 
8CY C50 C51 DOUB N N 30 
8CY C51 C63 SING N N 31 
8CY C51 N33 SING N N 32 
8CY C63 O65 DOUB N N 33 
8CY C63 O64 SING N N 34 
8CY N30 C27 SING N N 35 
8CY C27 O29 DOUB N N 36 
8CY C27 C26 SING N N 37 
8CY C26 C25 SING N N 38 
8CY C25 C24 SING N N 39 
8CY C24 O28 DOUB N N 40 
8CY RU  C19 SING N N 41 
8CY C1  H1  SING N N 42 
8CY C1  H2  SING N N 43 
8CY C31 H11 SING N N 44 
8CY C34 H12 SING N N 45 
8CY C52 H16 SING N N 46 
8CY C52 H17 SING N N 47 
8CY C52 H18 SING N N 48 
8CY O64 H19 SING N N 49 
8CY N33 H20 SING N N 50 
8CY N30 H21 SING N N 51 
8CY C26 H22 SING N N 52 
8CY C26 H23 SING N N 53 
8CY C25 H24 SING N N 54 
8CY C25 H25 SING N N 55 
8CY C32 O1  SING N N 56 
8CY O1  H3  SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8CY SMILES           ACDLabs              12.01 "C%12SC(C(C(=O)O)NC(=O)CCC(C9%10C8C7C%11[Ru]6432789(C1C5C4C3C12)C%10%11)=O)NC(=C%12C)C(=O)O"                                                                                                         
8CY InChI            InChI                1.03  "InChI=1S/C17H19N2O6S.C5H5.Ru/c1-9-8-26-15(19-13(9)16(22)23)14(17(24)25)18-12(21)7-6-11(20)10-4-2-3-5-10;1-2-4-5-3-1;/h2-5,14-15,19H,6-8H2,1H3,(H,18,21)(H,22,23)(H,24,25);1-5H;/t14-,15+;;/m0../s1" 
8CY InChIKey         InChI                1.03  RODYUOCEXNRXSR-FZMMWMHASA-N                                                                                                                                                                          
8CY SMILES_CANONICAL CACTVS               3.385 "CC1=C(N[C@H](SC1)[C@H](NC(=O)CCC(=O)C2([Ru])CCCC2)C(O)=O)C(O)=O.C3CCCC3"                                                                                                                            
8CY SMILES           CACTVS               3.385 "CC1=C(N[CH](SC1)[CH](NC(=O)CCC(=O)C2([Ru])CCCC2)C(O)=O)C(O)=O.C3CCCC3"                                                                                                                              
8CY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=C(N[C@H](SC1)[C@@H](C(=O)O)NC(=O)CCC(=O)C23[C]4[Ru]2567891([C]4[C]5[C]63)[C]2[C]7[C]8[C]9[C]12)C(=O)O"                                                                                          
8CY SMILES           "OpenEye OEToolkits" 2.0.6 "CC1=C(NC(SC1)C(C(=O)O)NC(=O)CCC(=O)C23[C]4[Ru]2567891([C]4[C]5[C]63)[C]2[C]7[C]8[C]9[C]12)C(=O)O"                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           8CY 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "[(1,2,3,4,5-eta)-1-(4-{[carboxy(4-carboxy-5-methyl-3,6-dihydro-2H-1,3-thiazin-2-yl)methyl]amino}-4-oxobutanoyl)cyclopentadienyl][(1,2,3,4,5-eta)-cyclopentadienyl]ruthenium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8CY "Create component" 2017-01-19 RCSB 
8CY "Initial release"  2017-02-08 RCSB 
8CY "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8CY 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C32 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
